GREMLIN Database
YJJA - Uncharacterized protein YjjA
UniProt: P18390 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG11214
Length: 164 (153)
Sequences: 139 (109)
Seq/√Len: 8.8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
86_K160_L2.7830.86
28_W37_S2.6140.82
76_A147_V2.6120.82
86_K91_T2.4950.79
71_N96_I2.3790.76
75_A155_V2.2130.70
19_I58_N2.0950.65
85_Q160_L2.0950.65
12_A48_E2.0530.64
53_L58_N1.9970.62
68_S134_N1.8970.57
71_N134_N1.8810.57
48_E51_W1.8670.56
138_I142_P1.8610.56
76_A112_K1.8270.54
54_A78_I1.8240.54
117_Y135_L1.7830.53
15_A21_T1.7600.52
22_G50_G1.7440.51
86_K98_N1.7420.51
78_I127_T1.7410.51
142_P145_E1.7170.50
69_A76_A1.7090.49
58_N68_S1.5890.44
38_E41_N1.5810.44
23_V36_A1.5790.44
99_Q151_A1.5550.43
14_A134_N1.5410.42
69_A99_Q1.5380.42
90_V100_V1.5240.42
30_D72_M1.5230.41
81_Y124_L1.4780.40
79_L135_L1.4400.38
97_K153_D1.4370.38
96_I161_N1.4210.37
69_A73_N1.3940.36
97_K101_L1.3940.36
106_L142_P1.3830.36
125_L135_L1.3670.35
30_D151_A1.3620.35
100_V133_L1.3590.35
41_N78_I1.3560.35
85_Q94_E1.3470.34
52_S55_S1.3420.34
124_L148_K1.3320.34
153_D156_L1.3160.33
86_K96_I1.3150.33
71_N117_Y1.3140.33
10_C15_A1.3010.33
54_A81_Y1.2880.32
7_H130_G1.2850.32
99_Q110_E1.2760.32
154_L162_F1.2730.32
112_K122_Q1.2660.31
13_I40_G1.2650.31
140_T145_E1.2540.31
30_D33_S1.2390.30
129_D145_E1.2330.30
28_W118_L1.2090.29
111_Q143_L1.2050.29
53_L61_S1.2020.29
13_I119_D1.2000.29
24_H27_S1.1770.28
97_K134_N1.1700.28
51_W141_T1.1380.27
9_L160_L1.1380.27
110_E113_E1.1300.26
50_G78_I1.1230.26
43_N51_W1.1180.26
75_A151_A1.1080.26
93_A114_D1.1060.26
81_Y148_K1.0990.25
91_T95_N1.0970.25
47_Q58_N1.0870.25
76_A96_I1.0810.25
130_G133_L1.0730.25
22_G37_S1.0580.24
44_S143_L1.0580.24
25_A146_K1.0560.24
99_Q105_G1.0540.24
84_K153_D1.0520.24
38_E130_G1.0470.24
116_N142_P1.0460.24
24_H110_E1.0290.23
41_N109_E1.0230.23
10_C17_A1.0150.23
86_K95_N1.0150.23
54_A59_L1.0100.23
47_Q53_L1.0090.23
60_L133_L1.0030.22
10_C146_K1.0020.22
16_S19_I0.9970.22
75_A148_K0.9950.22
83_A114_D0.9830.22
100_V128_K0.9820.22
87_L144_A0.9790.22
74_N135_L0.9740.22
53_L84_K0.9590.21
11_C22_G0.9580.21
148_K155_V0.9580.21
22_G42_Q0.9580.21
21_T155_V0.9550.21
59_L90_V0.9270.20
44_S162_F0.9170.20
20_S131_Q0.9140.20
85_Q163_I0.9060.20
17_A112_K0.9030.20
63_G141_T0.9030.20
68_S159_G0.9020.20
80_Q158_Q0.9000.20
44_S140_T0.8840.19
140_T144_A0.8810.19
78_I133_L0.8800.19
47_Q129_D0.8790.19
34_S159_G0.8720.19
79_L125_L0.8710.19
12_A15_A0.8690.19
88_A144_A0.8650.19
20_S134_N0.8620.19
7_H19_I0.8620.19
87_L91_T0.8530.18
65_Q145_E0.8500.18
104_L131_Q0.8500.18
