GREMLIN Database
NADB - L-aspartate oxidase
UniProt: P10902 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG10631
Length: 540 (507)
Sequences: 5409 (2830)
Seq/√Len: 125.7

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
12_L182_A3.9121.00
360_D364_R3.7851.00
162_A227_M3.3511.00
523_L526_S3.3461.00
9_C34_I3.2611.00
84_E88_S3.1981.00
78_C83_V3.0581.00
271_R275_T2.9911.00
275_T280_D2.9721.00
451_V501_V2.9181.00
23_L201_V2.8251.00
107_H111_N2.8201.00
86_V381_L2.7901.00
457_T508_K2.7751.00
471_Q498_E2.7481.00
450_Y462_R2.6651.00
279_P285_G2.5341.00
271_R300_E2.5261.00
258_L262_L2.5091.00
276_R286_E2.4531.00
371_Y405_D2.4511.00
457_T461_E2.4081.00
464_L501_V2.3961.00
456_T517_L2.3371.00
157_L195_C2.3331.00
186_N189_K2.2921.00
147_K150_N2.2911.00
508_K519_Y2.2861.00
14_I182_A2.2841.00
442_E466_R2.2621.00
524_T527_G2.2511.00
32_Q155_R2.2491.00
229_W499_L2.2491.00
18_A395_C2.2491.00
89_N401_S2.2381.00
8_S196_H2.1841.00
27_L406_I2.1581.00
461_E505_M2.1511.00
34_I157_L2.1341.00
468_T498_E2.1281.00
364_R405_D2.1091.00
85_F401_S2.0901.00
65_S126_H2.0571.00
318_A322_R2.0511.00
451_V463_A2.0411.00
23_L373_I2.0321.00
164_D230_R2.0191.00
297_I309_M2.0131.00
456_T459_R2.0101.00
357_V376_V2.0051.00
234_R366_D1.9981.00
18_A46_T1.9931.00
10_D198_K1.9911.00
372_A376_V1.9891.00
270_K343_P1.9721.00
225_I235_V1.9591.00
36_L184_V1.9561.00
247_A349_A1.9191.00
27_L403_A1.9081.00
184_V195_C1.8821.00
86_V398_Y1.8791.00
314_S343_P1.8601.00
139_E142_T1.8471.00
202_L376_V1.8441.00
446_F463_A1.8351.00
467_I501_V1.8321.00
169_D177_R1.8311.00
329_Y333_L1.8081.00
451_V460_L1.7551.00
447_M451_V1.7401.00
34_I195_C1.7251.00
201_V406_I1.7191.00
202_L357_V1.7121.00
204_T224_G1.7061.00
80_R84_E1.6971.00
46_T141_E1.6951.00
207_A353_T1.6851.00
270_K314_S1.6841.00
93_C96_W1.6791.00
442_E473_E1.6791.00
299_H303_R1.6571.00
464_L498_E1.6561.00
365_T372_A1.6561.00
75_A522_L1.6511.00
322_R329_Y1.6491.00
235_V238_L1.6391.00
234_R358_M1.6371.00
177_R368_E1.6351.00
67_V84_E1.6211.00
107_H115_S1.6191.00
268_Y276_R1.6161.00
362_H405_D1.6121.00
178_R369_G1.6111.00
74_G78_C1.5991.00
228_A357_V1.5941.00
111_N115_S1.5851.00
82_A361_D1.5751.00
446_F466_R1.5741.00
230_R492_N1.5701.00
464_L502_R1.5661.00
43_E48_Y1.5491.00
186_N193_E1.5471.00
56_V63_I1.5441.00
179_V200_V1.5341.00
443_L467_I1.5211.00
434_V473_E1.5161.00
11_V27_L1.5141.00
210_V500_I1.5131.00
363_G402_A1.5041.00
402_A406_I1.5041.00
95_Q99_D1.4931.00
359_V377_S1.4861.00
457_T516_T1.4851.00
228_A233_C1.4851.00
160_S186_N1.4841.00
38_K223_D1.4651.00
9_C12_L1.4631.00
463_A501_V1.4571.00
197_A200_V1.4561.00
262_L267_A1.4471.00
450_Y459_R1.4431.00
