BIOA - ECOLI - GREMLIN Contacts

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BIOA - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase

UniProt:	P12995	Sequences: MTTDDLAFDQRHIWHPYTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVNMAALQKFFVEQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAVNRAVQDETFFCQ	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG10117
Length:	429 (380)
Sequences:	20764 (12455)
Seq/√Len:	638.9

ECOLI - BIOA PAT GABT ASTC ARGD PUUE GSA
BACSU - BIOK YODT YHXA GABT ARGD GSAB GSA OAT
HALSA - GSA Q9HHV4 Q9HPQ4
SULSO - Q97VB5 Q97VA7 Q97U15 ARGD GSA

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
69_K	73_D	4.356	1.00
232_R	236_D	3.967	1.00
386_Q	419_R	3.942	1.00
36_E	44_R	3.542	1.00
342_Q	411_Q	3.297	1.00
191_M	230_R	3.112	1.00
94_K	325_A	3.101	1.00
31_S	38_I	3.070	1.00
331_D	334_Q	2.857	1.00
256_K	262_H	2.854	1.00
342_Q	407_P	2.807	1.00
63_Q	329_S	2.657	1.00
335_Q	339_I	2.632	1.00
66_A	70_S	2.605	1.00
406_L	409_Q	2.597	1.00
94_K	328_E	2.377	1.00
48_G	413_L	2.376	1.00
322_A	325_A	2.320	1.00
230_R	233_K	2.309	1.00
346_Q	414_T	2.304	1.00
63_Q	326_I	2.246	1.00
36_E	409_Q	2.218	1.00
30_V	40_S	2.213	1.00
382_F	385_E	2.183	1.00
233_K	237_R	2.183	1.00
353_A	418_N	2.177	1.00
386_Q	423_D	2.174	1.00
61_H	326_I	2.169	1.00
63_Q	322_A	2.163	1.00
338_D	407_P	2.141	1.00
382_F	423_D	2.126	1.00
38_I	44_R	2.103	1.00
346_Q	411_Q	2.018	1.00
94_K	321_N	1.997	1.00
195_A	237_R	1.968	1.00
136_R	204_E	1.962	1.00
91_L	320_A	1.943	1.00
65_N	69_K	1.866	1.00
388_V	416_A	1.859	1.00
344_R	348_A	1.857	1.00
412_R	416_A	1.850	1.00
341_V	345_E	1.844	1.00
209_I	243_I	1.827	1.00
382_F	386_Q	1.824	1.00
39_L	43_R	1.805	1.00
104_E	290_R	1.802	1.00
105_C	290_R	1.801	1.00
326_I	330_G	1.798	1.00
290_R	294_E	1.796	1.00
43_R	387_G	1.795	1.00
86_A	90_E	1.752	1.00
30_V	74_A	1.738	1.00
109_A	284_S	1.737	1.00
176_P	193_G	1.732	1.00
357_A	371_T	1.704	1.00
346_Q	349_P	1.701	1.00
195_A	199_A	1.691	1.00
36_E	412_R	1.690	1.00
93_R	97_A	1.690	1.00
344_R	361_V	1.686	1.00
194_F	231_I	1.676	1.00
68_M	319_A	1.655	1.00
353_A	422_Q	1.647	1.00
208_V	235_C	1.636	1.00
136_R	173_L	1.618	1.00
68_M	72_I	1.614	1.00
210_I	231_I	1.613	1.00
33_E	62_P	1.604	1.00
116_V	271_C	1.602	1.00
98_M	328_E	1.592	1.00
256_K	337_A	1.581	1.00
281_M	316_A	1.566	1.00
348_A	351_R	1.555	1.00
192_V	196_R	1.548	1.00
198_M	240_I	1.521	1.00
