GREMLIN Database
RHSA - Protein RhsA
UniProt: P16916 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG10846
Length: 1377 (1173)
Sequences: 111 (79)
Seq/√Len: 2.3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
1221_D1243_D4.2960.67
78_Y95_G4.1980.65
54_G93_G4.1910.64
1221_D1238_P3.8390.57
1238_P1243_D3.8390.57
1221_D1246_G3.7780.56
1243_D1246_G3.7780.56
1208_R1221_D3.6100.52
1208_R1243_D3.6100.52
78_Y93_G3.5440.51
214_D218_R3.5220.50
1234_Y1238_P3.5130.50
54_G95_G3.4270.48
700_D704_R3.3200.46
1238_P1246_G3.3080.45
1221_D1237_N3.2890.45
1237_N1243_D3.2890.45
618_D622_K3.2880.45
1174_G1246_G3.2480.44
879_Y885_L3.1940.43
1208_R1238_P3.1620.42
576_D580_Q3.1500.42
1208_R1246_G3.0980.41
1221_D1234_Y3.0510.40
1234_Y1243_D3.0510.40
860_N864_E2.8920.37
375_G439_G2.8820.36
1212_P1234_Y2.8790.36
68_G90_G2.8560.36
72_F207_R2.8540.36
93_G214_D2.8150.35
1210_Y1237_N2.7450.34
1237_N1246_G2.7410.34
80_S96_W2.7400.34
54_G214_D2.7380.34
54_G78_Y2.7170.33
66_L207_R2.6990.33
1208_R1237_N2.6630.32
744_Y1170_Y2.6630.32
66_L72_F2.6370.32
80_S95_G2.6210.31
375_G435_T2.6040.31
54_G80_S2.5990.31
1174_G1208_R2.5850.31
93_G217_G2.5810.31
1221_D1232_Y2.5140.29
1232_Y1243_D2.5140.29
994_Y1000_R2.5120.29
1204_Y1209_Y2.5020.29
1234_Y1246_G2.4950.29
720_Y775_Y2.4940.29
994_Y998_G2.4890.29
995_D1000_R2.4820.29
1210_Y1221_D2.4760.29
1210_Y1243_D2.4760.29
1174_G1221_D2.4470.28
1174_G1243_D2.4470.28
68_G93_G2.4330.28
706_T756_T2.4190.28
1212_P1238_P2.4120.27
880_S1172_E2.4010.27
1208_R1234_Y2.3970.27
1210_Y1230_N2.3960.27
207_R218_R2.3730.27
745_D749_R2.3730.27
79_S1239_V2.3650.27
80_S93_G2.3520.26
1221_D1244_P2.3170.26
439_G630_G2.2970.26
1210_Y1234_Y2.2830.25
93_G207_R2.2750.25
429_G1174_G2.2510.25
901_Y1216_R2.2450.25
403_G592_T2.2260.24
537_G907_G2.2200.24
429_G1246_G2.2190.24
904_D908_N2.1880.24
68_G74_L2.1740.24
72_F218_R2.1250.23
651_G995_D2.1200.23
669_G1217_Y2.1190.23
93_G187_G2.0950.22
744_Y901_Y2.0900.22
720_Y744_Y2.0800.22
430_R890_T2.0720.22
1030_D1162_G2.0550.22
214_D217_G2.0480.22
1230_N1237_N2.0380.21
426_D430_R2.0280.21
995_D1162_G2.0150.21
731_H738_V2.0070.21
1212_P1246_G2.0050.21
1000_R1204_Y2.0040.21
480_P560_M2.0000.21
1174_G1238_P1.9990.21
1222_P1247_L1.9830.21
1232_Y1238_P1.9790.21
209_L1150_H1.9720.20
114_S117_G1.9620.20
638_D642_R1.9530.20
1234_Y1237_N1.9480.20
429_G943_G1.9470.20
1210_Y1238_P1.9430.20
