GREMLIN Database
RHSC - Protein RhsC
UniProt: P16918 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG10848
Length: 1397 (1175)
Sequences: 120 (85)
Seq/√Len: 2.5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
54_G93_G4.2220.69
1238_P1243_D4.1900.68
154_R160_Q4.1890.68
1221_D1238_P3.8730.61
1221_D1243_D3.8730.61
78_Y95_G3.8450.61
1238_P1246_G3.6710.57
1243_D1246_G3.6710.57
78_Y93_G3.6580.57
54_G78_Y3.6470.56
362_D365_G3.6100.55
618_D622_K3.5850.55
994_Y998_G3.5430.54
54_G181_G3.5000.53
1208_R1238_P3.4720.52
1208_R1243_D3.4720.52
178_S182_P3.3650.50
1221_D1246_G3.3420.49
638_D642_R3.3310.49
904_D908_N3.3300.49
1208_R1221_D3.1970.46
1221_D1234_Y3.1610.45
54_G95_G3.1290.44
78_Y96_W3.1200.44
1174_G1246_G3.0970.44
576_D580_Q3.0290.42
96_W104_L3.0020.42
651_G1001_V2.9980.42
147_A160_Q2.9910.41
1208_R1246_G2.9590.41
908_N1230_N2.9180.40
879_Y885_L2.8490.38
776_N780_L2.7640.36
860_N939_Y2.7580.36
93_G96_W2.7510.36
80_S93_G2.7300.36
54_G96_W2.6990.35
446_P860_N2.6900.35
1201_G1246_G2.6810.35
1210_Y1221_D2.6730.35
54_G80_S2.6640.34
93_G181_G2.6210.33
994_Y1000_R2.5590.32
66_L171_H2.5570.32
1210_Y1234_Y2.5510.32
901_Y1216_R2.5050.31
1204_Y1209_Y2.5030.31
66_L72_F2.4930.31
537_G908_N2.4420.30
720_Y775_Y2.4300.30
744_Y1170_Y2.4180.29
257_E261_Q2.4120.29
860_N864_E2.4020.29
775_Y829_G2.3870.29
1174_G1208_R2.3740.29
880_S1172_E2.3650.28
1201_G1208_R2.3430.28
1150_H1211_D2.3000.27
683_G748_G2.2960.27
706_T756_T2.2950.27
485_I857_Y2.2950.27
1234_Y1238_P2.2950.27
1234_Y1243_D2.2950.27
490_D943_G2.2910.27
1174_G1238_P2.2690.27
1174_G1243_D2.2690.27
68_G181_G2.2670.27
1212_P1246_G2.2470.26
1174_G1201_G2.2390.26
908_N1235_P2.2080.26
96_W659_D2.1850.25
181_G679_H2.1760.25
275_D278_P2.1730.25
1232_Y1238_P2.1680.25
1232_Y1243_D2.1680.25
1202_L1209_Y2.1330.24
54_G68_G2.1280.24
147_A154_R2.1190.24
1210_Y1238_P2.1180.24
1210_Y1243_D2.1180.24
347_V729_I2.1160.24
1238_P1244_P2.1120.24
995_D998_G2.1040.24
969_Y1219_T2.0860.24
490_D1208_R2.0850.24
943_G1208_R2.0850.24
490_D1238_P2.0840.24
490_D1243_D2.0840.24
943_G1238_P2.0840.24
943_G1243_D2.0840.24
426_D430_R2.0750.23
447_D680_D2.0740.23
72_F171_H2.0600.23
493_G637_Y2.0590.23
1201_G1238_P2.0590.23
1201_G1243_D2.0590.23
1215_G1238_P2.0320.23
1215_G1243_D2.0320.23
118_G121_L2.0220.23
748_G975_L2.0220.23
700_D704_R2.0210.23
1174_G1221_D2.0180.22
662_D864_E2.0140.22
