GREMLIN Database
CSRD - RNase E specificity factor CsrD
UniProt: P13518 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG10018
Length: 646 (503)
Sequences: 9470 (7516)
Seq/√Len: 335.1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
429_R636_N4.8131.00
222_S226_Q3.8621.00
570_P574_R3.8471.00
466_S504_Q3.8281.00
628_A631_Q3.6961.00
462_R497_W3.5161.00
499_R539_L3.5031.00
537_N564_E3.4681.00
296_Y299_A3.3911.00
461_D488_S3.3851.00
413_R436_F3.2571.00
395_G446_E3.2321.00
605_V622_G3.0331.00
594_S620_T2.9351.00
416_Q471_L2.8991.00
608_R612_Q2.7761.00
473_R477_E2.7021.00
437_D440_E2.5971.00
402_L437_D2.5741.00
238_F310_A2.5401.00
359_D362_Q2.5331.00
467_R470_P2.5101.00
514_I565_L2.5071.00
259_M349_I2.4781.00
476_P512_R2.4621.00
613_T617_R2.4401.00
501_T505_C2.3861.00
559_K582_N2.3211.00
484_V494_F2.2841.00
471_L633_L2.2701.00
433_C464_Q2.2061.00
213_H217_D2.1841.00
544_A565_L2.1691.00
415_Y632_P2.1641.00
611_W627_F2.1571.00
451_V460_Y2.1441.00
420_V627_F2.1241.00
280_E283_F2.0281.00
533_I543_V2.0151.00
472_L508_S2.0131.00
611_W622_G1.9861.00
471_L475_W1.9811.00
463_L467_R1.9791.00
632_P635_T1.9691.00
187_T191_W1.9551.00
436_F441_E1.9441.00
259_M325_A1.9371.00
587_Q595_G1.9161.00
242_L360_T1.9011.00
257_I353_A1.8791.00
466_S505_C1.8771.00
413_R441_E1.8651.00
469_I501_T1.8641.00
410_G467_R1.8621.00
577_E583_Q1.8521.00
467_R471_L1.8241.00
405_Q409_R1.8061.00
412_P433_C1.8061.00
233_N237_F1.8001.00
611_W615_I1.7921.00
583_Q613_T1.7821.00
414_L464_Q1.7791.00
414_L463_L1.7781.00
377_Q383_A1.7631.00
587_Q617_R1.7611.00
577_E609_S1.7521.00
590_V617_R1.7431.00
625_D630_S1.7171.00
214_S217_D1.7131.00
374_A383_A1.7111.00
542_R564_E1.6941.00
466_S501_T1.6801.00
433_C460_Y1.6791.00
607_S610_E1.6781.00
325_A351_I1.6731.00
611_W626_F1.6651.00
419_A565_L1.6651.00
419_A621_G1.6601.00
415_Y441_E1.6521.00
284_T336_P1.6461.00
317_T320_E1.6351.00
509_Q512_R1.6231.00
280_E339_K1.6111.00
357_G366_H1.6031.00
559_K575_N1.6021.00
293_M301_L1.6001.00
284_T287_N1.5981.00
608_R626_F1.5971.00
396_N453_Q1.5891.00
241_Q300_L1.5801.00
222_S231_G1.5661.00
205_E209_A1.5651.00
565_L601_Y1.5611.00
237_F241_Q1.5591.00
313_L324_I1.5591.00
411_G437_D1.5541.00
265_D379_G1.5541.00
475_W633_L1.5441.00
184_V192_P1.5411.00
599_Q620_T1.5391.00
337_N342_D1.5381.00
476_P509_Q1.5351.00
261_I347_I1.5201.00
257_I321_A1.5001.00
172_A175_I1.5001.00
577_E613_T1.4961.00
168_L171_R1.4931.00
419_A428_H1.4851.00
426_V639_K1.4781.00
287_N290_S1.4581.00
419_A514_I1.4521.00
502_L541_V1.4411.00
219_L223_Y1.4281.00
599_Q621_G1.4231.00
182_S202_L1.4171.00
281_Q345_D1.4061.00
433_C463_L1.3961.00
405_Q411_G1.3951.00
472_L480_L1.3781.00
285_L332_V1.3771.00
