MURF - ECOLI - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

MURF - UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase

UniProt:	P11880	Sequences: MISVTLSQLTDILNGELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNANVGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTASGVGEHFADKTALITRLKLLIAEQQVITILVKGSRSAAMEEVVRALQENGTC	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG10622
Length:	452 (380)
Sequences:	18166 (13237)
Seq/√Len:	679.0

ECOLI - MURF MURE MURC MPL MURD
BACSU - MURF MURE MURD MURC

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
180_L	292_L	3.571	1.00
239_F	288_A	2.927	1.00
252_N	263_T	2.708	1.00
80_V	83_T	2.616	1.00
124_Q	309_N	2.527	1.00
299_T	302_A	2.522	1.00
101_R	177_E	2.505	1.00
407_F	416_R	2.489	1.00
290_A	303_I	2.486	1.00
180_L	288_A	2.453	1.00
178_A	292_L	2.437	1.00
416_R	420_L	2.420	1.00
194_S	197_G	2.390	1.00
409_D	412_A	2.375	1.00
251_T	265_Q	2.374	1.00
319_P	327_L	2.328	1.00
274_L	308_A	2.291	1.00
386_R	420_L	2.230	1.00
219_A	246_S	2.218	1.00
121_I	289_A	2.215	1.00
263_T	272_D	2.193	1.00
56_Q	60_G	2.190	1.00
248_F	291_A	2.181	1.00
356_L	384_I	2.177	1.00
121_I	293_S	2.168	1.00
199_A	226_N	2.145	1.00
214_I	295_S	2.139	1.00
124_Q	306_G	2.137	1.00
80_V	84_R	2.133	1.00
275_L	286_A	2.123	1.00
58_K	75_L	2.107	1.00
341_T	345_Q	1.991	1.00
193_G	197_G	1.942	1.00
124_Q	305_A	1.942	1.00
41_V	66_L	1.935	1.00
261_E	272_D	1.918	1.00
206_F	215_A	1.906	1.00
421_I	429_I	1.905	1.00
125_C	302_A	1.885	1.00
177_E	213_G	1.864	1.00
104_A	176_P	1.855	1.00
127_N	153_D	1.850	1.00
416_R	419_L	1.847	1.00
120_A	309_N	1.825	1.00
353_Y	427_I	1.820	1.00
388_L	420_L	1.816	1.00
203_G	230_V	1.814	1.00
56_Q	59_A	1.806	1.00
104_A	159_L	1.775	1.00
118_T	289_A	1.775	1.00
263_T	270_S	1.769	1.00
262_F	286_A	1.761	1.00
185_A	338_G	1.743	1.00
103_V	296_V	1.723	1.00
118_T	292_L	1.679	1.00
388_L	416_R	1.672	1.00
286_A	307_L	1.656	1.00
197_G	200_K	1.652	1.00
119_A	123_S	1.640	1.00
265_Q	270_S	1.633	1.00
119_A	131_T	1.632	1.00
250_A	287_L	1.630	1.00
118_T	293_S	1.626	1.00
241_P	280_R	1.626	1.00
201_A	204_E	1.625	1.00
319_P	329_L	1.623	1.00
249_T	265_Q	1.622	1.00
378_A	382_A	1.619	1.00
199_A	223_D	1.613	1.00
55_D	59_A	1.608	1.00
261_E	274_L	1.604	1.00
250_A	253_I	1.602	1.00
367_E	396_A	1.591	1.00
280_R	345_Q	1.585	1.00
294_M	300_L	1.581	1.00
161_A	192_F	1.580	1.00
407_F	412_A	1.544	1.00