638_D904_D2.0020.22
426_D663_R1.9990.22
78_Y181_G1.9810.22
744_Y775_Y1.9800.22
253_A256_A1.9730.22
901_Y1215_G1.9660.22
182_P212_L1.9470.21
80_S96_W1.9420.21
490_D1221_D1.9340.21
940_D1151_R1.9340.21
943_G1221_D1.9340.21
969_Y1206_R1.9310.21
493_G1174_G1.9260.21
995_D1000_R1.9230.21
72_F182_P1.9220.21
683_G975_L1.9200.21
501_P1232_Y1.9200.21
150_D154_R1.9190.21
1014_G1162_G1.9110.21
171_H182_P1.8990.21
147_A188_W1.8940.21
880_S888_V1.8780.20
428_V1001_V1.8710.20
1212_P1238_P1.8650.20
1212_P1243_D1.8650.20
992_Y996_P1.8650.20
721_D1216_R1.8620.20
493_G1246_G1.8610.20
481_D1153_L1.8550.20
482_G829_G1.8540.20
334_R338_Y1.8450.20
63_D66_L1.8410.20
523_D527_S1.8340.20
744_Y857_Y1.8290.20
458_T1217_Y1.8250.20
748_G1209_Y1.8240.20
550_T1217_Y1.8220.20
680_D949_T1.8010.19
576_D658_Y1.7990.19
1221_D1232_Y1.7930.19
425_F940_D1.7870.19
700_D1197_D1.7870.19
1197_D1208_R1.7860.19
286_D291_L1.7780.19
369_E582_I1.7760.19
879_Y992_Y1.7730.19
160_Q171_H1.7710.19
885_L1014_G1.7690.19
1058_R1190_R1.7650.19
147_A171_H1.7620.19
745_D749_R1.7600.19
1194_Q1206_R1.7560.19
558_G1234_Y1.7540.19
720_Y1197_D1.7520.19
485_I555_D1.7480.18
901_Y1170_Y1.7480.18
439_G642_R1.7470.18
1237_N1243_D1.7410.18
880_S1221_D1.7320.18
800_G1193_G1.7320.18
1234_Y1246_G1.7290.18
838_T1211_D1.7240.18
550_T721_D1.7220.18
480_P647_T1.7210.18
1201_G1221_D1.7150.18
880_S1200_S1.7130.18
510_Y775_Y1.7130.18
316_W975_L1.7000.18
54_G66_L1.7000.18
748_G970_D1.6980.18
1201_G1210_Y1.6960.18
745_D1003_K1.6910.18
575_Y720_Y1.6900.18
490_D880_S1.6880.18
880_S943_G1.6880.18
519_C522_E1.6810.18
1000_R1204_Y1.6780.18
503_G1148_C1.6710.17
947_E974_R1.6710.17
1202_L1208_R1.6710.17
1208_R1234_Y1.6690.17
659_D663_R1.6690.17
1221_D1244_P1.6670.17
1197_D1238_P1.6590.17
1197_D1243_D1.6590.17
699_Y720_Y1.6540.17
67_P90_G1.6490.17
721_D1217_Y1.6400.17
490_D1174_G1.6350.17
943_G1174_G1.6350.17
621_G699_Y1.6320.17
1174_G1193_G1.6310.17
731_H738_V1.6250.17
555_D647_T1.6250.17
1173_W1190_R1.6210.17
477_A746_S1.6170.17
1215_G1221_D1.6100.17
914_E1200_S1.6040.17
93_G104_L1.5940.16
720_Y802_L1.5930.16
887_G1001_V1.5900.16
490_D1246_G1.5890.16
943_G1246_G1.5890.16
68_G93_G1.5880.16
940_D1000_R1.5880.16
1232_Y1246_G1.5870.16
214_D217_G1.5870.16
744_Y901_Y1.5840.16
480_P560_V1.5820.16
571_Q1191_L1.5760.16
453_I1239_I1.5710.16
80_S95_G1.5700.16
289_I362_D1.5690.16
904_D1219_T1.5680.16