484_V515_I1.3741.00
199_L203_L1.3731.00
478_E637_V1.3691.00
264_P348_H1.3681.00
545_V563_V1.3671.00
498_L536_V1.3651.00
486_V520_A1.3631.00
631_Q639_K1.3621.00
241_Q244_T1.3611.00
427_H621_G1.3551.00
322_E384_I1.3501.00
563_V598_T1.3401.00
576_I613_T1.3371.00
635_T638_K1.3251.00
514_I544_A1.3241.00
332_V347_I1.3231.00
399_W450_M1.3221.00
414_L468_L1.3091.00
590_V619_V1.3071.00
499_R535_L1.3061.00
337_N340_M1.3051.00
270_S278_V1.3041.00
168_L172_A1.3011.00
237_F300_L1.2961.00
468_L480_L1.2921.00
321_A325_A1.2841.00
612_Q616_Q1.2821.00
211_E214_S1.2801.00
158_L162_L1.2771.00
263_L285_L1.2771.00
566_L593_C1.2751.00
612_Q615_I1.2681.00
212_Q215_R1.2671.00
565_L599_Q1.2661.00
608_R611_W1.2581.00
169_E173_T1.2471.00
445_A570_P1.2471.00
631_Q635_T1.2451.00
326_G330_K1.2441.00
225_A236_L1.2421.00
497_W501_T1.2401.00
351_I384_I1.2381.00
354_W363_V1.2361.00
322_E326_G1.2351.00
530_Q534_R1.2321.00
474_Y478_E1.2301.00
472_L476_P1.2261.00
374_A381_S1.2261.00
221_R225_A1.2251.00
329_I349_I1.2251.00
411_G435_I1.2221.00
622_G627_F1.2211.00
500_D504_Q1.2161.00
471_L474_Y1.2141.00
593_C600_V1.2141.00
198_A201_T1.1991.00
245_L256_G1.1941.00
238_F302_A1.1931.00
414_L433_C1.1851.00
176_L179_E1.1801.00
587_Q591_E1.1801.00
304_Y310_A1.1731.00
260_M371_T1.1731.00
356_S384_I1.1721.00
260_M310_A1.1721.00
421_T425_Q1.1681.00
159_Q162_L1.1651.00
470_P505_C1.1611.00
373_N376_L1.1591.00
206_I209_A1.1591.00
284_T288_L1.1581.00
213_H216_L1.1551.00
268_M400_R1.1541.00
373_N383_A1.1491.00
289_L301_L1.1431.00
265_D268_M1.1431.00
437_D442_V1.1421.00
628_A639_K1.1421.00
468_L482_I1.1321.00
331_A334_T1.1311.00
494_F498_L1.1241.00
403_I412_P1.1221.00
419_A601_Y1.1221.00
570_P604_G1.1201.00
281_Q336_P1.1151.00
502_L510_R1.1131.00
419_A481_A1.1101.00
215_R219_L1.1051.00
248_D314_P1.1041.00
219_L222_S1.1041.00
476_P479_N1.0951.00
469_I513_I1.0901.00
602_A619_V1.0871.00
333_D380_N1.0831.00
473_R505_C1.0811.00
495_Q532_V1.0811.00
280_E284_T1.0721.00
186_G192_P1.0711.00
411_G438_G1.0701.00
195_T199_L1.0651.00
238_F312_L1.0611.00
154_A157_W1.0561.00
448_M457_S1.0561.00
499_R503_M1.0551.00
565_L621_G1.0551.00
182_S196_S1.0511.00
277_Q341_L1.0501.00
498_L515_I1.0481.00
490_I524_Q1.0461.00
470_P474_Y1.0431.00
176_L194_R1.0421.00
275_H368_E1.0401.00
466_S470_P1.0391.00
197_S201_T1.0351.00
243_A360_T1.0331.00
454_F458_E1.0321.00
465_I501_T1.0301.00
172_A176_L1.0261.00
270_S306_R1.0251.00
325_A382_W1.0231.00
481_A514_I1.0171.00
346_M380_N1.0161.00
226_Q237_F1.0121.00
263_L347_I1.0121.00
306_R372_R1.0101.00
362_Q366_H1.0051.00
288_L336_P1.0041.00
164_G168_L1.0041.00
402_L439_N1.0021.00
276_S361_E1.0021.00
412_P463_L1.0021.00
332_V336_P1.0011.00