109_S	336_N	1.543	1.00
178_A	296_V	1.542	1.00
266_T	294_M	1.540	1.00
179_A	205_I	1.540	1.00
102_V	174_T	1.532	1.00
105_L	118_T	1.527	1.00
113_S	282_N	1.523	1.00
125_C	298_A	1.521	1.00
219_A	238_R	1.510	1.00
101_R	154_Y	1.507	1.00
293_S	303_I	1.473	1.00
304_K	308_A	1.471	1.00
44_K	68_S	1.446	1.00
354_R	359_G	1.439	1.00
48_F	52_D	1.439	1.00
214_I	237_W	1.434	1.00
322_L	327_L	1.431	1.00
120_A	306_G	1.428	1.00
342_A	345_Q	1.425	1.00
355_V	420_L	1.414	1.00
248_F	294_M	1.413	1.00
103_V	118_T	1.413	1.00
105_L	115_K	1.412	1.00
154_Y	296_V	1.411	1.00
368_S	393_Q	1.406	1.00
262_F	283_I	1.405	1.00
216_I	295_S	1.395	1.00
217_M	236_V	1.390	1.00
266_T	269_G	1.388	1.00
357_V	390_V	1.380	1.00
276_P	311_K	1.375	1.00
328_L	418_K	1.361	1.00
326_Q	421_I	1.359	1.00
280_R	349_E	1.356	1.00
254_H	261_E	1.355	1.00
214_I	235_K	1.350	1.00
367_E	370_A	1.349	1.00
122_L	156_V	1.329	1.00
390_V	413_L	1.325	1.00
345_Q	378_A	1.321	1.00
114_V	182_N	1.320	1.00
345_Q	383_G	1.316	1.00
122_L	296_V	1.315	1.00
112_T	313_V	1.304	1.00
251_T	263_T	1.300	1.00
305_A	309_N	1.298	1.00
217_M	238_R	1.287	1.00
302_A	305_A	1.284	1.00
117_M	310_L	1.284	1.00
355_V	386_R	1.276	1.00
271_V	304_K	1.273	1.00
117_M	277_L	1.273	1.00
293_S	298_A	1.271	1.00
264_L	290_A	1.271	1.00
184_L	199_A	1.268	1.00
178_A	295_S	1.264	1.00
108_S	187_A	1.262	1.00
217_M	224_W	1.252	1.00
412_A	415_T	1.248	1.00
95_R	98_V	1.245	1.00
203_G	227_W	1.233	1.00
389_S	398_S	1.232	1.00
68_S	83_T	1.230	1.00
200_K	230_V	1.224	1.00
101_R	153_D	1.219	1.00
175_R	213_G	1.216	1.00
218_N	284_A	1.215	1.00
235_K	295_S	1.213	1.00
178_A	216_I	1.209	1.00
186_A	189_L	1.208	1.00
85_L	89_E	1.208	1.00
388_L	413_L	1.204	1.00
196_A	200_K	1.201	1.00
122_L	154_Y	1.185	1.00
181_V	184_L	1.174	1.00
128_T	153_D	1.171	1.00
317_L	347_L	1.169	1.00
395_H	399_T	1.161	1.00
305_A	308_A	1.161	1.00
186_A	371_C	1.159	1.00
54_A	65_L	1.150	1.00
319_P	322_L	1.144	1.00
282_N	285_N	1.137	1.00
238_R	247_D	1.137	1.00
259_G	274_L	1.133	1.00
340_M	432_K	1.131	1.00
317_L	329_L	1.131	1.00
314_P	318_F	1.129	1.00
389_S	406_H	1.125	1.00
415_T	419_L	1.123	1.00
251_T	270_S	1.121	1.00
79_I	82_D	1.120	1.00
248_F	266_T	1.117	1.00
353_Y	422_A	1.112	1.00
373_V	377_E	1.112	1.00
237_W	291_A	1.104	1.00
394_S	397_I	1.102	1.00
341_T	378_A	1.100	1.00
355_V	388_L	1.096	1.00
177_E	210_P	1.095	1.00
118_T	180_L	1.085	1.00
159_L	171_V	1.083	1.00