891_T1140_A1.5640.16
482_G493_G1.5600.16
1201_G1212_P1.5590.16
225_E253_A1.5590.16
1234_Y1244_P1.5590.16
79_S259_A1.5550.16
225_E256_A1.5540.16
429_G558_G1.5540.16
68_G90_G1.5530.16
66_L76_R1.5520.16
683_G1209_Y1.5510.16
68_G74_L1.5500.16
447_D788_S1.5490.16
78_Y90_G1.5480.16
627_T632_T1.5460.16
280_Y305_N1.5400.16
1206_R1222_P1.5290.16
510_Y994_Y1.5280.16
95_G181_G1.5250.16
436_D1215_G1.5250.16
1212_P1234_Y1.5240.16
884_R940_D1.5210.16
97_K104_L1.5150.15
54_G90_G1.5130.15
72_F104_L1.5090.15
412_K476_S1.5050.15
490_D1152_G1.5040.15
943_G1152_G1.5040.15
1208_R1232_Y1.5000.15
80_S181_G1.5000.15
555_D559_Q1.4990.15
1210_Y1246_G1.4980.15
490_D994_Y1.4970.15
943_G994_Y1.4970.15
1193_G1215_G1.4850.15
357_I368_T1.4830.15
1162_G1211_D1.4810.15
1208_R1244_P1.4760.15
555_D901_Y1.4690.15
160_Q182_P1.4670.15
63_D72_F1.4660.15
79_S461_G1.4650.15
1212_P1221_D1.4620.15
488_E497_Q1.4600.15
649_E1190_R1.4590.15
456_I479_G1.4580.15
490_D879_Y1.4550.15
879_Y943_G1.4550.15
748_G1204_Y1.4540.15
679_H1149_D1.4530.15
48_P58_L1.4520.15
1066_L1180_E1.4500.15
880_S1238_P1.4450.15
880_S1243_D1.4450.15
66_L78_Y1.4380.15
1067_A1149_D1.4360.15
1202_L1238_P1.4350.15
1202_L1243_D1.4350.15
1174_G1197_D1.4290.14
426_D494_R1.4250.14
510_Y939_Y1.4240.14
171_H178_S1.4230.14
720_Y829_G1.4220.14
523_D526_G1.4210.14
1219_T1235_P1.4200.14
78_Y104_L1.4150.14
468_Y699_Y1.4100.14
461_G699_Y1.4050.14
93_G1149_D1.4020.14
1210_Y1230_N1.3960.14
68_G837_Y1.3960.14
885_L1204_Y1.3960.14
494_R907_G1.3950.14
145_G149_L1.3940.14
654_T1093_P1.3920.14
66_L147_A1.3910.14
289_I293_A1.3890.14
904_D1215_G1.3890.14
288_G293_A1.3870.14
908_N1215_G1.3850.14
1197_D1221_D1.3820.14
843_L857_Y1.3790.14
937_Y946_T1.3780.14
139_L215_R1.3780.14
247_L253_A1.3770.14
439_G901_Y1.3750.14
1208_R1215_G1.3720.14
447_D501_P1.3720.14
66_L160_Q1.3700.14
724_G1174_G1.3670.14
66_L104_L1.3650.14
919_S930_A1.3650.14
66_L154_R1.3620.14
944_R996_P1.3620.14
54_G104_L1.3610.14
724_G800_G1.3590.14
494_R637_Y1.3590.14
428_V446_P1.3580.14
800_G1152_G1.3570.14
1082_G1085_D1.3560.14
1230_N1237_N1.3530.14
610_G655_T1.3510.14
720_Y744_Y1.3500.14
880_S1174_G1.3490.14
1193_G1246_G1.3490.14
1216_R1238_P1.3490.14
1216_R1243_D1.3490.14
580_Q817_R1.3470.14
1041_R1232_Y1.3470.14
883_G1175_N1.3460.14
748_G1000_R1.3460.14
1234_Y1237_N1.3450.14
1215_G1246_G1.3420.14
613_N1014_G1.3390.13
974_R1166_W1.3370.13