272_L	285_A	1.520	1.00
339_I	342_Q	1.514	1.00
35_C	409_Q	1.505	1.00
277_T	283_L	1.502	1.00
70_S	74_A	1.498	1.00
94_K	97_A	1.488	1.00
44_R	412_R	1.484	1.00
344_R	366_G	1.483	1.00
339_I	410_L	1.479	1.00
126_Y	292_V	1.475	1.00
90_E	321_N	1.464	1.00
244_A	260_C	1.446	1.00
226_E	229_K	1.439	1.00
382_F	420_A	1.435	1.00
141_R	176_P	1.430	1.00
140_F	227_W	1.424	1.00
35_C	404_I	1.423	1.00
189_R	224_H	1.419	1.00
118_V	286_T	1.409	1.00
99_T	287_L	1.409	1.00
346_Q	415_A	1.405	1.00
383_F	390_I	1.402	1.00
272_L	287_L	1.402	1.00
138_L	205_I	1.394	1.00
137_F	207_A	1.387	1.00
106_V	287_L	1.386	1.00
335_Q	338_D	1.384	1.00
92_C	108_L	1.382	1.00
232_R	242_L	1.370	1.00
232_R	235_C	1.366	1.00
386_Q	420_A	1.363	1.00
62_P	66_A	1.357	1.00
192_V	195_A	1.348	1.00
321_N	325_A	1.336	1.00
346_Q	418_N	1.333	1.00
418_N	422_Q	1.331	1.00
322_A	326_I	1.330	1.00
120_M	137_F	1.325	1.00
39_L	45_L	1.324	1.00
342_Q	346_Q	1.321	1.00
195_A	230_R	1.320	1.00
256_K	261_E	1.313	1.00
257_L	261_E	1.311	1.00
96_V	106_V	1.311	1.00
119_A	271_C	1.307	1.00
283_L	317_C	1.304	1.00
126_Y	295_T	1.297	1.00
334_Q	338_D	1.297	1.00
405_I	410_L	1.294	1.00
339_I	407_P	1.291	1.00
139_T	174_F	1.287	1.00
61_H	330_G	1.276	1.00
29_V	37_L	1.272	1.00
33_E	60_N	1.270	1.00
66_A	69_K	1.260	1.00
210_I	228_L	1.260	1.00
97_A	328_E	1.260	1.00
90_E	325_A	1.259	1.00
116_V	209_I	1.254	1.00
136_R	202_R	1.251	1.00
260_C	270_L	1.250	1.00
123_A	243_I	1.249	1.00
31_S	74_A	1.241	1.00
262_H	362_L	1.231	1.00
276_L	283_L	1.229	1.00
269_I	288_T	1.225	1.00
208_V	231_I	1.213	1.00
57_H	326_I	1.211	1.00
263_A	362_L	1.210	1.00
226_E	263_A	1.210	1.00
283_L	320_A	1.208	1.00
266_A	289_T	1.207	1.00
186_W	190_D	1.200	1.00
409_Q	412_R	1.185	1.00
65_N	73_D	1.181	1.00
229_K	233_K	1.181	1.00
68_M	315_L	1.179	1.00
67_A	322_A	1.177	1.00
154_V	172_N	1.176	1.00
109_A	286_T	1.170	1.00
276_L	285_A	1.166	1.00
65_N	72_I	1.166	1.00
195_A	234_I	1.166	1.00
105_C	294_E	1.160	1.00
60_N	65_N	1.158	1.00
325_A	329_S	1.154	1.00
69_K	72_I	1.152	1.00
244_A	265_I	1.147	1.00
190_D	193_G	1.134	1.00
175_A	197_L	1.133	1.00
415_A	419_R	1.129	1.00
337_A	341_V	1.129	1.00
241_L	292_V	1.119	1.00
102_P	266_A	1.113	1.00
383_F	416_A	1.112	1.00
229_K	264_E	1.104	1.00
108_L	317_C	1.104	1.00
154_V	209_I	1.091	1.00
252_G	333_Q	1.081	1.00
269_I	286_T	1.081	1.00
258_F	272_L	1.078	1.00
383_F	420_A	1.077	1.00
388_V	413_L	1.073	1.00