88_A116_N0.8390.18
133_L145_E0.8390.18
75_A154_L0.8260.18
61_S102_E0.8210.17
29_K88_A0.8160.17
49_G52_S0.8070.17
85_Q88_A0.8060.17
31_A78_I0.7940.17
62_S104_L0.7890.17
42_Q100_V0.7820.17
150_K154_L0.7820.17
106_L140_T0.7720.16
61_S71_N0.7710.16
17_A110_E0.7690.16
20_S38_E0.7690.16
124_L140_T0.7690.16
88_A161_N0.7540.16
80_Q98_N0.7480.16
14_A100_V0.7410.16
73_N115_T0.7390.16
12_A37_S0.7380.15
16_S100_V0.7350.15
59_L104_L0.7320.15
59_L62_S0.7310.15
93_A137_N0.7300.15
148_K156_L0.7270.15
100_V131_Q0.7250.15
138_I144_A0.7220.15
28_W39_L0.7210.15
145_E159_G0.7210.15
8_L101_L0.7160.15
33_S39_L0.7150.15
10_C44_S0.7080.15
71_N75_A0.7060.15
89_S93_A0.7060.15
97_K121_I0.7050.15
65_Q126_K0.7050.15
65_Q133_L0.7010.15
136_D163_I0.6980.15
78_I163_I0.6980.15
101_L116_N0.6970.15
112_K124_L0.6870.14
145_E158_Q0.6810.14
68_S78_I0.6790.14
22_G80_Q0.6790.14
7_H17_A0.6760.14
84_K101_L0.6730.14
105_G147_V0.6710.14
50_G75_A0.6700.14
16_S24_H0.6680.14
73_N106_L0.6670.14
83_A86_K0.6660.14
7_H110_E0.6660.14
97_K104_L0.6640.14
87_L114_D0.6610.14
14_A22_G0.6610.14
114_D161_N0.6570.14
12_A24_H0.6530.14
15_A20_S0.6500.14
106_L143_L0.6490.14
47_Q51_W0.6450.14
25_A157_K0.6450.14
59_L63_G0.6340.13
26_A29_K0.6310.13
63_G119_D0.6220.13
133_L144_A0.6190.13
64_N127_T0.6160.13
75_A112_K0.6050.13
91_T137_N0.6020.13
90_V141_T0.6000.13
48_E141_T0.5990.13
69_A86_K0.5930.13
25_A106_L0.5860.12
86_K128_K0.5790.12
31_A155_V0.5790.12
7_H131_Q0.5780.12
7_H69_A0.5770.12
110_E141_T0.5750.12
7_H16_S0.5750.12
48_E134_N0.5700.12
79_L100_V0.5690.12
18_L132_Q0.5670.12
47_Q122_Q0.5670.12
118_L121_I0.5640.12
58_N109_E0.5520.12
134_N153_D0.5520.12
54_A150_K0.5430.12
89_S146_K0.5360.11
148_K154_L0.5350.11
83_A88_A0.5310.11
76_A130_G0.5300.11
95_N98_N0.5280.11
25_A81_Y0.5180.11
52_S73_N0.5180.11
63_G124_L0.5170.11
88_A140_T0.5150.11
58_N94_E0.5140.11
29_K132_Q0.5100.11
116_N157_K0.5060.11
36_A52_S0.5050.11
29_K32_L0.5020.11
43_N47_Q0.5000.11
18_L147_V0.5000.11
120_G123_G0.5000.11
120_G152_C0.5000.11
123_G152_C0.5000.11
82_C123_G0.5000.11
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2vdaB 1 0.1524 42 0.937 Contact Map
4yahX 1 0.5122 3.5 0.962 Contact Map
3rpwA 1 0.5122 3.2 0.963 Contact Map
1u9lA 1 0.4085 2.6 0.965 Contact Map
3qaxA 1 0.5061 2.2 0.966 Contact Map
4hn3A 3 0.3415 1.8 0.968 Contact Map
1m56D 1 0.1463 1.5 0.969 Contact Map
2pq4B 1 0.2134 1.5 0.969 Contact Map
4ombA 1 0.4695 1.3 0.97 Contact Map
1qleD 1 0.1463 1.2 0.971 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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