559_Q579_G1.3370.13
435_T1193_G1.3320.13
860_N987_L1.3260.13
76_R90_G1.3250.13
72_F160_Q1.3250.13
90_G93_G1.3200.13
138_S159_W1.3180.13
1221_D1237_N1.3170.13
63_D134_S1.3170.13
456_I746_S1.3150.13
815_Y969_Y1.3120.13
430_R1158_I1.3110.13
566_E785_I1.3090.13
118_G123_F1.3080.13
890_T914_E1.3080.13
494_R699_Y1.3070.13
534_S541_S1.3060.13
66_L134_S1.3040.13
375_G651_G1.3030.13
1162_G1234_Y1.3010.13
159_W188_W1.2980.13
225_E247_L1.2980.13
724_G1246_G1.2980.13
998_G1174_G1.2970.13
627_T802_L1.2970.13
1197_D1222_P1.2950.13
237_V757_V1.2920.13
679_H1150_H1.2910.13
880_S896_D1.2900.13
644_I1219_T1.2900.13
880_S903_T1.2880.13
837_Y1147_H1.2880.13
1054_T1058_R1.2860.13
744_Y1221_D1.2850.13
490_D493_G1.2850.13
493_G943_G1.2850.13
424_Q433_A1.2830.13
121_L124_E1.2810.13
903_T1047_I1.2790.13
1152_G1208_R1.2790.13
459_P477_A1.2780.13
1048_Y1149_D1.2720.13
647_T839_P1.2700.13
1152_G1238_P1.2690.13
1152_G1243_D1.2690.13
550_T1223_I1.2670.13
939_Y1152_G1.2660.13
468_Y1147_H1.2650.13
1222_P1247_L1.2630.13
76_R217_G1.2630.13
493_G863_G1.2630.13
279_G286_D1.2620.13
208_V1028_G1.2600.13
800_G1174_G1.2590.13
911_P1159_S1.2560.13
247_L251_T1.2550.13
975_L994_Y1.2530.13
66_L178_S1.2500.13
970_D1149_D1.2500.13
72_F78_Y1.2490.13
621_G1150_H1.2490.13
119_R134_S1.2480.13
435_T580_Q1.2450.13
279_G288_G1.2440.13
72_F93_G1.2440.13
368_T1203_Y1.2440.13
1208_R1212_P1.2430.13
1142_K1183_H1.2420.12
275_D279_G1.2380.12
659_D723_R1.2350.12
634_S657_R1.2350.12
469_N888_V1.2340.12
994_Y1208_R1.2340.12
93_G490_D1.2340.12
93_G943_G1.2340.12
293_A1090_V1.2330.12
1173_W1206_R1.2330.12
704_R1197_D1.2320.12
699_Y1197_D1.2320.12
786_P1162_G1.2300.12
247_L256_A1.2280.12
1194_Q1223_I1.2260.12
797_Y974_R1.2180.12
503_G1147_H1.2170.12
970_D1209_Y1.2170.12
704_R992_Y1.2150.12
437_A634_S1.2150.12
994_Y1238_P1.2150.12
994_Y1243_D1.2150.12
888_V963_R1.2140.12
530_T680_D1.2110.12
1209_Y1238_P1.2100.12
1209_Y1243_D1.2100.12
633_R903_T1.2100.12
430_R890_T1.2030.12
635_M875_R1.2020.12
571_Q670_F1.2020.12
288_G294_V1.2010.12
1232_Y1244_P1.2010.12
1237_N1244_P1.2010.12
78_Y118_G1.1990.12
426_D630_G1.1970.12
482_G1152_G1.1970.12
1159_S1202_L1.1960.12
637_Y1202_L1.1920.12
361_Y482_G1.1910.12
54_G72_F1.1910.12
439_G745_D1.1900.12
747_K777_A1.1900.12
399_L643_V1.1900.12
800_G1246_G1.1880.12
880_S1208_R1.1880.12
635_M838_T1.1870.12
160_Q785_I1.1870.12