191_M	234_I	1.071	1.00
326_I	329_S	1.069	1.00
345_E	349_P	1.065	1.00
412_R	415_A	1.064	1.00
36_E	46_V	1.060	1.00
193_G	196_R	1.059	1.00
30_V	86_A	1.054	1.00
35_C	46_V	1.053	1.00
407_P	411_Q	1.053	1.00
33_E	44_R	1.049	1.00
134_R	239_G	1.047	1.00
113_S	151_A	1.041	1.00
386_Q	416_A	1.041	1.00
383_F	388_V	1.034	1.00
235_C	240_I	1.021	1.00
411_Q	415_A	1.019	1.00
28_P	40_S	1.017	1.00
199_A	238_E	1.012	1.00
122_M	286_T	1.012	1.00
91_L	321_N	1.002	1.00
120_M	154_V	0.990	1.00
278_G	323_S	0.988	1.00
30_V	42_G	0.987	1.00
33_E	38_I	0.984	1.00
115_A	271_C	0.979	1.00
233_K	236_D	0.976	1.00
98_M	257_L	0.975	1.00
333_Q	336_V	0.971	1.00
30_V	38_I	0.968	1.00
195_A	233_K	0.965	1.00
195_A	238_E	0.961	1.00
213_I	362_L	0.961	1.00
196_R	200_A	0.960	1.00
103_L	287_L	0.956	1.00
255_G	261_E	0.956	1.00
139_T	209_I	0.956	1.00
187_D	193_G	0.949	1.00
212_P	244_A	0.944	1.00
57_H	323_S	0.942	1.00
381_K	385_E	0.939	1.00
56_I	275_A	0.939	1.00
335_Q	407_P	0.936	1.00
94_K	98_M	0.936	1.00
408_Q	411_Q	0.933	1.00
225_P	229_K	0.932	1.00
135_Q	204_E	0.931	1.00
334_Q	337_A	0.926	1.00
198_M	205_I	0.926	1.00
357_A	369_E	0.924	1.00
207_A	243_I	0.920	1.00
63_Q	325_A	0.919	1.00
64_L	319_A	0.918	1.00
318_A	322_A	0.916	1.00
378_A	382_F	0.915	1.00
350_A	414_T	0.914	1.00
28_P	89_I	0.912	1.00
350_A	418_N	0.912	1.00
251_F	327_L	0.911	1.00
46_V	409_Q	0.910	1.00
327_L	332_W	0.909	1.00
231_I	242_L	0.908	1.00
140_F	223_Y	0.902	1.00
228_L	263_A	0.901	1.00
66_A	73_D	0.901	1.00
367_V	396_L	0.898	1.00
63_Q	66_A	0.897	1.00
327_L	333_Q	0.896	1.00
222_M	362_L	0.895	1.00
369_E	395_K	0.889	1.00
119_A	243_I	0.880	1.00
140_F	177_A	0.879	1.00
153_S	169_L	0.879	1.00
70_S	318_A	0.875	1.00
340_E	344_R	0.870	1.00
70_S	73_D	0.870	1.00
57_H	64_L	0.870	1.00
55_A	278_G	0.869	1.00
113_S	148_T	0.868	1.00
349_P	352_D	0.867	1.00
122_M	288_T	0.867	1.00
46_V	412_R	0.866	1.00
188_E	192_V	0.862	1.00
126_Y	241_L	0.862	1.00
35_C	406_L	0.860	1.00
202_R	238_E	0.859	1.00
226_E	230_R	0.853	1.00
40_S	86_A	0.853	1.00
234_I	238_E	0.849	1.00
48_G	405_I	0.848	1.00
262_H	337_A	0.845	1.00
98_M	324_L	0.838	1.00
136_R	205_I	0.835	1.00
100_P	260_C	0.835	1.00
345_E	348_A	0.830	1.00
332_W	336_V	0.828	1.00
346_Q	410_L	0.828	1.00
405_I	413_L	0.824	1.00
123_A	207_A	0.824	1.00
188_E	230_R	0.824	1.00
358_D	369_E	0.820	1.00
236_D	266_A	0.813	1.00
257_L	333_Q	0.809	1.00
63_Q	67_A	0.806	1.00
364_A	405_I	0.805	1.00