1232_Y1246_G1.9420.20
880_S888_V1.9380.20
880_S1200_S1.9370.20
490_D943_G1.9320.20
93_G218_R1.9190.20
95_G214_D1.9140.20
209_L426_D1.9060.20
426_D494_R1.8990.19
994_Y1204_Y1.8980.19
684_K703_D1.8960.19
1201_G1246_G1.8920.19
418_G526_G1.8890.19
217_G429_G1.8880.19
638_D904_D1.8850.19
1210_Y1246_G1.8780.19
943_G1208_R1.8760.19
54_G217_G1.8750.19
943_G1221_D1.8700.19
943_G1243_D1.8700.19
1208_R1232_Y1.8700.19
291_L295_W1.8700.19
368_T476_S1.8670.19
207_R214_D1.8520.19
1217_Y1220_Q1.8520.19
1174_G1193_G1.8400.19
217_G490_D1.8360.19
123_F129_G1.8330.19
1215_G1221_D1.8320.19
1215_G1243_D1.8320.19
677_Y995_D1.8260.18
884_R1000_R1.8250.18
1216_R1234_Y1.8210.18
880_S943_G1.8200.18
457_T901_Y1.8190.18
842_Q1151_R1.8070.18
63_D66_L1.8000.18
1216_R1238_P1.7960.18
720_Y943_G1.7840.18
429_G748_G1.7820.18
1215_G1237_N1.7800.18
78_Y214_D1.7780.18
596_Y659_D1.7750.18
1238_P1244_P1.7740.18
54_G218_R1.7740.18
66_L76_R1.7720.18
995_D998_G1.7700.18
1212_P1221_D1.7640.18
1212_P1243_D1.7640.18
1192_P1217_Y1.7620.18
1201_G1234_Y1.7590.18
1201_G1208_R1.7570.18
576_D879_Y1.7460.17
884_R1199_E1.7450.17
1057_I1085_D1.7400.17
884_R970_D1.7380.17
901_Y1215_G1.7380.17
1208_R1244_P1.7300.17
888_V897_I1.7270.17
426_D1152_G1.7240.17
580_Q885_L1.7240.17
575_Y720_Y1.7190.17
1202_L1208_R1.7110.17
1232_Y1237_N1.7080.17
80_S1210_Y1.7040.17
683_G748_G1.7010.17
748_G975_L1.6960.17
884_R940_D1.6910.17
901_Y1217_Y1.6880.17
90_G93_G1.6860.17
776_N780_L1.6810.17
860_N930_A1.6780.17
1173_W1190_R1.6740.17
633_R903_T1.6710.17
439_G745_D1.6680.16
860_N939_Y1.6670.16
537_G908_N1.6610.16
1173_W1207_H1.6610.16
95_G217_G1.6550.16
446_P860_N1.6540.16
944_R996_P1.6460.16
54_G66_L1.6300.16
1221_D1230_N1.6250.16
1230_N1243_D1.6250.16
630_G975_L1.6250.16
54_G207_R1.6200.16
464_S560_M1.6180.16
947_E974_R1.6140.16
78_Y90_G1.6090.16
1216_R1230_N1.6040.16
649_E865_L1.5920.16
558_G800_G1.5870.16
436_D1215_G1.5720.15
78_Y217_G1.5720.15
670_F817_R1.5720.15
637_Y857_Y1.5640.15
494_R786_P1.5610.15
903_T923_M1.5510.15
680_D949_T1.5430.15
1174_G1237_N1.5420.15
111_L114_S1.5390.15
724_G1174_G1.5330.15
879_Y943_G1.5300.15
1174_G1201_G1.5280.15
429_G493_G1.5270.15
187_G207_R1.5230.15
1193_G1246_G1.5220.15
66_L93_G1.5140.15
651_G661_L1.5110.15
435_T580_Q1.5060.15
859_W1210_Y1.4990.15
426_D724_G1.4960.14
901_Y914_E1.4960.14
1000_R1162_G1.4960.14
