FADL - ECOLI - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

FADL - Long-chain fatty acid transport protein

UniProt:	P10384	Sequences: MSQKTLFTKSALAVAVALISTQAWSAGFQLNEFSSSGLGRAYSGEGAIADDAGNVSRNPALITMFDRPTFSAGAVYIDPDVNISGTSPSGRSLKADNIAPTAWVPNMHFVAPINDQFGWGASITSNYGLATEFNDTYAGGSVGGTTDLETMNLNLSGAYRLNNAWSFGLGFNAVYARAKIERFAGDLGQLVAGQIMQSPAGQTQQGQALAATANGIDSNTKIAHLNGNQWGFGWNAGILYELDKNNRYALTYRSEVKIDFKGNYSSDLNRAFNNYGLPIPTATGGATQSGYLTLNLPEMWEVSGYNRVDPQWAIHYSLAYTSWSQFQQLKATSTSGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTYAFNKDASVDVGVSYMHGQSVKINEGPYQFESEGKAWLFGTNFNYAF	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG10280
Length:	446 (395)
Sequences:	3470 (2643)
Seq/√Len:	133.0

ECOLI - FADL

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
412_V	436_W	5.140	1.00
370_I	392_F	4.802	1.00
318_L	350_Y	4.780	1.00
63_T	158_A	3.768	1.00
173_A	230_W	3.690	1.00
406_A	442_F	3.586	1.00
414_Y	436_W	3.495	1.00
246_N	306_N	3.370	1.00
165_W	240_Y	3.351	1.00
298_E	322_S	3.345	1.00
324_S	348_D	3.241	1.00
394_L	416_H	3.140	1.00
360_Y	366_F	3.087	1.00
63_T	166_S	3.087	1.00
117_F	157_G	2.950	1.00
312_W	356_T	2.848	1.00
68_P	109_F	2.830	1.00
164_A	240_Y	2.819	1.00
165_W	238_I	2.805	1.00
73_G	106_N	2.714	1.00
395_S	413_S	2.691	1.00
312_W	358_Y	2.573	1.00
46_G	301_E	2.426	1.00
252_Y	298_E	2.410	1.00
173_A	232_F	2.381	1.00
46_G	303_S	2.377	1.00
47_A	305_Y	2.365	1.00
123_I	153_L	2.336	1.00
167_F	238_I	2.333	1.00
305_Y	313_A	2.321	1.00
320_Y	350_Y	2.180	1.00
250_L	302_V	2.116	1.00
363_N	400_Y	2.089	1.00
399_T	409_D	2.084	1.00
117_F	159_Y	2.076	1.00
64_M	241_E	2.053	1.00
55_V	122_S	2.021	1.00
161_L	167_F	2.001	1.00
311_Q	358_Y	2.000	1.00
407_S	443_N	1.983	1.00
41_A	371_A	1.975	1.00
246_N	304_G	1.973	1.00
61_L	239_L	1.966	1.00
68_P	111_A	1.939	1.00
121_A	153_L	1.916	1.00
67_R	112_P	1.913	1.00
372_F	392_F	1.910	1.00
410_V	440_T	1.910	1.00
174_V	258_I	1.903	1.00
35_S	439_G	1.870	1.00
354_L	370_I	1.868	1.00
62_I	156_S	1.865	1.00
76_Y	101_T	1.856	1.00
250_L	300_W	1.854	1.00
367_R	399_T	1.844	1.00
62_I	110_V	1.843	1.00
300_W	320_Y	1.831	1.00
233_G	256_V	1.829	1.00
234_W	254_S	1.822	1.00
359_Y	365_T	1.807	1.00
318_L	352_I	1.786	1.00
364_W	398_T	1.785	1.00
367_R	409_D	1.766	1.00
406_A	444_Y	1.761	1.00
322_S	325_Q	1.754	1.00
20_S	24_W	1.750	1.00
245_N	306_N	1.748	1.00
255_E	295_N	1.748	1.00
141_S	220_T	1.740	1.00
118_G	158_A	1.732	1.00
316_Y	352_I	1.731	1.00
402_F	408_V	1.726	1.00
161_L	165_W	1.717	1.00
54_N	61_L	1.667	1.00
371_A	393_W	1.663	1.00
40_R	357_T	1.642	1.00
412_V	438_F	1.599	1.00
309_D	312_W	1.594	1.00
349_A	374_D	1.593	1.00
364_W	400_Y	1.592	1.00
170_G	235_N	1.570	1.00
316_Y	354_L	1.565	1.00
314_I	356_T	1.553	1.00
322_S	348_D	1.538	1.00
243_D	246_N	1.531	1.00
238_I	250_L	1.520	1.00
63_T	118_G	1.518	1.00
257_K	295_N	1.505	1.00
360_Y	364_W	1.504	1.00
64_M	239_L	1.479	1.00