265_D400_R0.9991.00
329_I382_W0.9991.00
456_L459_E0.9981.00
273_W341_L0.9981.00
530_Q560_E0.9971.00
184_V199_L0.9941.00
338_N343_R0.9931.00
459_E462_R0.9921.00
190_E193_P0.9911.00
594_S600_V0.9891.00
227_D303_R0.9891.00
413_R632_P0.9851.00
373_N377_Q0.9781.00
602_A614_L0.9771.00
525_H528_R0.9751.00
195_T200_D0.9741.00
259_M311_A0.9731.00
534_R538_A0.9721.00
167_L171_R0.9721.00
475_W637_V0.9711.00
452_L457_S0.9691.00
482_I513_I0.9681.00
495_Q535_L0.9661.00
262_R375_G0.9661.00
576_I586_V0.9631.00
422_R615_I0.9591.00
261_I311_A0.9551.00
513_I541_V0.9501.00
200_D206_I0.9481.00
505_C508_S0.9441.00
217_D221_R0.9431.00
465_I498_L0.9431.00
342_D405_Q0.9391.00
633_L637_V0.9351.00
225_A240_N0.9341.00
308_D368_E0.9321.00
495_Q499_R0.9321.00
264_P379_G0.9301.00
496_R535_L0.9301.00
406_M412_P0.9291.00
514_I542_R0.9271.00
179_E183_N0.9191.00
420_V639_K0.9191.00
194_R207_Q0.9181.00
196_S199_L0.9181.00
184_V196_S0.9161.00
526_I561_L0.9151.00
292_F331_A0.9151.00
458_E491_R0.9151.00
366_H390_P0.9151.00
245_L314_P0.9131.00
322_E382_W0.9131.00
400_R404_E0.9131.00
183_N196_S0.9121.00
140_L143_A0.9111.00
469_I505_C0.9091.00
577_E607_S0.9081.00
293_M311_A0.9061.00
203_L210_R0.9011.00
590_V594_S0.9001.00
523_G557_W0.8991.00
352_C366_H0.8981.00
431_L480_L0.8981.00
471_L637_V0.8951.00
185_L196_S0.8931.00
368_E372_R0.8921.00
241_Q302_A0.8921.00
424_G615_I0.8921.00
277_Q280_E0.8901.00
154_A158_L0.8881.00
489_L533_I0.8871.00
183_N187_T0.8841.00
262_R307_S0.8841.00
526_I529_L0.8801.00
502_L508_S0.8791.00
283_F287_N0.8761.00
216_L220_I0.8761.00
369_S389_L0.8761.00
601_Y621_G0.8741.00
251_K296_Y0.8741.00
410_G466_S0.8731.00
515_I541_V0.8731.00
193_P196_S0.8721.00
462_R466_S0.8701.00
588_S595_G0.8691.00
162_L166_E0.8691.00
296_Y327_Q0.8681.00
579_R582_N0.8661.00
348_H379_G0.8661.00
421_T620_T0.8661.00
220_I223_Y0.8651.00
403_I451_V0.8651.00
386_D389_L0.8651.00
254_T315_H0.8601.00
403_I406_M0.8601.00
140_L144_I0.8601.00
246_L354_W0.8591.00
286_T301_L0.8591.00
239_D361_E0.8571.00
256_G354_W0.8561.00
404_E456_L0.8541.00
237_F240_N0.8541.00
442_V449_P0.8531.00
250_E358_Q0.8531.00
296_Y324_I0.8521.00
262_R372_R0.8511.00
416_Q431_L0.8511.00
533_I562_N0.8501.00
310_A364_M0.8491.00
436_F440_E0.8491.00
240_N244_T0.8481.00
195_T203_L0.8481.00
465_I482_I0.8461.00
405_Q408_S0.8461.00
176_L180_R0.8461.00
199_L202_L0.8451.00
430_E483_Q0.8441.00
165_Q168_L0.8431.00
267_N271_D0.8411.00
508_S513_I0.8391.00
591_E595_G0.8391.00
293_M299_A0.8391.00
200_D207_Q0.8381.00
173_T177_N0.8381.00
218_T221_R0.8361.00
321_A353_A0.8311.00
292_F327_Q0.8311.00
577_E610_E0.8301.00
422_R620_T0.8291.00
421_T427_H0.8291.00
547_Q603_T0.8291.00
242_L312_L0.8281.00