880_S896_D1.4950.14
1000_R1199_E1.4950.14
436_D721_D1.4930.14
744_Y864_E1.4870.14
54_G187_G1.4860.14
490_D576_D1.4860.14
705_L799_S1.4780.14
78_Y96_W1.4750.14
998_G1202_L1.4720.14
944_R1159_S1.4710.14
294_V886_T1.4710.14
748_G884_R1.4680.14
79_S96_W1.4670.14
800_G829_G1.4670.14
879_Y995_D1.4640.14
389_I606_I1.4630.14
468_Y802_L1.4620.14
74_L90_G1.4610.14
293_A456_I1.4610.14
943_G1238_P1.4610.14
558_G859_W1.4600.14
1224_G1228_G1.4600.14
54_G68_G1.4600.14
1201_G1212_P1.4590.14
1201_G1221_D1.4570.14
1201_G1243_D1.4570.14
1202_L1221_D1.4570.14
1202_L1243_D1.4570.14
78_Y187_G1.4550.14
224_R1158_I1.4500.14
147_A160_Q1.4500.14
501_P1232_Y1.4490.14
721_D901_Y1.4480.14
744_Y775_Y1.4420.14
1201_G1210_Y1.4410.14
1212_P1237_N1.4400.14
108_D111_L1.4370.14
108_D112_I1.4330.14
78_Y207_R1.4320.14
209_L494_R1.4270.14
92_L98_M1.4250.14
721_D1216_R1.4230.14
90_G214_D1.4220.14
453_I818_D1.4200.14
429_G490_D1.4160.14
547_G907_G1.4140.14
943_G1174_G1.4140.14
490_D1152_G1.4120.14
724_G1246_G1.4100.14
995_D1209_Y1.4000.13
651_G1001_V1.3970.13
663_R679_H1.3950.13
429_G724_G1.3940.13
1166_W1217_Y1.3930.13
490_D510_Y1.3910.13
111_L115_D1.3890.13
523_D526_G1.3850.13
943_G1246_G1.3840.13
720_Y786_P1.3820.13
1222_P1234_Y1.3810.13
658_Y720_Y1.3790.13
429_G800_G1.3760.13
217_G510_Y1.3750.13
784_C1234_Y1.3740.13
888_V1172_E1.3700.13
123_F136_S1.3660.13
429_G1208_R1.3640.13
111_L136_S1.3630.13
1215_G1230_N1.3620.13
74_L112_I1.3580.13
1216_R1221_D1.3570.13
1216_R1243_D1.3570.13
580_Q679_H1.3550.13
621_G857_Y1.3550.13
429_G1221_D1.3540.13
429_G1243_D1.3540.13
550_T721_D1.3540.13
1143_I1200_S1.3520.13
699_Y720_Y1.3510.13
66_L218_R1.3500.13
654_T1093_P1.3500.13
975_L1147_H1.3500.13
885_L943_G1.3490.13
251_T260_R1.3490.13
217_G679_H1.3490.13
481_D1153_L1.3490.13
1194_Q1228_G1.3480.13
217_G1174_G1.3470.13
490_D1208_R1.3450.13
910_L1200_S1.3440.13
488_E497_Q1.3420.13
447_D788_S1.3390.13
538_Q1173_W1.3380.13
181_G940_D1.3380.13
490_D857_Y1.3380.13
480_P555_D1.3360.13
475_T647_T1.3360.13
490_D1221_D1.3360.13
490_D1243_D1.3360.13
535_R1173_W1.3320.13
176_T184_W1.3270.13
494_R637_Y1.3270.13
178_S1249_V1.3260.13
290_R295_W1.3230.13
1197_D1208_R1.3220.13
110_T122_Y1.3200.13
112_I115_D1.3180.13
1222_P1244_P1.3160.13
116_N122_Y1.3140.13
482_G829_G1.3120.13
110_T114_S1.3100.13
212_L571_Q1.3080.13
419_S706_T1.3010.13
429_G510_Y1.3010.13
648_S1148_C1.3010.13