162_N	165_W	1.468	1.00
399_T	407_S	1.460	1.00
356_T	368_T	1.453	1.00
27_G	31_N	1.444	1.00
361_D	364_W	1.434	1.00
41_A	395_S	1.433	1.00
242_L	248_Y	1.432	1.00
248_Y	304_G	1.429	1.00
27_G	30_L	1.427	1.00
108_H	122_S	1.415	1.00
251_T	301_E	1.412	1.00
125_S	128_G	1.410	1.00
421_K	430_E	1.401	1.00
241_E	247_R	1.400	1.00
347_K	378_P	1.380	1.00
43_S	315_H	1.377	1.00
248_Y	302_V	1.375	1.00
123_I	151_M	1.374	1.00
235_N	253_R	1.372	1.00
365_T	399_T	1.370	1.00
68_P	112_P	1.365	1.00
169_L	236_A	1.365	1.00
405_D	444_Y	1.354	1.00
307_R	313_A	1.336	1.00
116_Q	159_Y	1.331	1.00
236_A	254_S	1.330	1.00
176_A	258_I	1.317	1.00
8_T	11_A	1.317	1.00
36_S	357_T	1.314	1.00
65_F	110_V	1.309	1.00
313_A	357_T	1.294	1.00
401_A	407_S	1.290	1.00
119_W	157_G	1.285	1.00
40_R	315_H	1.279	1.00
156_S	170_G	1.279	1.00
62_I	118_G	1.278	1.00
298_E	320_Y	1.259	1.00
247_R	305_Y	1.247	1.00
63_T	160_R	1.237	1.00
307_R	359_Y	1.237	1.00
259_D	293_T	1.236	1.00
368_T	396_A	1.231	1.00
378_P	381_N	1.223	1.00
357_T	367_R	1.203	1.00
112_P	118_G	1.192	0.99
298_E	325_Q	1.192	0.99
14_V	17_A	1.187	0.99
305_Y	315_H	1.176	0.99
258_I	296_L	1.175	0.99
113_I	119_W	1.174	0.99
74_A	103_W	1.166	0.99
411_G	439_G	1.159	0.99
176_A	260_F	1.157	0.99
231_G	258_I	1.155	0.99
398_T	410_V	1.154	0.99
171_F	232_F	1.147	0.99
308_V	312_W	1.145	0.99
175_Y	230_W	1.145	0.99
116_Q	160_R	1.121	0.99
179_K	224_H	1.119	0.99
408_V	440_T	1.114	0.99
39_G	411_G	1.113	0.99
154_N	235_N	1.111	0.99
401_A	445_A	1.103	0.99
229_Q	258_I	1.102	0.99
389_Q	417_G	1.101	0.99
62_I	158_A	1.092	0.99
319_A	353_A	1.089	0.99
255_E	298_E	1.088	0.99
111_A	119_W	1.087	0.99
408_V	442_F	1.085	0.99
15_A	18_L	1.083	0.99
152_N	174_V	1.082	0.99
308_V	314_I	1.078	0.99
38_L	413_S	1.076	0.99
8_T	12_L	1.075	0.99
164_A	242_L	1.066	0.99
13_A	16_V	1.065	0.99
116_Q	122_S	1.064	0.99
350_Y	374_D	1.053	0.99
18_L	22_Q	1.050	0.99
179_K	226_N	1.045	0.99
121_A	155_L	1.040	0.99
123_I	129_L	1.033	0.98
9_K	16_V	1.028	0.98
113_I	157_G	1.027	0.98
125_S	129_L	1.025	0.98
114_N	117_F	1.023	0.98
333_S	339_L	1.019	0.98
9_K	12_L	1.019	0.98
357_T	365_T	1.013	0.98
416_H	436_W	1.009	0.98
122_S	154_N	1.000	0.98
239_L	247_R	0.995	0.98
124_T	128_G	0.994	0.98
147_D	179_K	0.992	0.98
64_M	247_R	0.990	0.98
227_G	260_F	0.988	0.98
321_T	351_R	0.986	0.98
128_G	131_T	0.981	0.98
178_A	292_L	0.973	0.98
12_L	16_V	0.971	0.98
154_N	170_G	0.971	0.98
396_A	412_V	0.970	0.98
370_I	394_L	0.965	0.98
78_D	438_F	0.963	0.98
66_D	112_P	0.962	0.98
10_S	14_V	0.962	0.98
366_F	398_T	0.959	0.98
73_G	441_N	0.954	0.97
49_A	64_M	0.954	0.97
28_F	31_N	0.951	0.97
233_G	254_S	0.950	0.97
261_K	291_Y	0.947	0.97
159_Y	167_F	0.947	0.97
330_K	341_Q	0.946	0.97
149_E	177_R	0.943	0.97
253_R	299_M	0.942	0.97
27_G	346_F	0.941	0.97
326_F	344_E	0.941	0.97
51_D	61_L	0.941	0.97
75_V	439_G	0.939	0.97
231_G	256_V	0.938	0.97
21_T	24_W	0.932	0.97
410_V	438_F	0.926	0.97