204_E	207_S	1.077	1.00
369_E	373_V	1.075	1.00
142_P	145_L	1.074	1.00
262_F	273_V	1.072	1.00
280_R	284_A	1.068	1.00
301_D	305_A	1.066	1.00
217_M	228_Q	1.064	1.00
237_W	295_S	1.064	1.00
223_D	226_N	1.061	1.00
103_V	292_L	1.058	1.00
242_N	280_R	1.056	1.00
169_W	201_A	1.055	1.00
186_A	195_L	1.055	1.00
70_P	79_I	1.052	1.00
99_P	148_L	1.051	1.00
226_N	229_S	1.044	1.00
371_C	374_Q	1.043	1.00
391_G	408_A	1.039	1.00
109_S	338_G	1.035	1.00
106_T	202_K	1.033	1.00
318_F	330_D	1.031	1.00
325_N	423_E	1.029	1.00
216_I	291_A	1.028	1.00
200_K	204_E	1.028	1.00
219_A	225_L	1.028	1.00
89_E	93_W	1.023	1.00
343_A	430_L	1.019	1.00
354_R	360_D	1.017	1.00
196_A	223_D	1.009	1.00
335_A	340_M	1.007	1.00
89_E	92_A	1.005	1.00
169_W	172_S	1.001	1.00
117_M	286_A	1.000	1.00
142_P	146_L	0.998	1.00
411_T	415_T	0.995	1.00
182_N	288_A	0.995	1.00
181_V	206_F	0.994	1.00
298_A	302_A	0.991	1.00
220_D	284_A	0.984	1.00
195_L	223_D	0.984	1.00
256_T	261_E	0.982	1.00
388_L	407_F	0.979	1.00
240_S	284_A	0.978	1.00
90_L	94_V	0.968	1.00
322_L	326_Q	0.966	1.00
125_C	306_G	0.965	1.00
241_P	284_A	0.964	1.00
356_L	359_G	0.964	1.00
353_Y	385_D	0.963	1.00
122_L	298_A	0.963	1.00
187_A	336_N	0.963	1.00
90_L	93_W	0.962	1.00
58_K	65_L	0.960	1.00
178_A	214_I	0.959	1.00
44_K	69_R	0.956	1.00
347_L	354_R	0.944	1.00
207_S	230_V	0.941	1.00
241_P	250_A	0.935	1.00
356_L	360_D	0.935	1.00
353_Y	386_R	0.934	1.00
121_I	303_I	0.931	1.00
199_A	203_G	0.930	1.00
124_Q	302_A	0.930	1.00
355_V	427_I	0.929	1.00
48_F	53_F	0.927	1.00
412_A	416_R	0.917	1.00
127_N	154_Y	0.916	1.00
121_I	306_G	0.914	1.00
120_A	123_S	0.914	1.00
256_T	259_G	0.914	1.00
120_A	310_L	0.912	1.00
45_G	50_A	0.912	1.00
374_Q	377_E	0.911	1.00
341_T	382_A	0.910	1.00
292_L	296_V	0.909	1.00
250_A	283_I	0.901	1.00
408_A	412_A	0.896	1.00
372_H	376_G	0.895	1.00
340_M	358_V	0.895	1.00
102_V	155_A	0.894	1.00
225_L	229_S	0.888	1.00
181_V	227_W	0.886	1.00
395_H	406_H	0.883	1.00
366_A	392_K	0.882	1.00
294_M	303_I	0.882	1.00
141_V	145_L	0.878	1.00
329_L	347_L	0.875	1.00
367_E	372_H	0.874	1.00
162_N	191_G	0.873	1.00
218_N	221_N	0.867	1.00
238_R	246_S	0.864	1.00
326_Q	424_Q	0.861	1.00
338_G	342_A	0.861	1.00
41_V	83_T	0.860	1.00
78_L	82_D	0.859	1.00
101_R	296_V	0.858	1.00
242_N	245_N	0.857	1.00
315_G	330_D	0.855	1.00
388_L	417_L	0.852	1.00
424_Q	427_I	0.851	1.00
125_C	299_T	0.849	1.00
141_V	147_R	0.847	1.00
42_A	67_V	0.845	1.00