662_D821_H1.3010.13
286_D291_L1.2990.12
446_P450_T1.2990.12
217_G1246_G1.2910.12
940_D944_R1.2890.12
817_R1206_R1.2860.12
575_Y1244_P1.2850.12
880_S924_W1.2810.12
940_D1202_L1.2810.12
1000_R1152_G1.2810.12
1143_I1222_P1.2800.12
475_T608_P1.2800.12
844_Q1025_T1.2790.12
1197_D1204_Y1.2790.12
704_R720_Y1.2760.12
748_G994_Y1.2750.12
1194_Q1206_R1.2740.12
1197_D1209_Y1.2730.12
940_D998_G1.2720.12
704_R943_G1.2690.12
63_D72_F1.2650.12
380_Y787_D1.2640.12
490_D786_P1.2640.12
1215_G1234_Y1.2630.12
93_G490_D1.2630.12
426_D447_D1.2630.12
901_Y1194_Q1.2630.12
874_T1001_V1.2620.12
1000_R1209_Y1.2620.12
68_G95_G1.2610.12
1232_Y1244_P1.2560.12
54_G96_W1.2550.12
138_S142_V1.2530.12
80_S214_D1.2520.12
111_L116_N1.2520.12
558_G943_G1.2510.12
376_L382_Y1.2510.12
748_G940_D1.2510.12
1174_G1234_Y1.2470.12
430_R738_V1.2460.12
362_D589_G1.2440.12
945_L1145_L1.2430.12
1204_Y1208_R1.2430.12
1211_D1238_P1.2410.12
1234_Y1244_P1.2410.12
115_D136_S1.2400.12
550_T779_G1.2390.12
461_G621_G1.2390.12
1230_N1234_Y1.2330.12
490_D637_Y1.2330.12
457_T712_G1.2320.12
429_G720_Y1.2320.12
132_G668_T1.2320.12
54_G72_F1.2300.12
890_T1200_S1.2300.12
249_L472_N1.2270.12
459_P477_A1.2270.12
621_G659_D1.2270.12
1215_G1238_P1.2270.12
940_D970_D1.2250.12
648_S1162_G1.2250.12
786_P1014_G1.2250.12
776_N880_S1.2230.12
890_T912_D1.2230.12
429_G880_S1.2230.12
883_G1171_D1.2220.12
748_G1174_G1.2190.12
859_W864_E1.2190.12
54_G90_G1.2180.12
468_Y720_Y1.2170.12
807_L1173_W1.2170.12
394_D478_T1.2130.12
490_D720_Y1.2130.12
785_I944_R1.2080.12
74_L93_G1.2070.12
490_D880_S1.2070.12
800_G1212_P1.2070.12
389_I394_D1.2030.12
891_T1140_A1.2000.12
658_Y785_I1.1990.12
1208_R1215_G1.1980.12
721_D727_T1.1960.12
389_I880_S1.1930.12
382_Y405_A1.1920.11
375_G478_T1.1890.11
68_G78_Y1.1880.11
994_Y999_R1.1880.11
679_H1149_D1.1870.11
880_S1221_D1.1870.11
880_S1243_D1.1870.11
890_T914_E1.1840.11
970_D1189_I1.1840.11
1088_S1117_R1.1840.11
119_R134_S1.1800.11
1208_R1212_P1.1800.11
482_G1246_G1.1740.11
112_I122_Y1.1740.11
748_G1000_R1.1730.11
718_W725_W1.1720.11
1152_G1208_R1.1710.11
93_G96_W1.1700.11
748_G1246_G1.1680.11
482_G1152_G1.1650.11
1197_D1221_D1.1640.11
1197_D1243_D1.1640.11
673_R903_T1.1630.11
68_G187_G1.1620.11
679_H720_Y1.1620.11
700_D720_Y1.1600.11
375_G524_A1.1580.11
1209_Y1221_D1.1570.11
1209_Y1243_D1.1570.11
461_G501_P1.1550.11
1003_K1070_Q1.1540.11