473_R476_P0.8271.00
243_A247_E0.8261.00
292_F328_L0.8251.00
265_D453_Q0.8231.00
232_L286_T0.8221.00
270_S279_E0.8201.00
351_I382_W0.8201.00
528_R532_V0.8171.00
285_L336_P0.8171.00
238_F242_L0.8151.00
233_N300_L0.8131.00
473_R506_E0.8131.00
584_L595_G0.8101.00
275_H372_R0.8051.00
288_L335_L0.8031.00
267_N372_R0.8021.00
269_L281_Q0.8021.00
532_V535_L0.7991.00
269_L278_V0.7981.00
195_T210_R0.7981.00
493_R497_W0.7941.00
325_A329_I0.7911.00
344_D404_E0.7901.00
216_L219_L0.7901.00
613_T616_Q0.7901.00
271_D372_R0.7891.00
454_F457_S0.7891.00
489_L521_D0.7891.00
147_I154_A0.7871.00
550_L571_G0.7871.00
362_Q365_E0.7811.00
515_I543_V0.7801.00
491_R497_W0.7801.00
313_L321_A0.7791.00
200_D203_L0.7761.00
415_Y436_F0.7751.00
316_R321_A0.7741.00
451_V457_S0.7741.00
159_Q163_A0.7731.00
501_T504_Q0.7691.00
324_I327_Q0.7671.00
378_G381_S0.7661.00
316_R320_E0.7651.00
291_T331_A0.7651.00
259_M313_L0.7641.00
398_R402_L0.7641.00
191_W196_S0.7641.00
444_S447_Y0.7631.00
171_R175_I0.7591.00
574_R610_E0.7591.00
585_L592_A0.7581.00
605_V614_L0.7571.00
269_L343_R0.7541.00
262_R270_S0.7541.00
420_V424_G0.7531.00
192_P199_L0.7521.00
410_G463_L0.7480.99
170_T174_R0.7470.99
241_Q245_L0.7460.99
502_L505_C0.7410.99
174_R179_E0.7400.99
330_K333_D0.7400.99
583_Q587_Q0.7380.99
196_S200_D0.7380.99
244_T314_P0.7370.99
431_L468_L0.7360.99
404_E459_E0.7340.99
387_D391_E0.7330.99
287_N291_T0.7320.99
307_S375_G0.7320.99
394_R398_R0.7310.99
143_A154_A0.7300.99
260_M367_A0.7300.99
408_S459_E0.7290.99
181_G184_V0.7270.99
194_R197_S0.7270.99
161_Q164_G0.7250.99
228_V236_L0.7240.99
559_K579_R0.7240.99
155_V159_Q0.7240.99
190_E196_S0.7240.99
531_P535_L0.7230.99
249_Q256_G0.7230.99
451_V455_G0.7220.99
497_W500_D0.7210.99
271_D368_E0.7200.99
166_E169_E0.7170.99
475_W636_N0.7160.99
385_Y389_L0.7150.99
305_H308_D0.7150.99
429_R480_L0.7150.99
321_A351_I0.7140.99
350_G367_A0.7140.99
185_L195_T0.7140.99
142_G154_A0.7130.99
489_L494_F0.7090.99
462_R501_T0.7090.99
200_D210_R0.7080.99
424_G611_W0.7070.99
399_W402_L0.7050.99
192_P196_S0.7030.99
186_G203_L0.7000.99
176_L196_S0.7000.99
239_D243_A0.6980.99
575_N578_K0.6970.99
329_I347_I0.6970.99
460_Y464_Q0.6970.99
418_P426_V0.6970.99
568_L589_L0.6970.99
377_Q381_S0.6940.99
311_A328_L0.6920.99
443_S449_P0.6910.99
465_I513_I0.6880.99
625_D629_S0.6860.99
164_G167_L0.6850.99
185_L192_P0.6830.99
495_Q539_L0.6820.99
492_P528_R0.6820.99
249_Q354_W0.6810.99
318_L322_E0.6800.99
390_P394_R0.6790.99
144_I154_A0.6780.99
153_L156_R0.6780.99
590_V600_V0.6760.99
531_P534_R0.6750.99
301_L311_A0.6750.99
240_N300_L0.6740.99
319_K322_E0.6740.99
276_S365_E0.6740.99
154_A162_L0.6740.99
393_G397_V0.6740.99
518_A547_Q0.6730.99