92_A	95_R	0.843	1.00
197_G	201_A	0.840	1.00
91_A	94_V	0.840	1.00
422_A	427_I	0.840	1.00
119_A	130_Y	0.839	1.00
271_V	300_L	0.838	1.00
221_N	284_A	0.836	1.00
220_D	240_S	0.835	1.00
204_E	208_G	0.831	1.00
273_V	304_K	0.827	1.00
222_N	226_N	0.825	1.00
348_A	383_G	0.824	1.00
49_D	69_R	0.818	1.00
203_G	207_S	0.816	1.00
417_L	421_I	0.814	1.00
401_S	405_E	0.810	1.00
143_M	146_L	0.807	1.00
104_A	205_I	0.804	1.00
57_A	62_A	0.803	1.00
290_A	294_M	0.802	1.00
67_V	77_Q	0.799	1.00
281_H	342_A	0.799	1.00
407_F	413_L	0.798	1.00
120_A	124_Q	0.798	1.00
175_R	210_P	0.796	1.00
327_L	428_T	0.794	1.00
40_F	63_G	0.792	1.00
169_W	191_G	0.791	1.00
114_V	289_A	0.791	1.00
65_L	75_L	0.790	1.00
85_L	169_W	0.788	1.00
228_Q	238_R	0.787	1.00
398_S	406_H	0.787	1.00
91_A	173_L	0.786	1.00
303_I	306_G	0.785	1.00
65_L	68_S	0.784	1.00
119_A	129_L	0.784	1.00
127_N	151_E	0.779	1.00
143_M	147_R	0.779	1.00
254_H	272_D	0.778	1.00
79_I	83_T	0.777	1.00
317_L	346_V	0.776	1.00
225_L	238_R	0.771	1.00
413_L	417_L	0.771	1.00
42_A	54_A	0.770	1.00
88_G	173_L	0.769	1.00
396_A	399_T	0.761	1.00
373_V	400_A	0.759	1.00
260_T	283_I	0.759	1.00
88_G	169_W	0.758	1.00
161_A	201_A	0.757	1.00
216_I	292_L	0.756	1.00
114_V	288_A	0.755	1.00
368_S	371_C	0.754	1.00
354_R	358_V	0.753	1.00
41_V	87_F	0.753	1.00
164_Q	200_K	0.753	1.00
88_G	92_A	0.752	1.00
185_A	195_L	0.750	1.00
300_L	304_K	0.750	1.00
358_V	389_S	0.749	1.00
182_N	239_F	0.745	1.00
215_A	231_I	0.741	1.00
343_A	432_K	0.741	1.00
51_H	54_A	0.741	1.00
393_Q	396_A	0.740	1.00
269_G	300_L	0.737	1.00
334_N	432_K	0.736	1.00
371_C	375_V	0.730	1.00
322_L	325_N	0.728	1.00
116_E	135_L	0.728	1.00
125_C	293_S	0.727	1.00
51_H	68_S	0.725	1.00
195_L	199_A	0.725	1.00
116_E	313_V	0.725	1.00
341_T	374_Q	0.725	1.00
218_N	239_F	0.724	1.00
196_A	199_A	0.723	1.00
102_V	157_I	0.723	1.00
247_D	267_P	0.720	1.00
50_A	53_F	0.719	1.00
159_L	176_P	0.718	1.00
119_A	156_V	0.714	1.00
171_V	174_T	0.714	1.00
195_L	198_V	0.714	1.00
109_S	339_S	0.710	1.00
290_A	300_L	0.708	1.00
264_L	287_L	0.707	1.00
115_K	131_T	0.707	1.00
142_P	147_R	0.706	1.00
148_L	155_A	0.704	1.00
54_A	58_K	0.703	1.00
253_I	283_I	0.703	1.00
192_F	201_A	0.703	1.00
87_F	92_A	0.701	1.00
277_L	310_L	0.700	1.00
196_A	226_N	0.700	1.00
367_E	371_C	0.699	1.00
149_T	152_Y	0.699	1.00
49_D	52_D	0.695	1.00
359_G	433_G	0.695	1.00
360_D	393_Q	0.692	1.00
49_D	53_F	0.691	1.00