411_V459_P1.1860.12
998_G1246_G1.1840.12
879_Y1208_R1.1830.12
253_A263_A1.1820.12
940_D944_R1.1810.12
430_R1175_N1.1760.12
744_Y864_E1.1750.12
389_I705_L1.1740.12
209_L461_G1.1740.12
745_D809_D1.1730.12
389_I726_L1.1720.12
542_F880_S1.1710.12
880_S897_I1.1710.12
1187_Q1219_T1.1680.12
461_G621_G1.1670.12
472_S1162_G1.1670.12
389_I1200_S1.1650.12
779_G928_R1.1630.12
879_Y1014_G1.1600.12
745_D901_Y1.1600.12
879_Y1238_P1.1590.12
879_Y1243_D1.1590.12
490_D939_Y1.1590.12
939_Y943_G1.1590.12
669_G901_Y1.1580.12
181_G429_G1.1570.12
822_R909_R1.1570.12
66_L182_P1.1550.12
468_Y802_L1.1530.12
864_E903_T1.1500.12
663_R679_H1.1500.12
1145_L1234_Y1.1480.12
857_Y860_N1.1470.12
1237_N1246_G1.1470.12
129_G144_G1.1460.12
336_F690_D1.1460.12
468_Y940_D1.1460.12
566_E633_R1.1460.12
59_P74_L1.1420.12
901_Y1217_Y1.1410.12
316_W375_G1.1400.12
475_T1218_I1.1380.11
837_Y1027_Y1.1360.11
181_G641_G1.1360.11
405_G618_D1.1350.11
117_G124_E1.1340.11
1208_R1237_N1.1330.11
642_R804_G1.1320.11
446_P939_Y1.1310.11
541_S969_Y1.1310.11
1217_Y1220_Q1.1280.11
1197_D1246_G1.1280.11
461_G501_P1.1270.11
880_S1014_G1.1270.11
237_V716_E1.1260.11
539_L1001_V1.1240.11
838_T888_V1.1240.11
79_S95_G1.1220.11
160_Q188_W1.1210.11
66_L93_G1.1210.11
134_S171_H1.1210.11
554_H1162_G1.1200.11
921_L1003_K1.1190.11
944_R1159_S1.1170.11
490_D1197_D1.1170.11
943_G1197_D1.1170.11
639_A1063_T1.1150.11
669_G1217_Y1.1140.11
792_V1191_L1.1130.11
818_D1149_D1.1110.11
287_N292_S1.1100.11
54_G1174_G1.1050.11
494_R621_G1.1020.11
1152_G1221_D1.1010.11
1202_L1221_D1.1010.11
1204_Y1208_R1.1000.11
279_G293_A1.0990.11
539_L726_L1.0980.11
927_N1046_T1.0980.11
444_Y974_R1.0980.11
54_G182_P1.0960.11
468_Y1202_L1.0960.11
1014_G1071_R1.0960.11
882_T1207_H1.0920.11
418_G868_I1.0910.11
490_D575_Y1.0910.11
575_Y943_G1.0910.11
123_F638_D1.0880.11
429_G1234_Y1.0880.11
579_G1216_R1.0870.11
72_F147_A1.0870.11
861_D1014_G1.0850.11
136_S140_W1.0810.11
96_W1221_D1.0810.11
659_D1149_D1.0800.11
748_G940_D1.0790.11
475_T647_T1.0780.11
79_S93_G1.0760.11
724_G1152_G1.0760.11
475_T836_A1.0750.11
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517_L521_T0.5280.07
99_P104_L0.5280.07
725_W1175_N0.5270.07
596_Y1221_D0.5260.07
154_R182_P0.5260.07
439_G1166_W0.5250.07
481_D888_V0.5250.07
281_T287_N0.5250.07
375_G756_T0.5250.07
426_D490_D0.5250.07
426_D943_G0.5250.07
703_D752_S0.5250.07
439_G706_T0.5240.07
