AROE - ECOLI - GREMLIN Contacts

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AROE - Shikimate dehydrogenase (NADP(+))

UniProt:	P15770	Sequences: METYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVTVPFKEEAFARADELTERAALAGAVNTLMRLEDGRLLGDNTDGVGLLSDLERLSFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISGDIPAIPSSLIHPGIYCYDMFYQKGKTPFLAWCEQRGSKRNADGLGMLVAQAAHAFLLWHGVLPDVEPVIKQLQEELSA	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG10077
Length:	272 (259)
Sequences:	6324 (4709)
Seq/√Len:	292.6

ECOLI - AROE YDIB
BACSU - AROE
HALSA - AROE
SULSO - AROE

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
219_K	227_E	4.533	1.00
9_N	37_L	4.076	1.00
76_T	99_D	3.081	1.00
250_L	256_L	2.855	1.00
74_E	97_L	2.850	1.00
85_V	98_G	2.845	1.00
104_V	247_H	2.799	1.00
74_E	95_R	2.769	1.00
210_C	222_F	2.612	1.00
247_H	250_L	2.521	1.00
66_E	132_R	2.491	1.00
90_R	96_L	2.369	1.00
123_L	181_F	2.228	1.00
221_P	225_W	2.165	1.00
134_V	213_M	2.158	1.00
72_A	98_G	2.142	1.00
19_I	245_A	2.111	1.00
72_A	88_L	2.109	1.00
219_K	224_A	2.107	1.00
89_M	251_L	2.030	1.00
106_L	211_Y	2.014	1.00
124_L	135_L	2.012	1.00
79_A	85_V	1.983	1.00
67_E	70_A	1.938	1.00
59_N	248_A	1.918	1.00
111_E	141_L	1.901	1.00
108_S	111_E	1.882	1.00
3_T	34_G	1.855	1.00
210_C	226_C	1.839	1.00
223_L	234_N	1.827	1.00
152_V	156_E	1.822	1.00
122_I	143_C	1.801	1.00
58_A	88_L	1.787	1.00
132_R	161_L	1.777	1.00
69_F	75_L	1.758	1.00
9_N	40_I	1.755	1.00
5_A	36_V	1.744	1.00
77_E	80_A	1.731	1.00
8_G	61_T	1.716	1.00
68_A	88_L	1.711	1.00
106_L	134_V	1.705	1.00
121_R	182_D	1.699	1.00
45_N	48_N	1.690	1.00
68_A	72_A	1.671	1.00
156_E	160_K	1.650	1.00
24_A	31_H	1.624	1.00
99_D	251_L	1.606	1.00
205_H	208_I	1.605	1.00
64_F	67_E	1.600	1.00
76_T	97_L	1.580	1.00
4_Y	31_H	1.580	1.00
108_S	243_A	1.565	1.00
7_F	58_A	1.556	1.00
88_L	96_L	1.555	1.00
42_D	45_N	1.553	1.00
4_Y	24_A	1.536	1.00
75_L	80_A	1.522	1.00
72_A	85_V	1.514	1.00
130_A	213_M	1.498	1.00
87_T	101_T	1.491	1.00
121_R	146_T	1.490	1.00
33_Y	59_N	1.482	1.00
123_L	148_T	1.468	1.00
127_A	149_N	1.466	1.00
44_I	48_N	1.453	1.00
82_A	103_G	1.442	1.00
4_Y	56_K	1.441	1.00
49_A	52_S	1.436	1.00
146_T	181_F	1.435	1.00
109_D	211_Y	1.417	1.00
50_F	55_G	1.396	1.00
73_D	95_R	1.367	1.00
151_T	154_R	1.347	1.00
6_V	35_R	1.344	1.00
109_D	239_G	1.341	1.00
10_P	13_H	1.340	1.00
78_R	99_D	1.338	1.00
62_V	189_S	1.337	1.00
22_Q	26_Q	1.333	1.00
9_N	64_F	1.307	1.00
78_R	140_S	1.304	1.00
9_N	39_P	1.300	1.00
38_A	46_T	1.300	1.00