255_V	260_T	0.690	1.00
186_A	338_G	0.689	1.00
219_A	224_W	0.684	1.00
360_D	437_A	0.679	1.00
376_G	380_K	0.679	1.00
164_Q	201_A	0.678	1.00
199_A	227_W	0.678	1.00
366_A	369_E	0.677	1.00
115_K	156_V	0.676	1.00
368_S	372_H	0.673	1.00
301_D	304_K	0.673	1.00
246_S	249_T	0.671	1.00
390_V	410_K	0.665	1.00
324_E	423_E	0.664	1.00
148_L	152_Y	0.664	1.00
414_I	418_K	0.664	1.00
298_A	303_I	0.664	1.00
344_V	382_A	0.664	1.00
43_L	84_R	0.662	1.00
88_G	91_A	0.662	1.00
164_Q	197_G	0.661	1.00
367_E	376_G	0.661	1.00
370_A	374_Q	0.659	1.00
100_A	148_L	0.658	1.00
397_I	400_A	0.658	1.00
273_V	286_A	0.656	1.00
369_E	372_H	0.656	1.00
226_N	230_V	0.655	1.00
315_G	435_R	0.655	1.00
184_L	195_L	0.653	1.00
433_G	437_A	0.652	1.00
373_V	376_G	0.650	1.00
277_L	282_N	0.650	1.00
325_N	424_Q	0.648	1.00
141_V	146_L	0.646	1.00
241_P	253_I	0.646	1.00
279_G	282_N	0.643	1.00
109_S	185_A	0.640	1.00
100_A	155_A	0.639	1.00
329_L	428_T	0.638	1.00
224_W	228_Q	0.636	1.00
255_V	280_R	0.636	1.00
357_V	360_D	0.635	1.00
170_T	173_L	0.635	1.00
369_E	396_A	0.635	1.00
73_I	82_D	0.635	1.00
256_T	274_L	0.633	1.00
336_N	339_S	0.629	1.00
384_I	387_V	0.629	1.00
216_I	237_W	0.628	1.00
244_A	249_T	0.627	1.00
87_F	91_A	0.626	1.00
46_E	66_L	0.625	1.00
334_N	343_A	0.624	1.00
410_K	414_I	0.622	1.00
96_Q	175_R	0.621	1.00
200_K	203_G	0.620	1.00
328_L	429_I	0.619	1.00
112_T	134_N	0.618	1.00
92_A	96_Q	0.618	1.00
290_A	304_K	0.618	1.00
435_R	438_A	0.615	1.00
116_E	120_A	0.612	1.00
271_V	301_D	0.612	1.00
86_A	89_E	0.612	1.00
118_T	156_V	0.611	1.00
52_D	69_R	0.610	1.00
347_L	430_L	0.606	1.00
252_N	272_D	0.605	1.00
163_H	191_G	0.605	1.00
321_Q	327_L	0.603	1.00
253_I	262_F	0.603	1.00
266_T	300_L	0.602	1.00
219_A	240_S	0.600	1.00
220_D	241_P	0.599	1.00
354_R	385_D	0.599	1.00
132_A	147_R	0.598	1.00
103_V	122_L	0.597	1.00
181_V	199_A	0.597	1.00
386_R	416_R	0.594	1.00
390_V	437_A	0.592	1.00
86_A	91_A	0.592	1.00
121_I	125_C	0.591	1.00
253_I	256_T	0.591	1.00
189_L	193_G	0.591	1.00
50_A	54_A	0.589	1.00
290_A	307_L	0.587	1.00
390_V	407_F	0.585	1.00
129_L	148_L	0.584	1.00
105_L	180_L	0.584	1.00
352_G	427_I	0.584	1.00
225_L	228_Q	0.583	1.00
287_L	291_A	0.581	1.00
300_L	303_I	0.581	1.00
240_S	246_S	0.580	1.00
345_Q	349_E	0.578	1.00
345_Q	382_A	0.576	1.00
170_T	174_T	0.576	1.00
129_L	132_A	0.575	1.00
283_I	287_L	0.574	1.00
42_A	51_H	0.573	1.00
159_L	174_T	0.570	1.00
395_H	398_S	0.568	1.00