414_L431_L0.6730.99
266_F282_F0.6720.99
225_A237_F0.6720.99
277_Q343_R0.6720.99
413_R634_D0.6710.99
326_G329_I0.6690.99
385_Y390_P0.6680.99
186_G199_L0.6660.99
469_I508_S0.6660.99
256_G312_L0.6650.99
169_E172_A0.6650.99
290_S301_L0.6640.99
196_S204_R0.6640.99
156_R159_Q0.6640.99
530_Q562_N0.6610.99
220_I225_A0.6610.99
400_R454_F0.6610.99
406_M411_G0.6600.99
573_V602_A0.6580.99
186_G190_E0.6570.99
534_R562_N0.6570.99
277_Q338_N0.6570.99
325_A349_I0.6550.99
585_L589_L0.6530.99
526_I530_Q0.6520.99
465_I515_I0.6500.99
388_S392_K0.6490.99
330_K334_T0.6490.99
420_V426_V0.6490.99
306_R368_E0.6470.99
559_K585_L0.6470.99
407_L460_Y0.6450.99
273_W343_R0.6440.98
557_W561_L0.6430.98
183_N194_R0.6410.98
175_I180_R0.6400.98
566_L598_T0.6400.98
472_L512_R0.6390.98
264_P375_G0.6390.98
326_G382_W0.6390.98
214_S218_T0.6350.98
154_A159_Q0.6340.98
498_L541_V0.6320.98
353_A384_I0.6310.98
182_S186_G0.6300.98
329_I380_N0.6300.98
474_Y477_E0.6300.98
489_L532_V0.6300.98
496_R499_R0.6300.98
181_G198_A0.6290.98
580_T583_Q0.6290.98
175_I179_E0.6290.98
264_P346_M0.6290.98
199_L210_R0.6290.98
637_V640_Y0.6270.98
211_E215_R0.6270.98
631_Q636_N0.6270.98
182_S199_L0.6260.98
496_R500_D0.6260.98
445_A449_P0.6260.98
614_L619_V0.6250.98
356_S366_H0.6240.98
575_N579_R0.6240.98
636_N639_K0.6230.98
373_N392_K0.6230.98
172_A180_R0.6220.98
264_P380_N0.6220.98
320_E323_S0.6210.98
264_P378_G0.6200.98
576_I583_Q0.6200.98
259_M351_I0.6180.98
448_M518_A0.6180.98
458_E488_S0.6180.98
202_L206_I0.6160.98
235_R368_E0.6150.98
182_S185_L0.6140.98
195_T198_A0.6130.98
483_Q546_N0.6100.98
592_A596_T0.6100.98
270_S307_S0.6090.98
235_R279_E0.6080.98
240_N243_A0.6080.98
391_E395_G0.6060.98
147_I150_M0.6060.98
260_M304_Y0.6050.98
535_L538_A0.6050.98
606_R625_D0.6050.98
179_E182_S0.6050.98
536_V541_V0.6040.98
560_E581_E0.6040.98
164_G169_E0.6030.98
305_H368_E0.6020.98
206_I210_R0.5990.98
600_V620_T0.5990.98
407_L463_L0.5980.98
196_S206_I0.5980.98
182_S187_T0.5980.98
484_V488_S0.5970.98
474_Y633_L0.5970.98
305_H372_R0.5970.98
472_L505_C0.5950.97
216_L223_Y0.5950.97
289_L328_L0.5940.97
281_Q338_N0.5940.97
195_T205_E0.5920.97
605_V611_W0.5900.97
197_S200_D0.5900.97
527_S560_E0.5880.97
435_I440_E0.5860.97
336_P345_D0.5860.97
175_I182_S0.5860.97
433_C447_Y0.5850.97
400_R450_M0.5850.97
416_Q468_L0.5840.97
462_R500_D0.5810.97
465_I497_W0.5810.97
225_A233_N0.5800.97
508_S512_R0.5800.97
591_E594_S0.5790.97
278_V306_R0.5790.97
222_S225_A0.5790.97
402_L438_G0.5780.97
204_R209_A0.5780.97
185_L200_D0.5740.97
276_S339_K0.5740.97
609_S612_Q0.5740.97
300_L312_L0.5730.97
587_Q613_T0.5730.97
480_L508_S0.5730.97
452_L485_T0.5730.97
464_Q468_L0.5720.97
203_L206_I0.5710.97