224_A	228_Q	1.299	1.00
6_V	11_I	1.276	1.00
81_L	140_S	1.273	1.00
208_I	231_S	1.257	1.00
39_P	42_D	1.257	1.00
227_E	234_N	1.246	1.00
152_V	172_S	1.222	1.00
243_A	259_V	1.219	1.00
12_A	37_L	1.211	1.00
120_L	182_D	1.203	1.00
131_S	187_A	1.202	1.00
149_N	189_S	1.202	1.00
103_G	137_P	1.194	1.00
135_L	162_F	1.186	1.00
51_F	90_R	1.184	1.00
3_T	32_P	1.181	1.00
89_M	99_D	1.172	1.00
75_L	98_G	1.171	1.00
122_I	138_L	1.170	1.00
5_A	58_A	1.165	1.00
112_R	243_A	1.156	1.00
146_T	171_L	1.151	1.00
136_L	140_S	1.150	1.00
209_Y	235_A	1.148	1.00
51_F	96_L	1.147	1.00
113_L	235_A	1.144	1.00
138_L	185_I	1.142	1.00
191_G	214_F	1.142	1.00
75_L	79_A	1.141	1.00
257_P	262_V	1.139	1.00
249_F	253_H	1.136	1.00
7_F	60_V	1.133	1.00
50_F	58_A	1.124	1.00
18_F	22_Q	1.101	1.00
24_A	249_F	1.091	1.00
121_R	144_A	1.087	1.00
29_I	253_H	1.086	1.00
26_Q	261_P	1.083	1.00
89_M	92_E	1.074	1.00
104_V	108_S	1.067	1.00
115_F	209_Y	1.064	1.00
106_L	185_I	1.057	1.00
225_W	228_Q	1.055	1.00
21_Q	32_P	1.050	1.00
22_Q	25_Q	1.050	1.00
81_L	136_L	1.049	1.00
43_F	68_A	1.044	1.00
226_C	231_S	1.034	1.00
225_W	229_R	1.029	1.00
11_I	37_L	1.007	1.00
40_I	67_E	1.001	1.00
260_E	264_K	0.997	1.00
11_I	14_S	0.994	1.00
68_A	85_V	0.992	1.00
44_I	71_R	0.991	1.00
75_L	85_V	0.981	1.00
187_A	213_M	0.979	1.00
221_P	224_A	0.979	1.00
41_N	67_E	0.977	1.00
108_S	247_H	0.977	1.00
197_P	221_P	0.976	1.00
258_D	261_P	0.974	1.00
157_E	161_L	0.964	1.00
38_A	64_F	0.961	1.00
51_F	73_D	0.955	1.00
36_V	55_G	0.955	1.00
172_S	175_E	0.952	1.00
107_L	111_E	0.951	1.00
69_F	72_A	0.950	1.00
124_L	131_S	0.948	1.00
89_M	97_L	0.941	1.00
15_K	18_F	0.935	1.00
246_A	259_V	0.922	1.00
239_G	243_A	0.920	1.00
27_L	255_V	0.914	1.00
43_F	71_R	0.914	1.00
72_A	75_L	0.913	1.00
242_V	246_A	0.913	1.00
49_A	53_A	0.911	1.00
135_L	145_V	0.908	1.00
188_T	191_G	0.904	1.00
27_L	249_F	0.902	1.00
184_I	208_I	0.901	1.00
44_I	67_E	0.893	1.00
193_S	196_I	0.884	1.00
21_Q	25_Q	0.881	1.00
152_V	170_A	0.881	1.00
108_S	112_R	0.875	1.00
23_F	27_L	0.873	1.00
8_G	11_I	0.872	1.00
129_G	133_G	0.870	1.00
159_A	163_A	0.869	1.00
107_L	137_P	0.866	1.00
90_R	94_G	0.855	1.00
66_E	154_R	0.851	1.00
127_A	147_I	0.848	1.00
109_D	243_A	0.845	1.00
46_T	49_A	0.842	1.00
47_L	71_R	0.837	1.00
107_L	140_S	0.837	1.00
60_V	64_F	0.834	1.00
130_A	187_A	0.829	1.00
214_F	220_T	0.820	1.00
77_E	81_L	0.814	1.00
92_E	97_L	0.807	1.00
201_S	225_W	0.806	1.00
19_I	241_L	0.805	1.00
149_N	154_R	0.795	0.99
153_S	157_E	0.792	0.99
22_Q	261_P	0.792	0.99