148_A156_V1.4381.00
471_Q495_Q1.4361.00
9_C155_R1.4341.00
450_Y463_A1.4331.00
466_R469_M1.4321.00
38_K221_S1.4291.00
26_R404_E1.4151.00
322_R340_T1.4071.00
93_C400_W1.4041.00
63_I67_V1.4041.00
63_I88_S1.3951.00
166_I194_T1.3911.00
82_A86_V1.3871.00
46_T395_C1.3861.00
67_V71_L1.3841.00
295_R515_F1.3821.00
89_N92_S1.3771.00
313_I316_K1.3701.00
318_A340_T1.3681.00
498_E502_R1.3661.00
11_V31_H1.3651.00
157_L160_S1.3501.00
354_C513_L1.3441.00
178_R368_E1.3431.00
298_D302_K1.3431.00
212_Q445_L1.3411.00
201_V373_I1.3381.00
199_A409_R1.3311.00
464_L505_M1.3241.00
259_T262_L1.3211.00
207_A241_N1.3191.00
215_T247_A1.3181.00
526_S529_S1.3131.00
98_I116_Y1.3081.00
457_T505_M1.3041.00
202_L370_L1.3001.00
236_A358_M1.2931.00
445_L449_D1.2871.00
9_C32_Q1.2871.00
329_Y340_T1.2861.00
236_A378_Y1.2851.00
160_S184_V1.2801.00
523_L527_G1.2781.00
54_A389_S1.2741.00
19_A373_I1.2711.00
259_T328_I1.2661.00
162_A182_A1.2661.00
165_L179_V1.2651.00
202_L228_A1.2631.00
53_I140_V1.2591.00
223_D492_N1.2561.00
276_R279_P1.2561.00
28_A31_H1.2561.00
38_K489_E1.2551.00
451_V500_I1.2531.00
21_L148_A1.2491.00
405_D409_R1.2481.00
208_S350_A1.2471.00
9_C157_L1.2371.00
269_L346_I1.2340.99
162_A184_V1.2320.99
16_S37_S1.2280.99
211_Y451_V1.2250.99
102_V140_V1.2250.99
14_I202_L1.2200.99
35_V156_V1.2110.99
36_L182_A1.2100.99
148_A154_I1.2070.99
461_E465_R1.2060.99
63_I87_A1.2000.99
82_A381_L1.1990.99
22_S26_R1.1940.99
371_Y409_R1.1920.99
90_A393_L1.1880.99
522_L527_G1.1850.99
318_A341_Q1.1760.99
68_E72_I1.1730.99
504_A514_H1.1700.99
338_D341_Q1.1680.99
450_Y466_R1.1660.99
67_V87_A1.1640.99
405_D408_R1.1590.99
160_S193_E1.1590.99
400_W404_E1.1580.99
89_N93_C1.1570.99
316_K320_F1.1560.99
11_V201_V1.1540.99
166_I183_W1.1380.99
57_F130_L1.1360.99
207_A500_I1.1340.99
457_T519_Y1.1330.99
281_F296_A1.1300.99
399_G403_A1.1290.99
85_F361_D1.1290.99
149_L158_E1.1250.99
105_D131_H1.1230.99
54_A124_H1.1210.99
25_L148_A1.1160.99
96_W400_W1.1160.99
12_L36_L1.1140.99
66_H390_N1.1080.99
230_R495_Q1.1040.99
26_R400_W1.1020.99
268_Y286_E1.1010.99
129_I389_S1.0990.99
403_A407_T1.0980.99
64_D68_E1.0940.99
138_R142_T1.0900.99
239_E507_R1.0900.99
446_F450_Y1.0840.99
23_L406_I1.0820.99
26_R403_A1.0810.99
102_V139_E1.0760.99
225_I496_V1.0710.99
10_D32_Q1.0710.99
64_D84_E1.0700.99
164_D227_M1.0700.99
277_F297_I1.0700.99
321_I329_Y1.0670.99
146_S150_N1.0650.99
272_P306_A1.0630.98
21_L35_V1.0610.98
225_I353_T1.0610.98
461_E464_L1.0590.98
145_V156_V1.0580.98
35_V148_A1.0520.98
233_C370_L1.0500.98
359_V372_A1.0410.98
265_E324_H1.0390.98
67_V80_R1.0390.98
116_Y130_L1.0370.98
53_I94_V1.0360.98
381_L398_Y1.0300.98
11_V406_I1.0260.98