1242_T1254_F1.1540.11
78_Y320_G1.1530.11
812_L989_E1.1520.11
116_N127_F1.1520.11
95_G187_G1.1500.11
543_T969_Y1.1500.11
459_P742_Y1.1490.11
1066_L1180_E1.1470.11
575_Y786_P1.1460.11
998_G1174_G1.1440.11
217_G943_G1.1430.11
510_Y833_L1.1390.11
535_R903_T1.1380.11
669_G901_Y1.1380.11
891_T931_R1.1360.11
1193_G1208_R1.1350.11
435_T1193_G1.1340.11
1052_S1055_P1.1340.11
468_Y699_Y1.1330.11
322_L906_A1.1330.11
869_S1159_S1.1320.11
445_S1037_I1.1320.11
460_D877_Y1.1310.11
538_Q1206_R1.1290.11
969_Y1219_T1.1280.11
663_R1149_D1.1250.11
1152_G1221_D1.1240.11
1152_G1243_D1.1240.11
748_G998_G1.1230.11
534_S540_L1.1230.11
1215_G1246_G1.1230.11
940_D1000_R1.1220.11
975_L1209_Y1.1190.11
426_D663_R1.1180.11
779_G841_G1.1160.11
859_W1208_R1.1160.11
1199_E1204_Y1.1140.11
489_Y1088_S1.1120.11
903_T1172_E1.1120.11
425_F651_G1.1110.11
479_G1191_L1.1110.11
645_R1047_I1.1090.11
827_S973_H1.1090.11
224_R725_W1.1060.11
365_G1149_D1.1060.11
744_Y1208_R1.1050.11
1045_Q1095_L1.1040.11
468_Y940_D1.1020.11
929_I933_A1.1010.11
721_D779_G1.1010.11
720_Y1208_R1.0990.11
721_D1217_Y1.0980.11
857_Y992_Y1.0980.11
943_G1237_N1.0970.11
96_W187_G1.0960.11
68_G214_D1.0950.11
592_T844_Q1.0950.11
389_I705_L1.0930.11
1082_G1162_G1.0930.11
671_D800_G1.0930.11
425_F637_Y1.0920.11
683_G975_L1.0880.11
338_Y391_D1.0870.11
1206_R1217_Y1.0860.11
1194_Q1223_I1.0860.11
883_G1175_N1.0840.11
748_G943_G1.0810.11
93_G123_F1.0810.11
447_D501_P1.0810.11
871_P896_D1.0800.11
884_R937_Y1.0800.11
1150_H1211_D1.0770.11
187_G214_D1.0740.10
1166_W1192_P1.0730.10
493_G683_G1.0730.10
638_D1152_G1.0720.10
748_G995_D1.0710.10
430_R1175_N1.0710.10
617_Y1206_R1.0700.10
643_V903_T1.0670.10
446_P864_E1.0660.10
908_N1230_N1.0650.10
700_D784_C1.0640.10
468_Y489_Y1.0630.10
722_E1003_K1.0620.10
807_L929_I1.0620.10
911_P1159_S1.0620.10
937_Y946_T1.0620.10
1210_Y1244_P1.0600.10
659_D857_Y1.0590.10
477_A746_E1.0580.10
92_L1047_I1.0570.10
727_T969_Y1.0560.10
744_Y860_N1.0560.10
669_G684_K1.0550.10
897_I969_Y1.0540.10
775_Y786_P1.0520.10
121_L134_S1.0510.10
453_I1239_V1.0510.10
461_G712_G1.0510.10
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720_Y787_D0.5350.07
875_R974_R0.5350.07
391_D1143_I0.5340.07
797_Y1154_P0.5340.07
366_R401_T0.5340.07
197_E1003_K0.5330.07
755_Q1056_L0.5330.07
748_G970_D0.5330.07
243_R663_R0.5320.07
715_A787_D0.5320.07
937_Y1000_R0.5320.07