121_R	180_E	0.792	0.99
219_K	223_L	0.789	0.99
138_L	143_C	0.789	0.99
12_A	35_R	0.787	0.99
105_G	240_M	0.787	0.99
74_E	80_A	0.785	0.99
149_N	155_A	0.781	0.99
4_Y	253_H	0.780	0.99
175_E	178_G	0.779	0.99
58_A	68_A	0.777	0.99
148_T	171_L	0.772	0.99
154_R	157_E	0.772	0.99
23_F	249_F	0.765	0.99
29_I	249_F	0.765	0.99
159_A	168_I	0.764	0.99
84_A	100_N	0.761	0.99
247_H	251_L	0.759	0.99
20_H	245_A	0.758	0.99
123_L	184_I	0.757	0.99
7_F	46_T	0.756	0.99
92_E	95_R	0.755	0.99
62_V	192_I	0.753	0.99
46_T	53_A	0.753	0.99
201_S	228_Q	0.748	0.99
56_K	92_E	0.747	0.99
112_R	239_G	0.744	0.99
153_S	156_E	0.741	0.99
43_F	67_E	0.739	0.99
201_S	229_R	0.738	0.99
23_F	262_V	0.736	0.99
131_S	135_L	0.736	0.99
194_G	221_P	0.732	0.99
194_G	197_P	0.732	0.99
66_E	70_A	0.730	0.99
209_Y	232_K	0.730	0.99
183_L	209_Y	0.729	0.99
125_I	188_T	0.728	0.99
82_A	136_L	0.727	0.99
213_M	240_M	0.726	0.99
162_F	166_G	0.720	0.99
148_T	173_M	0.719	0.99
72_A	96_L	0.716	0.99
3_T	53_A	0.713	0.99
15_K	216_Q	0.710	0.99
125_I	173_M	0.709	0.99
115_F	183_L	0.708	0.99
47_L	68_A	0.704	0.99
73_D	96_L	0.704	0.99
117_R	120_L	0.704	0.99
204_I	210_C	0.704	0.99
113_L	232_K	0.703	0.99
47_L	51_F	0.700	0.99
7_F	38_A	0.699	0.99
84_A	133_G	0.695	0.99
173_M	176_L	0.695	0.99
82_A	133_G	0.693	0.99
186_N	222_F	0.691	0.98
124_L	147_I	0.691	0.98
26_Q	258_D	0.690	0.98
210_C	223_L	0.690	0.98
235_A	239_G	0.689	0.98
117_R	143_C	0.687	0.98
207_G	231_S	0.686	0.98
200_P	203_L	0.684	0.98
58_A	90_R	0.681	0.98
192_I	214_F	0.679	0.98
219_K	234_N	0.678	0.98
20_H	87_T	0.677	0.98
13_H	62_V	0.672	0.98
218_G	236_D	0.672	0.98
135_L	147_I	0.671	0.98
157_E	160_K	0.669	0.98
247_H	256_L	0.666	0.98
202_S	229_R	0.665	0.98
5_A	35_R	0.663	0.98
68_A	71_R	0.661	0.98
120_L	144_A	0.660	0.98
214_F	236_D	0.660	0.98
36_V	46_T	0.657	0.98
48_N	51_F	0.657	0.98
204_I	225_W	0.657	0.98
76_T	251_L	0.654	0.98
107_L	141_L	0.653	0.98
108_S	250_L	0.651	0.98
44_I	70_A	0.651	0.98
103_G	140_S	0.648	0.98
103_G	136_L	0.646	0.98
109_D	113_L	0.645	0.98
82_A	100_N	0.644	0.98
77_E	140_S	0.643	0.98
43_F	64_F	0.643	0.98
151_T	189_S	0.641	0.98
103_G	107_L	0.640	0.98
22_Q	262_V	0.638	0.97
139_L	145_V	0.636	0.97
239_G	263_I	0.633	0.97
20_H	24_A	0.632	0.97
87_T	248_A	0.632	0.97
238_L	242_V	0.630	0.97
125_I	184_I	0.630	0.97
9_N	41_N	0.629	0.97
159_A	170_A	0.626	0.97
3_T	36_V	0.625	0.97
122_I	183_L	0.622	0.97
29_I	255_V	0.618	0.97
186_N	214_F	0.614	0.97
33_Y	87_T	0.613	0.97
121_R	181_F	0.612	0.97
125_I	148_T	0.611	0.97