23_L402_A1.0200.98
14_I162_A1.0180.98
337_I342_E1.0160.98
357_V372_A1.0140.98
127_R265_E1.0090.98
85_F89_N1.0020.98
168_S180_V1.0010.98
280_D300_E1.0010.98
440_W493_L0.9990.98
77_I511_R0.9960.98
124_H389_S0.9950.98
322_R333_L0.9920.98
12_L34_I0.9920.98
161_N488_L0.9900.98
440_W444_R0.9890.98
66_H70_T0.9880.98
300_E303_R0.9860.98
462_R466_R0.9830.97
102_V143_T0.9820.97
373_I402_A0.9810.97
319_D323_Q0.9800.97
85_F398_Y0.9800.97
441_H445_L0.9770.97
330_E334_G0.9750.97
279_P286_E0.9740.97
28_A153_N0.9720.97
466_R470_L0.9710.97
12_L197_A0.9710.97
321_I340_T0.9690.97
70_T390_N0.9690.97
100_Q147_K0.9680.97
81_H361_D0.9620.97
41_V158_E0.9610.97
91_R95_Q0.9600.97
364_R409_R0.9590.97
233_C367_V0.9590.97
41_V145_V0.9500.97
454_V517_L0.9490.97
317_P320_F0.9460.97
406_I410_M0.9460.97
468_T502_R0.9460.97
310_F343_P0.9430.97
199_A410_M0.9430.97
403_A406_I0.9420.97
103_L139_E0.9370.97
443_L490_L0.9360.97
27_L31_H0.9330.97
199_A371_Y0.9300.96
25_L100_Q0.9290.96
83_V87_A0.9280.96
124_H129_I0.9260.96
135_A327_M0.9250.96
183_W192_V0.9240.96
120_R127_R0.9240.96
65_S125_S0.9230.96
455_R504_A0.9220.96
446_F470_L0.9220.96
161_N489_E0.9210.96
474_I494_V0.9180.96
13_I33_V0.9160.96
332_L339_L0.9150.96
167_V179_V0.9140.96
26_R29_D0.9110.96
183_W194_T0.9100.96
270_K312_D0.9100.96
47_F138_R0.9050.96
440_W490_L0.9050.96
359_V379_T0.9010.96
71_L83_V0.8960.96
212_Q448_W0.8960.96
71_L78_C0.8950.96
24_A154_I0.8930.96
92_S95_Q0.8890.95
281_F300_E0.8850.95
168_S177_R0.8820.95
96_W100_Q0.8780.95
97_L140_V0.8780.95
331_K334_G0.8760.95
238_L496_V0.8740.95
165_L182_A0.8710.95
222_G496_V0.8710.95
63_I91_R0.8710.95
67_V83_V0.8710.95
226_A230_R0.8700.95
28_A33_V0.8700.95
26_R96_W0.8690.95
288_A292_I0.8690.95
165_L200_V0.8670.95
511_R520_P0.8640.95
168_S178_R0.8630.95
276_R285_G0.8580.94
443_L494_V0.8560.94
511_R519_Y0.8540.94
443_L470_L0.8530.94
268_Y315_H0.8480.94
86_V393_L0.8480.94
233_C366_D0.8450.94
226_A496_V0.8430.94
508_K526_S0.8430.94
238_L500_I0.8380.94
447_M497_A0.8360.94
359_V398_Y0.8360.94
280_D303_R0.8350.94
22_S93_C0.8350.94
53_I393_L0.8340.94
362_H401_S0.8330.94
227_M230_R0.8330.94
123_G354_C0.8280.93
250_H335_L0.8250.93
296_A299_H0.8220.93
302_K449_D0.8200.93
119_T265_E0.8170.93
106_T116_Y0.8140.93
407_T410_M0.8140.93
278_M285_G0.8120.93
471_Q494_V0.8120.93
301_M308_C0.8080.93
332_L344_V0.8070.92
203_A373_I0.8060.92
56_V87_A0.8050.92
270_K310_F0.8020.92
272_P307_D0.8020.92
262_L313_I0.7970.92
460_L501_V0.7970.92
198_K410_M0.7960.92
332_L337_I0.7950.92
68_E80_R0.7940.92
98_I106_T0.7940.92
45_S48_Y0.7920.92
82_A85_F0.7900.92
458_K462_R0.7880.92
12_L200_V0.7880.92
333_L340_T0.7870.92