457_S487_E0.5710.97
299_A327_Q0.5710.97
245_L248_D0.5710.97
590_V620_T0.5700.97
590_V614_L0.5690.97
215_R218_T0.5680.97
150_M154_A0.5660.97
176_L182_S0.5650.97
465_I469_I0.5650.97
403_I456_L0.5650.97
289_L293_M0.5640.97
575_N582_N0.5640.97
229_K279_E0.5640.97
275_H306_R0.5640.97
246_L256_G0.5620.96
498_L501_T0.5610.96
250_E354_W0.5610.96
472_L513_I0.5600.96
245_L300_L0.5600.96
228_V231_G0.5590.96
175_I178_G0.5580.96
308_D372_R0.5580.96
266_F375_G0.5580.96
142_G147_I0.5570.96
506_E509_Q0.5560.96
267_N270_S0.5550.96
388_S391_E0.5550.96
416_Q429_R0.5530.96
516_E567_K0.5530.96
186_G195_T0.5530.96
286_T290_S0.5510.96
171_R176_L0.5490.96
230_T282_F0.5480.96
398_R401_T0.5470.96
358_Q362_Q0.5470.96
299_A313_L0.5470.96
273_W277_Q0.5460.96
418_P628_A0.5450.96
466_S497_W0.5440.96
573_V576_I0.5440.96
481_A565_L0.5420.96
137_T140_L0.5420.96
192_P195_T0.5420.96
181_G186_G0.5420.96
318_L384_I0.5420.96
275_H278_V0.5420.96
462_R488_S0.5410.96
354_W357_G0.5400.96
448_M451_V0.5400.96
268_M396_N0.5390.96
184_V203_L0.5380.95
184_V195_T0.5380.95
443_S446_E0.5360.95
181_G194_R0.5350.95
573_V586_V0.5340.95
346_M378_G0.5330.95
432_M483_Q0.5330.95
181_G185_L0.5320.95
266_F270_S0.5310.95
192_P210_R0.5310.95
217_D220_I0.5290.95
323_S327_Q0.5280.95
155_V158_L0.5270.95
324_I328_L0.5270.95
168_L176_L0.5260.95
266_F307_S0.5250.95
402_L435_I0.5240.95
176_L183_N0.5230.95
203_L209_A0.5210.95
261_I349_I0.5210.95
185_L199_L0.5210.95
212_Q216_L0.5200.95
568_L619_V0.5200.95
329_I346_M0.5190.95
518_A603_T0.5180.94
522_V545_V0.5180.94
448_M452_L0.5170.94
350_G370_A0.5160.94
458_E461_D0.5160.94
174_R178_G0.5150.94
237_F302_A0.5150.94
528_R531_P0.5150.94
187_T193_P0.5150.94
229_K270_S0.5140.94
442_V448_M0.5140.94
424_G608_R0.5130.94
557_W560_E0.5130.94
474_Y637_V0.5120.94
182_S200_D0.5100.94
615_I622_G0.5080.94
584_L588_S0.5080.94
527_S531_P0.5080.94
175_I181_G0.5070.94
398_R439_N0.5050.94
256_G363_V0.5040.94
554_S572_L0.5040.94
242_L256_G0.5040.94
200_D205_E0.5040.94
395_G399_W0.5040.94
229_K283_F0.5030.94
582_N610_E0.5030.94
352_C367_A0.5030.94
545_V557_W0.5020.94
483_Q623_Q0.5010.93
158_L161_Q0.5010.93
584_L587_Q0.5000.93
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4rnhA 2 0.6347 100 0.303 Contact Map
4j40A 2 0.3793 100 0.314 Contact Map
3pjxA 1 0.644 100 0.32 Contact Map
3gfzA 2 0.582 100 0.42 Contact Map
4hjfA 1 0.3916 100 0.47 Contact Map
4hu4A 1 0.37 100 0.541 Contact Map
4kieA 1 0.3932 100 0.544 Contact Map
2r6oA 2 0.387 100 0.545 Contact Map
4rniA 2 0.3824 100 0.547 Contact Map
3sy8A 6 0.5898 100 0.566 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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