204_I	231_S	0.610	0.97
162_F	165_T	0.610	0.97
223_L	236_D	0.609	0.97
45_N	49_A	0.608	0.97
127_A	151_T	0.607	0.97
6_V	59_N	0.604	0.97
119_G	144_A	0.604	0.97
116_I	120_L	0.602	0.96
139_L	162_F	0.602	0.96
109_D	235_A	0.599	0.96
112_R	263_I	0.597	0.96
110_L	235_A	0.596	0.96
110_L	138_L	0.596	0.96
122_I	185_I	0.594	0.96
258_D	262_V	0.585	0.96
124_L	187_A	0.584	0.96
185_I	213_M	0.582	0.96
249_F	257_P	0.580	0.96
219_K	236_D	0.578	0.96
105_G	109_D	0.576	0.95
7_F	43_F	0.573	0.95
172_S	176_L	0.573	0.95
118_P	142_D	0.572	0.95
204_I	229_R	0.570	0.95
7_F	64_F	0.570	0.95
88_L	98_G	0.568	0.95
137_P	141_L	0.566	0.95
81_L	161_L	0.566	0.95
5_A	55_G	0.562	0.95
248_A	252_W	0.561	0.95
78_R	103_G	0.559	0.95
250_L	257_P	0.558	0.95
190_S	214_F	0.558	0.95
3_T	54_G	0.556	0.95
9_N	13_H	0.553	0.94
261_P	264_K	0.550	0.94
193_S	216_Q	0.550	0.94
21_Q	30_E	0.546	0.94
181_F	184_I	0.545	0.94
69_F	79_A	0.544	0.94
184_I	210_C	0.543	0.94
146_T	169_Q	0.543	0.94
131_S	149_N	0.541	0.94
18_F	35_R	0.541	0.94
188_T	192_I	0.541	0.94
246_A	262_V	0.540	0.94
32_P	35_R	0.540	0.94
78_R	136_L	0.539	0.94
113_L	239_G	0.539	0.94
192_I	195_D	0.538	0.94
125_I	199_I	0.537	0.93
23_F	257_P	0.535	0.93
113_L	211_Y	0.533	0.93
62_V	214_F	0.533	0.93
160_K	164_H	0.533	0.93
55_G	58_A	0.533	0.93
90_R	95_R	0.532	0.93
152_V	155_A	0.532	0.93
81_L	139_L	0.530	0.93
127_A	154_R	0.530	0.93
134_V	185_I	0.530	0.93
155_A	159_A	0.529	0.93
24_A	252_W	0.529	0.93
6_V	14_S	0.527	0.93
218_G	238_L	0.526	0.93
135_L	158_L	0.526	0.93
54_G	90_R	0.525	0.93
11_I	61_T	0.524	0.93
103_G	134_V	0.523	0.93
11_I	216_Q	0.523	0.93
21_Q	34_G	0.522	0.92
130_A	133_G	0.518	0.92
3_T	35_R	0.512	0.92
60_V	88_L	0.512	0.92
124_L	138_L	0.512	0.92
74_E	77_E	0.512	0.92
216_Q	241_L	0.512	0.92
111_E	117_R	0.511	0.92
38_A	49_A	0.511	0.92
59_N	87_T	0.511	0.92
147_I	158_L	0.510	0.92
259_V	263_I	0.509	0.92
40_I	64_F	0.509	0.92
10_P	64_F	0.504	0.91
190_S	196_I	0.504	0.91
110_L	209_Y	0.500	0.91

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1npyA	1	0.9522	100	0.202	Contact Map
4xijA	1	0.9412	100	0.213	Contact Map
3t4eA	2	0.9853	100	0.22	Contact Map
2o7sA	2	0.9449	100	0.239	Contact Map
3phhA	1	0.9191	100	0.241	Contact Map
3pwzA	1	0.989	100	0.248	Contact Map
3tnlA	2	0.9743	100	0.249	Contact Map
3fbtA	2	0.9706	100	0.27	Contact Map
3jyoA	2	0.9853	100	0.271	Contact Map
2d5cA	2	0.9632	100	0.276	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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