724_G1193_G0.5240.07
104_L176_T0.5240.07
539_L889_H0.5240.07
690_D908_N0.5240.07
679_H726_L0.5240.07
446_P680_D0.5230.07
608_P674_T0.5230.07
835_T851_L0.5230.07
702_A1216_R0.5220.07
853_S899_I0.5220.07
1063_T1176_L0.5220.07
1046_T1055_P0.5210.07
357_I380_Y0.5200.07
1202_L1228_G0.5200.07
496_I832_E0.5190.07
903_T1191_L0.5190.07
147_A182_P0.5190.07
576_D1063_T0.5190.07
172_R225_E0.5180.07
731_H1190_R0.5180.07
969_Y1222_P0.5180.07
562_A1047_I0.5180.07
304_E1087_G0.5170.07
460_D877_Y0.5170.07
800_G939_Y0.5160.07
902_T963_R0.5160.07
1210_Y1244_P0.5160.07
171_H177_N0.5150.07
490_D908_N0.5150.07
908_N943_G0.5150.07
721_D976_V0.5140.07
444_Y1220_Q0.5140.07
659_D840_A0.5140.07
699_Y1150_H0.5140.07
1054_T1060_E0.5140.07
381_Q394_N0.5130.07
880_S994_Y0.5130.07
575_Y1221_D0.5130.07
776_N860_N0.5120.07
1114_E1117_R0.5120.07
940_D1238_P0.5120.07
940_D1243_D0.5120.07
75_S636_E0.5110.07
426_D1014_G0.5110.07
66_L670_F0.5110.07
755_L780_L0.5110.07
449_V918_D0.5100.07
537_G1201_G0.5100.07
160_Q164_E0.5100.07
1222_P1242_I0.5100.07
171_H256_A0.5090.07
822_R1173_W0.5090.07
744_Y880_S0.5080.07
1086_G1089_V0.5080.07
901_Y1221_D0.5080.07
199_L204_P0.5070.07
493_G683_G0.5070.07
797_Y1206_R0.5070.07
338_Y382_Y0.5070.07
863_G1174_G0.5060.07
99_P189_C0.5060.07
494_R679_H0.5060.07
646_L705_L0.5060.07
669_G1215_G0.5060.07
93_G98_M0.5050.07
724_G1208_R0.5050.07
969_Y1183_H0.5050.07
271_S291_L0.5040.07
510_Y1193_G0.5040.07
356_E858_T0.5040.07
890_T1200_S0.5040.07
593_R1002_A0.5030.07
817_R826_R0.5030.07
945_L1145_L0.5030.07
463_A1080_Q0.5030.07
474_L1066_L0.5030.07
641_G1132_Q0.5030.07
1014_G1201_G0.5020.07
676_R805_M0.5020.07
1000_R1197_D0.5020.07
1212_P1237_N0.5020.07
555_D1144_H0.5010.07
808_G877_Y0.5010.07
880_S1197_D0.5010.07
139_L212_L0.5010.07
502_D831_Y0.5000.07
209_L212_L0.5000.07
801_W944_R0.5000.07
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4o9xA 1 0.7946 100 0.675 Contact Map
4iglB 1 0.4116 100 0.77 Contact Map
4iglA 1 0.4639 100 0.894 Contact Map
4ghbA 5 0.1417 97.4 0.981 Contact Map
2ymuA 1 0.4044 96.9 0.983 Contact Map
1gxrA 2 0.2369 96.5 0.984 Contact Map
4ku0D 1 0.0379 96.1 0.984 Contact Map
4ld1A 1 0.1074 95.5 0.985 Contact Map
4jivD 1 0.0372 95.5 0.985 Contact Map
2ojhA 1 0.184 95.4 0.985 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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