251_F	324_L	0.800	1.00
281_M	315_L	0.799	1.00
95_L	287_L	0.797	1.00
90_E	94_K	0.795	1.00
123_A	241_L	0.792	1.00
249_T	365_I	0.791	1.00
187_D	191_M	0.788	1.00
177_A	223_Y	0.787	1.00
87_P	318_A	0.787	1.00
96_V	103_L	0.785	1.00
342_Q	345_E	0.780	1.00
187_D	190_D	0.777	1.00
48_G	388_V	0.771	1.00
239_G	291_E	0.771	1.00
333_Q	337_A	0.770	1.00
109_A	115_A	0.768	1.00
46_V	413_L	0.768	1.00
232_R	265_I	0.767	1.00
348_A	352_D	0.765	1.00
349_P	418_N	0.758	1.00
230_R	234_I	0.758	1.00
102_P	270_L	0.757	1.00
338_D	342_Q	0.756	1.00
135_Q	171_E	0.755	1.00
260_C	265_I	0.755	1.00
419_R	423_D	0.754	1.00
110_D	114_V	0.752	1.00
351_R	356_V	0.752	1.00
176_P	190_D	0.751	1.00
208_V	240_I	0.750	1.00
360_R	369_E	0.750	1.00
251_F	272_L	0.750	1.00
53_W	400_M	0.749	1.00
34_G	404_I	0.747	1.00
133_A	204_E	0.747	1.00
87_P	321_N	0.747	1.00
173_L	197_L	0.747	1.00
106_V	285_A	0.746	1.00
212_P	228_L	0.745	1.00
258_F	270_L	0.742	1.00
235_C	242_L	0.742	1.00
370_T	379_L	0.738	1.00
291_E	294_E	0.735	1.00
35_C	402_P	0.735	1.00
380_Q	392_P	0.735	1.00
379_L	417_V	0.731	1.00
308_P	311_M	0.731	1.00
193_G	197_L	0.727	1.00
91_L	317_C	0.726	1.00
377_A	381_K	0.724	1.00
67_A	319_A	0.724	1.00
359_V	366_G	0.723	1.00
399_L	417_V	0.723	1.00
251_F	276_L	0.721	1.00
257_L	328_E	0.718	1.00
222_M	361_V	0.718	1.00
123_A	269_I	0.716	1.00
29_V	32_A	0.716	1.00
84_T	89_I	0.714	1.00
198_M	234_I	0.713	1.00
251_F	257_L	0.712	1.00
120_M	209_I	0.710	1.00
210_I	242_L	0.709	1.00
205_I	240_I	0.708	1.00
361_V	366_G	0.707	1.00
87_P	90_E	0.707	1.00
254_T	262_H	0.706	1.00
85_H	88_A	0.704	1.00
64_L	278_G	0.702	1.00
223_Y	226_E	0.702	1.00
103_L	270_L	0.700	1.00
49_M	391_R	0.699	1.00
111_S	114_V	0.697	1.00
87_P	317_C	0.696	1.00
229_K	263_A	0.693	1.00
88_A	92_C	0.693	1.00
338_D	341_V	0.693	1.00
122_M	296_I	0.691	1.00
74_A	86_A	0.689	1.00
365_I	400_M	0.686	1.00
116_V	151_A	0.686	1.00
46_V	388_V	0.685	1.00
336_V	340_E	0.685	1.00
71_Q	74_A	0.684	1.00
150_G	169_L	0.683	1.00
339_I	364_A	0.683	1.00
50_S	400_M	0.683	1.00
75_M	78_V	0.683	1.00
272_L	276_L	0.681	1.00
37_L	389_W	0.681	1.00
369_E	396_L	0.680	1.00
379_L	420_A	0.680	1.00
43_R	385_E	0.679	1.00
236_D	242_L	0.678	1.00
340_E	361_V	0.674	1.00
353_A	421_V	0.673	1.00
213_I	254_T	0.673	1.00
289_T	292_V	0.671	1.00
100_P	103_L	0.669	1.00
413_L	416_A	0.668	1.00
119_A	269_I	0.667	1.00
87_P	91_L	0.666	1.00
121_K	306_H	0.666	1.00
72_I	315_L	0.665	1.00