267_A313_I0.7870.92
241_N500_I0.7830.91
87_A90_A0.7820.91
288_A293_V0.7810.91
107_H110_P0.7800.91
141_E145_V0.7800.91
238_L503_C0.7790.91
464_L468_T0.7790.91
28_A154_I0.7780.91
22_S96_W0.7780.91
439_N490_L0.7760.91
201_V402_A0.7740.91
419_L422_W0.7730.91
132_A139_E0.7730.91
25_L147_K0.7670.90
462_R465_R0.7670.90
467_I498_E0.7670.90
424_E427_V0.7670.90
290_R294_A0.7650.90
23_L27_L0.7640.90
450_Y501_V0.7630.90
198_K415_D0.7620.90
509_E520_P0.7600.90
337_I344_V0.7600.90
502_R506_M0.7570.90
45_S217_P0.7560.90
404_E408_R0.7560.90
260_E263_R0.7560.90
282_D288_A0.7560.90
103_L143_T0.7550.90
209_K444_R0.7550.90
472_Q476_E0.7540.90
71_L80_R0.7540.90
39_G43_E0.7540.90
32_Q153_N0.7530.90
296_A300_E0.7530.90
277_F286_E0.7530.90
13_I31_H0.7520.90
53_I396_L0.7490.89
438_H442_E0.7490.89
8_S32_Q0.7480.89
329_Y339_L0.7460.89
45_S220_S0.7450.89
28_A407_T0.7450.89
409_R413_A0.7450.89
169_D178_R0.7430.89
117_H131_H0.7420.89
164_D231_A0.7410.89
55_A94_V0.7410.89
121_E389_S0.7400.89
211_Y500_I0.7380.89
122_G284_R0.7380.89
119_T131_H0.7370.89
469_M472_Q0.7370.89
210_V496_V0.7360.89
522_L528_P0.7350.88
89_N400_W0.7340.88
249_Y308_C0.7310.88
186_N191_T0.7290.88
277_F300_E0.7290.88
39_G219_I0.7260.88
167_V177_R0.7240.88
257_L260_E0.7240.88
309_M346_I0.7240.88
313_I321_I0.7230.88
207_A225_I0.7220.88
461_E502_R0.7220.88
262_L321_I0.7210.88
79_D378_Y0.7160.87
121_E129_I0.7160.87
65_S68_E0.7150.87
442_E445_L0.7150.87
16_S35_V0.7140.87
373_I399_G0.7120.87
160_S195_C0.7110.87
12_L195_C0.7110.87
373_I403_A0.7110.87
198_K414_H0.7100.87
258_L328_I0.7080.87
258_L346_I0.7070.87
209_K493_L0.7070.87
221_S489_E0.7070.87
298_D454_V0.7070.87
199_A406_I0.7070.87
359_V363_G0.7060.86
36_L195_C0.7050.86
291_D294_A0.7050.86
321_I339_L0.7040.86
199_A369_G0.7040.86
240_F507_R0.7040.86
93_C396_L0.7030.86
299_H454_V0.7030.86
30_Q407_T0.7020.86
159_R188_N0.7020.86
177_R367_V0.7000.86
62_S65_S0.6990.86
235_V499_L0.6990.86
204_T376_V0.6970.86
306_A309_M0.6970.86
272_P308_C0.6950.86
246_T263_R0.6930.85
18_A396_L0.6930.85
180_V196_H0.6930.85
364_R368_E0.6920.85
454_V515_F0.6910.85
436_I487_L0.6910.85
145_V149_L0.6910.85
455_R514_H0.6900.85
469_M473_E0.6900.85
18_A144_L0.6900.85
320_F323_Q0.6890.85
277_F281_F0.6870.85
102_V396_L0.6870.85
441_H444_R0.6860.85
523_L529_S0.6860.85
424_E428_E0.6850.85
430_P433_R0.6840.85
244_H263_R0.6840.85
458_K461_E0.6840.85
92_S400_W0.6830.85
82_A379_T0.6830.85
291_D295_R0.6830.85
96_W99_D0.6820.84
226_A492_N0.6810.84
147_K152_P0.6790.84
275_T300_E0.6790.84
167_V180_V0.6750.84
524_T528_P0.6740.84
281_F299_H0.6730.84
468_T472_Q0.6720.84
244_H260_E0.6700.83
182_A197_A0.6700.83