51_H	83_T	0.568	1.00
245_N	249_T	0.566	1.00
86_A	90_L	0.566	1.00
171_V	208_G	0.565	1.00
65_L	77_Q	0.565	1.00
344_V	384_I	0.563	1.00
42_A	65_L	0.562	1.00
131_T	134_N	0.561	1.00
410_K	413_L	0.560	1.00
375_V	378_A	0.558	1.00
70_P	73_I	0.558	1.00
113_S	117_M	0.557	1.00
368_S	373_V	0.554	1.00
237_W	248_F	0.554	1.00
291_A	295_S	0.553	1.00
421_I	427_I	0.553	1.00
385_D	422_A	0.552	1.00
103_V	154_Y	0.551	1.00
130_Y	152_Y	0.551	1.00
280_R	283_I	0.551	1.00
175_R	208_G	0.549	1.00
393_Q	397_I	0.549	1.00
129_L	152_Y	0.549	1.00
122_L	293_S	0.547	1.00
187_A	202_K	0.547	1.00
224_W	227_W	0.546	1.00
269_G	294_M	0.546	1.00
248_F	267_P	0.546	1.00
252_N	255_V	0.545	1.00
128_T	152_Y	0.545	1.00
54_A	66_L	0.544	1.00
131_T	136_N	0.542	1.00
241_P	287_L	0.538	1.00
302_A	306_G	0.538	1.00
116_E	314_P	0.537	1.00
123_S	128_T	0.537	1.00
113_S	310_L	0.537	1.00
117_M	289_A	0.535	1.00
323_A	326_Q	0.534	1.00
43_L	57_A	0.534	1.00
356_L	387_V	0.534	1.00
85_L	92_A	0.533	1.00
116_E	136_N	0.532	1.00
288_A	292_L	0.530	1.00
88_G	94_V	0.529	1.00
292_L	295_S	0.529	1.00
340_M	375_V	0.529	1.00
58_K	63_G	0.529	1.00
275_L	307_L	0.525	1.00
330_D	431_V	0.524	1.00
49_D	68_S	0.522	0.99
385_D	427_I	0.522	0.99
162_N	190_E	0.520	0.99
53_F	57_A	0.520	0.99
177_E	212_N	0.520	0.99
344_V	356_L	0.518	0.99
317_L	343_A	0.518	0.99
400_A	408_A	0.517	0.99
357_V	432_K	0.517	0.99
98_V	175_R	0.516	0.99
328_L	431_V	0.515	0.99
105_L	114_V	0.515	0.99
160_G	163_H	0.515	0.99
44_K	48_F	0.514	0.99
121_I	307_L	0.513	0.99
240_S	249_T	0.511	0.99
74_D	79_I	0.510	0.99
57_A	61_G	0.509	0.99
346_V	350_M	0.509	0.99
324_E	418_K	0.509	0.99
352_G	428_T	0.508	0.99
231_I	236_V	0.508	0.99
47_R	52_D	0.507	0.99
200_K	207_S	0.507	0.99
85_L	88_G	0.505	0.99
228_Q	236_V	0.503	0.99
129_L	156_V	0.503	0.99
92_A	175_R	0.502	0.99
433_G	438_A	0.501	0.99
121_I	298_A	0.501	0.99
357_V	431_V	0.500	0.99
45_G	48_F	0.500	0.99

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1gg4A	1	0.9668	100	0.128	Contact Map
4cvkA	1	0.9513	100	0.134	Contact Map
4qdiA	1	0.9801	100	0.135	Contact Map
3zm6A	1	0.9624	100	0.175	Contact Map
3zl8A	1	0.9292	100	0.202	Contact Map
4c12A	2	0.9668	100	0.221	Contact Map
2wtzA	1	0.9646	100	0.227	Contact Map
4bubA	1	0.9513	100	0.239	Contact Map
1e8cA	1	0.969	100	0.255	Contact Map
1p3dA	1	0.9159	100	0.377	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0124 seconds.