379_L	383_F	0.665	1.00
201_H	204_E	0.664	1.00
383_F	417_V	0.664	1.00
370_T	421_V	0.663	1.00
292_V	295_T	0.661	1.00
76_S	281_M	0.660	1.00
408_Q	412_R	0.660	1.00
371_T	374_V	0.660	1.00
126_Y	291_E	0.657	1.00
335_Q	406_L	0.657	1.00
186_W	189_R	0.657	1.00
94_K	324_L	0.656	1.00
252_G	327_L	0.656	1.00
99_T	270_L	0.652	1.00
414_T	418_N	0.650	1.00
228_L	244_A	0.649	1.00
89_I	93_R	0.646	1.00
359_V	368_V	0.644	1.00
98_M	258_F	0.643	1.00
399_L	413_L	0.642	1.00
242_L	265_I	0.640	1.00
175_A	194_F	0.639	1.00
379_L	397_I	0.638	1.00
243_I	269_I	0.636	1.00
260_C	267_P	0.633	1.00
288_T	293_A	0.633	1.00
342_Q	410_L	0.632	1.00
91_L	283_L	0.631	1.00
420_A	423_D	0.631	1.00
194_F	208_V	0.629	1.00
112_G	247_I	0.628	1.00
380_Q	384_V	0.628	1.00
225_P	263_A	0.627	1.00
32_A	75_M	0.626	1.00
28_P	84_T	0.626	1.00
71_Q	87_P	0.624	1.00
225_P	362_L	0.623	1.00
100_P	261_E	0.622	1.00
122_M	269_I	0.622	1.00
339_I	405_I	0.622	1.00
216_G	365_I	0.621	1.00
378_A	381_K	0.621	1.00
343_L	414_T	0.620	1.00
175_A	193_G	0.618	1.00
247_I	271_C	0.618	1.00
35_C	405_I	0.617	1.00
388_V	412_R	0.615	1.00
60_N	72_I	0.614	1.00
273_G	284_S	0.613	1.00
215_Q	218_G	0.612	1.00
351_R	358_D	0.612	1.00
368_V	417_V	0.611	1.00
99_T	258_F	0.611	1.00
196_R	199_A	0.611	1.00
109_A	114_V	0.610	1.00
57_H	332_W	0.610	1.00
355_M	371_T	0.609	1.00
44_R	416_A	0.606	1.00
118_V	306_H	0.605	1.00
191_M	195_A	0.602	1.00
381_K	384_V	0.602	1.00
50_S	402_P	0.601	1.00
341_V	344_R	0.601	1.00
336_V	403_Y	0.601	1.00
67_A	70_S	0.599	1.00
134_R	240_I	0.599	1.00
216_G	248_A	0.597	1.00
236_D	291_E	0.596	1.00
91_L	108_L	0.592	1.00
405_I	409_Q	0.592	1.00
144_Y	147_D	0.591	1.00
49_M	389_W	0.591	1.00
74_A	87_P	0.590	1.00
98_M	256_K	0.590	1.00
192_V	230_R	0.589	1.00
124_L	149_F	0.589	1.00
251_F	258_F	0.588	1.00
32_A	37_L	0.586	1.00
141_R	174_F	0.585	1.00
234_I	237_R	0.585	1.00
198_M	238_E	0.584	1.00
319_A	322_A	0.584	1.00
343_L	366_G	0.584	1.00
138_L	194_F	0.583	1.00
72_I	319_A	0.583	1.00
416_A	420_A	0.583	1.00
102_P	260_C	0.581	1.00
397_I	417_V	0.581	1.00
56_I	403_Y	0.580	1.00
215_Q	221_R	0.580	1.00
356_V	421_V	0.579	1.00
339_I	406_L	0.579	1.00
138_L	175_A	0.579	1.00
336_V	364_A	0.575	1.00
343_L	410_L	0.575	1.00
350_A	353_A	0.574	1.00
417_V	421_V	0.573	1.00
139_T	172_N	0.572	1.00
186_W	197_L	0.572	1.00
138_L	197_L	0.572	1.00
335_Q	410_L	0.572	1.00
132_E	206_A	0.570	1.00
56_I	327_L	0.569	1.00