434_V438_H0.6690.83
48_Y217_P0.6680.83
178_R409_R0.6680.83
13_I23_L0.6670.83
302_K517_L0.6670.83
224_G376_V0.6660.83
54_A87_A0.6650.83
364_R371_Y0.6640.83
34_I155_R0.6630.83
470_L494_V0.6600.83
369_G409_R0.6600.83
184_V193_E0.6590.82
129_I388_A0.6590.82
271_R276_R0.6580.82
446_F467_I0.6580.82
54_A129_I0.6580.82
213_Y448_W0.6570.82
510_S515_F0.6570.82
278_M282_D0.6550.82
208_S216_N0.6550.82
77_I240_F0.6540.82
297_I346_I0.6540.82
241_N353_T0.6520.82
333_L338_D0.6520.82
282_D289_P0.6520.82
60_T126_H0.6520.82
143_T147_K0.6510.82
208_S214_T0.6510.82
434_V442_E0.6510.82
103_L106_T0.6510.82
56_V66_H0.6500.82
28_A152_P0.6500.82
277_F280_D0.6480.81
103_L142_T0.6460.81
495_Q498_E0.6460.81
55_A130_L0.6450.81
9_C195_C0.6450.81
210_V497_A0.6440.81
30_Q408_R0.6430.81
269_L278_M0.6400.81
510_S520_P0.6400.81
449_D462_R0.6380.80
166_I196_H0.6370.80
408_R412_Y0.6370.80
215_T349_A0.6350.80
201_V410_M0.6350.80
36_L157_L0.6320.80
236_A379_T0.6310.80
166_I180_V0.6280.79
77_I239_E0.6280.79
463_A466_R0.6270.79
40_P158_E0.6240.79
63_I84_E0.6230.79
208_S353_T0.6230.79
298_D453_I0.6220.79
198_K416_I0.6190.78
229_W495_Q0.6190.78
522_L526_S0.6180.78
277_F352_Y0.6180.78
84_E87_A0.6180.78
422_W426_R0.6170.78
263_R266_G0.6170.78
459_R463_A0.6170.78
375_E386_R0.6160.78
54_A66_H0.6160.78
41_V156_V0.6140.78
278_M288_A0.6140.78
439_N442_E0.6130.78
30_Q404_E0.6120.78
163_V192_V0.6090.77
226_A495_Q0.6090.77
408_R413_A0.6070.77
22_S399_G0.6070.77
306_A310_F0.6060.77
13_I406_I0.6060.77
163_V185_W0.6050.77
301_M347_V0.6050.77
44_G141_E0.6040.77
449_D459_R0.6030.77
224_G231_A0.6030.77
398_Y401_S0.6010.76
165_L238_L0.6010.76
298_D347_V0.6000.76
25_L154_I0.5990.76
351_H387_M0.5980.76
95_Q98_I0.5970.76
472_Q475_D0.5960.76
119_T324_H0.5950.76
271_R277_F0.5940.75
208_S241_N0.5940.75
278_M284_R0.5910.75
25_L152_P0.5910.75
163_V183_W0.5910.75
246_T260_E0.5900.75
245_P291_D0.5890.75
144_L148_A0.5890.75
23_L399_G0.5880.75
29_D96_W0.5870.75
258_L344_V0.5870.75
142_T146_S0.5860.74
221_S492_N0.5850.74
229_W235_V0.5850.74
71_L76_G0.5850.74
521_E524_T0.5840.74
121_E388_A0.5840.74
165_L202_L0.5830.74
509_E519_Y0.5830.74
389_S394_E0.5820.74
68_E71_L0.5800.74
348_P351_H0.5780.73
460_L504_A0.5770.73
467_I494_V0.5770.73
274_G343_P0.5760.73
118_L130_L0.5750.73
40_P159_R0.5750.73
423_D427_V0.5740.73
262_L328_I0.5740.73
29_D152_P0.5740.73
10_D34_I0.5730.73
22_S100_Q0.5730.73
107_H117_H0.5720.73
371_Y406_I0.5720.73
239_E503_C0.5700.72
319_D322_R0.5680.72
447_M450_Y0.5670.72
352_Y355_G0.5670.72
208_S211_Y0.5670.72
331_K335_L0.5660.72
13_I201_V0.5660.72
243_F452_G0.5650.72
351_H386_R0.5640.72
98_I130_L0.5630.72