537_G943_G0.5320.07
771_T995_D0.5320.07
877_Y981_T0.5320.07
65_A136_S0.5320.07
786_P903_T0.5320.07
904_D909_R0.5320.07
603_T705_L0.5310.07
680_D1111_V0.5310.07
699_Y775_Y0.5310.07
575_Y706_T0.5310.07
142_V154_R0.5300.07
654_T1203_Y0.5300.07
894_N1163_T0.5300.07
126_L136_S0.5290.07
359_Y1224_G0.5290.07
995_D1204_Y0.5280.07
174_L186_L0.5280.07
429_G1201_G0.5280.07
401_T967_Y0.5270.07
1060_E1186_Q0.5270.07
262_Q782_N0.5260.07
490_D975_L0.5250.07
420_V706_T0.5250.07
775_Y1237_N0.5250.07
817_R1056_L0.5250.07
785_I789_L0.5240.07
417_D641_G0.5240.07
720_Y1246_G0.5240.07
429_G630_G0.5240.07
921_L1218_I0.5240.07
663_R1232_Y0.5230.07
1209_Y1246_G0.5230.07
472_N880_S0.5220.07
334_R338_Y0.5200.07
467_Y880_S0.5200.07
805_M856_D0.5200.07
1041_R1232_Y0.5190.07
318_P1207_H0.5190.07
418_G601_D0.5180.07
571_Q670_F0.5170.07
558_G939_Y0.5170.07
855_R909_R0.5170.07
63_D101_D0.5160.07
347_V389_I0.5160.07
510_Y558_G0.5160.07
855_R1149_D0.5160.07
644_I1219_T0.5150.07
116_N134_S0.5140.07
737_R1151_R0.5140.07
217_G1208_R0.5140.07
784_C1115_S0.5130.07
1093_P1105_E0.5130.07
927_N995_D0.5120.07
108_D124_E0.5120.07
699_Y939_Y0.5110.07
76_R207_R0.5110.07
800_G1234_Y0.5100.07
1067_A1248_E0.5100.07
300_P439_G0.5100.07
331_K341_K0.5100.07
888_V963_R0.5100.07
114_S135_R0.5090.07
218_R247_L0.5090.07
354_R401_T0.5080.07
884_R1147_H0.5070.07
54_G490_D0.5070.07
687_R1063_T0.5070.07
96_W1208_R0.5060.07
493_G863_G0.5060.07
901_Y1230_N0.5060.07
374_A1090_V0.5060.07
579_G1171_D0.5060.07
1201_G1222_P0.5060.07
863_G943_G0.5050.07
65_A132_G0.5050.07
647_T665_I0.5050.07
286_D290_R0.5040.07
475_T668_T0.5040.07
117_G135_R0.5040.07
337_T860_N0.5030.07
91_S456_I0.5020.07
72_F82_R0.5020.07
482_G1174_G0.5020.07
655_T784_C0.5020.07
61_E76_R0.5010.07
754_R1014_G0.5010.07
622_K697_W0.5010.07
54_G429_G0.5000.07
318_P1233_Q0.5000.07
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4o9xA 1 0.8068 100 0.678 Contact Map
4iglB 1 0.4212 100 0.768 Contact Map
4iglA 1 0.467 100 0.924 Contact Map
4ghbA 5 0.1489 97.4 0.981 Contact Map
2ymuA 1 0.411 96.2 0.984 Contact Map
1gxrA 2 0.2397 96.1 0.984 Contact Map
2ojhA 1 0.1859 96 0.984 Contact Map
4qrjA 1 0.2186 95.2 0.985 Contact Map
1jofA 4 0.2171 95.2 0.985 Contact Map
4ld1A 1 0.1097 95.1 0.985 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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