30_V	33_E	0.568	1.00
64_L	323_S	0.567	1.00
67_A	325_A	0.567	1.00
140_F	175_A	0.567	1.00
212_P	249_T	0.566	1.00
416_A	419_R	0.565	1.00
99_T	272_L	0.563	1.00
136_R	201_H	0.560	1.00
134_R	204_E	0.560	1.00
328_E	331_D	0.558	1.00
194_F	234_I	0.556	1.00
72_I	76_S	0.555	1.00
28_P	86_A	0.554	1.00
269_I	292_V	0.553	1.00
156_D	174_F	0.551	1.00
27_Y	30_V	0.551	1.00
360_R	367_V	0.550	1.00
372_H	375_N	0.550	1.00
33_E	36_E	0.548	1.00
96_V	287_L	0.548	1.00
194_F	230_R	0.547	1.00
124_L	167_G	0.546	1.00
342_Q	414_T	0.544	1.00
248_A	365_I	0.544	1.00
62_P	73_D	0.543	1.00
140_F	210_I	0.541	1.00
360_R	396_L	0.541	1.00
102_P	289_T	0.540	1.00
257_L	324_L	0.540	1.00
96_V	104_E	0.538	0.99
140_F	231_I	0.537	0.99
29_V	83_I	0.537	0.99
337_A	340_E	0.536	0.99
71_Q	75_M	0.536	0.99
29_V	75_M	0.535	0.99
231_I	240_I	0.535	0.99
31_S	44_R	0.534	0.99
136_R	171_E	0.533	0.99
46_V	405_I	0.533	0.99
68_M	76_S	0.532	0.99
189_R	193_G	0.532	0.99
257_L	327_L	0.531	0.99
96_V	99_T	0.529	0.99
64_L	322_A	0.529	0.99
194_F	227_W	0.529	0.99
158_D	163_S	0.526	0.99
197_L	200_A	0.526	0.99
70_S	322_A	0.525	0.99
313_N	316_A	0.525	0.99
391_R	394_G	0.525	0.99
270_L	287_L	0.524	0.99
330_G	335_Q	0.523	0.99
90_E	93_R	0.523	0.99
229_K	232_R	0.522	0.99
83_I	389_W	0.522	0.99
411_Q	414_T	0.522	0.99
388_V	420_A	0.521	0.99
120_M	150_G	0.521	0.99
162_H	174_F	0.521	0.99
413_L	417_V	0.519	0.99
218_G	221_R	0.519	0.99
324_L	328_E	0.517	0.99
99_T	106_V	0.515	0.99
368_V	399_L	0.515	0.99
385_E	423_D	0.512	0.99
356_V	368_V	0.512	0.99
212_P	260_C	0.512	0.99
199_A	237_R	0.512	0.99
100_P	104_E	0.511	0.99
273_G	310_F	0.508	0.99
210_I	244_A	0.507	0.99
387_G	416_A	0.506	0.99
32_A	55_A	0.506	0.99
410_L	414_T	0.506	0.99
402_P	405_I	0.503	0.99
410_L	413_L	0.502	0.99
63_Q	330_G	0.502	0.99
267_P	270_L	0.502	0.99
191_M	194_F	0.501	0.99
412_R	419_R	0.501	0.99
65_N	278_G	0.500	0.99

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4e3qA	3	0.9907	100	0.359	Contact Map
4a0gA	2	0.9837	100	0.362	Contact Map
3hmuA	2	0.986	100	0.372	Contact Map
4uoxA	3	0.9557	100	0.374	Contact Map
4atqA	7	0.9534	100	0.374	Contact Map
3oksA	2	0.9487	100	0.38	Contact Map
3i5tA	2	0.986	100	0.381	Contact Map
1s0aA	2	0.9953	100	0.381	Contact Map
1z7dA	2	0.8695	100	0.387	Contact Map
4ffcA	4	0.951	100	0.39	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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