489_E493_L0.5630.72
47_F142_T0.5630.72
272_P304_L0.5630.72
440_W486_N0.5620.71
271_R286_E0.5610.71
207_A210_V0.5610.71
52_G244_H0.5610.71
465_R468_T0.5600.71
240_F384_A0.5580.71
179_V369_G0.5580.71
419_L424_E0.5570.71
102_V142_T0.5550.70
256_F328_I0.5550.70
406_I409_R0.5550.70
474_I491_R0.5530.70
333_L339_L0.5520.70
317_P340_T0.5500.70
439_N494_V0.5500.70
523_L528_P0.5490.70
143_T146_S0.5480.70
100_Q143_T0.5470.69
243_F350_A0.5470.69
501_V505_M0.5460.69
119_T325_F0.5450.69
318_A338_D0.5450.69
121_E124_H0.5440.69
37_S156_V0.5430.69
248_L256_F0.5420.69
242_Q386_R0.5420.69
282_D292_I0.5420.69
10_D197_A0.5400.68
301_M304_L0.5390.68
417_S461_E0.5390.68
279_P283_E0.5370.68
256_F259_T0.5360.68
213_Y255_N0.5340.68
403_A410_M0.5340.68
247_A255_N0.5340.68
180_V200_V0.5340.68
435_V438_H0.5330.67
373_I395_C0.5330.67
420_P424_E0.5330.67
182_A200_V0.5330.67
419_L423_D0.5330.67
260_E264_G0.5330.67
316_K321_I0.5320.67
180_V368_E0.5310.67
69_D128_R0.5310.67
504_A510_S0.5300.67
502_R505_M0.5290.67
439_N477_Y0.5280.67
45_S51_G0.5280.67
26_R399_G0.5270.67
70_T83_V0.5270.67
468_T471_Q0.5270.67
443_L493_L0.5250.66
361_D398_Y0.5240.66
56_V67_V0.5240.66
292_I295_R0.5230.66
134_D264_G0.5230.66
437_Q486_N0.5230.66
351_H355_G0.5230.66
440_W489_E0.5220.66
26_R30_Q0.5210.66
442_E469_M0.5210.66
35_V41_V0.5210.66
290_R385_N0.5200.66
298_D301_M0.5190.65
67_V88_S0.5190.65
362_H404_E0.5180.65
80_R528_P0.5180.65
308_C345_P0.5170.65
242_Q245_P0.5160.65
363_G398_Y0.5150.65
438_H449_D0.5150.65
256_F331_K0.5150.65
233_C365_T0.5150.65
425_S428_E0.5130.64
237_N378_Y0.5130.64
52_G260_E0.5130.64
135_A139_E0.5120.64
89_N397_V0.5120.64
498_E501_V0.5110.64
272_P310_F0.5100.64
27_L33_V0.5100.64
397_V401_S0.5100.64
167_V368_E0.5090.64
105_D133_A0.5090.64
139_E143_T0.5090.64
434_V439_N0.5080.64
423_D426_R0.5070.64
257_L263_R0.5070.64
377_S398_Y0.5070.64
185_W190_E0.5060.63
52_G263_R0.5060.63
280_D286_E0.5060.63
161_N492_N0.5060.63
87_A398_Y0.5060.63
314_S339_L0.5050.63
473_E477_Y0.5030.63
179_V370_L0.5030.63
399_G406_I0.5030.63
508_K516_T0.5010.63
215_T350_A0.5010.63
177_R180_V0.5010.63
341_Q417_S0.5010.63
420_P423_D0.5010.63
58_D126_H0.5000.63
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2bs2A 2 0.9648 100 0.25 Contact Map
2h88A 2 0.9704 100 0.254 Contact Map
1kf6A 1 0.9667 100 0.264 Contact Map
2wdqA 1 0.9685 100 0.267 Contact Map
1chuA 2 0.8852 100 0.287 Contact Map
2e5vA 1 0.8722 100 0.341 Contact Map
3gyxA 2 0.9481 100 0.346 Contact Map
1jnrA 2 0.9315 100 0.376 Contact Map
4c3xA 4 0.6981 100 0.56 Contact Map
1y0pA 1 0.6963 100 0.622 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0145 seconds.