338_T	341_Q	0.926	0.97
393_W	413_S	0.923	0.97
27_G	32_E	0.916	0.97
132_E	145_T	0.914	0.97
314_I	354_L	0.913	0.97
75_V	437_L	0.913	0.97
46_G	251_T	0.912	0.97
49_A	61_L	0.911	0.97
40_R	45_E	0.911	0.97
160_R	241_E	0.911	0.97
252_Y	300_W	0.906	0.97
264_Y	333_S	0.906	0.97
127_Y	131_T	0.906	0.97
265_S	287_T	0.905	0.97
152_N	172_N	0.903	0.96
83_I	429_F	0.900	0.96
55_V	156_S	0.899	0.96
120_G	128_G	0.896	0.96
49_A	247_R	0.894	0.96
308_V	316_Y	0.894	0.96
160_R	163_N	0.893	0.96
67_R	110_V	0.888	0.96
227_G	262_G	0.885	0.96
19_I	23_A	0.883	0.96
45_E	57_R	0.881	0.96
320_Y	348_D	0.879	0.96
49_A	54_N	0.879	0.96
280_P	283_T	0.877	0.96
46_G	249_A	0.874	0.96
122_S	125_S	0.873	0.96
174_V	256_V	0.873	0.96
65_F	69_T	0.869	0.96
71_S	441_N	0.864	0.95
71_S	443_N	0.860	0.95
389_Q	418_Q	0.858	0.95
255_E	325_Q	0.858	0.95
113_I	117_F	0.853	0.95
50_D	54_N	0.852	0.95
247_R	307_R	0.847	0.95
45_E	48_I	0.846	0.95
112_P	115_D	0.845	0.95
280_P	284_G	0.844	0.95
229_Q	260_F	0.843	0.95
122_S	129_L	0.843	0.95
116_Q	162_N	0.841	0.95
131_T	146_T	0.840	0.95
77_I	104_V	0.837	0.95
303_S	317_S	0.837	0.95
36_S	409_D	0.834	0.95
172_N	233_G	0.833	0.94
374_D	390_D	0.832	0.94
301_E	317_S	0.830	0.94
369_G	395_S	0.830	0.94
370_I	395_S	0.828	0.94
92_S	96_D	0.826	0.94
237_G	249_A	0.823	0.94
175_Y	228_N	0.822	0.94
18_L	23_A	0.816	0.94
8_T	18_L	0.815	0.94
407_S	445_A	0.815	0.94
36_S	399_T	0.813	0.94
299_M	319_A	0.811	0.94
47_A	239_L	0.811	0.94
28_F	127_Y	0.808	0.94
150_T	174_V	0.800	0.93
36_S	367_R	0.794	0.93
311_Q	362_D	0.790	0.93
318_L	354_L	0.788	0.93
283_T	286_A	0.781	0.92
29_Q	33_F	0.778	0.92
10_S	13_A	0.775	0.92
313_A	359_Y	0.774	0.92
300_W	322_S	0.774	0.92
130_A	147_D	0.772	0.92
302_V	318_L	0.768	0.92
169_L	396_A	0.764	0.91
45_E	315_H	0.763	0.91
403_N	406_A	0.762	0.91
48_I	315_H	0.762	0.91
51_D	71_S	0.761	0.91
171_F	234_W	0.760	0.91
306_N	309_D	0.760	0.91
11_A	14_V	0.758	0.91
46_G	317_S	0.758	0.91
10_S	22_Q	0.757	0.91
122_S	127_Y	0.756	0.91
123_I	128_G	0.749	0.91
14_V	18_L	0.749	0.91
235_N	240_Y	0.748	0.91
69_T	443_N	0.748	0.91
388_D	391_R	0.748	0.91
119_W	155_L	0.747	0.91
61_L	65_F	0.747	0.91
134_N	137_Y	0.743	0.90
352_I	374_D	0.742	0.90
43_S	353_A	0.739	0.90
27_G	128_G	0.736	0.90
315_H	357_T	0.736	0.90
94_K	99_A	0.736	0.90
245_N	307_R	0.735	0.90
9_K	20_S	0.734	0.90
251_T	299_M	0.733	0.90
47_A	315_H	0.732	0.90
48_I	305_Y	0.732	0.90
159_Y	162_N	0.731	0.90
50_D	357_T	0.729	0.89
130_A	145_T	0.726	0.89
419_S	430_E	0.725	0.89
181_E	224_H	0.725	0.89
245_N	309_D	0.724	0.89
333_S	337_D	0.723	0.89
155_L	173_A	0.722	0.89
47_A	61_L	0.720	0.89
164_A	241_E	0.720	0.89
125_S	150_T	0.720	0.89
423_N	426_P	0.719	0.89
164_A	243_D	0.717	0.89
245_N	308_V	0.717	0.89
423_N	428_Q	0.715	0.89
20_S	23_A	0.711	0.88
29_Q	32_E	0.711	0.88
145_T	181_E	0.710	0.88
301_E	319_A	0.709	0.88
39_G	367_R	0.707	0.88
45_E	54_N	0.704	0.88
16_V	24_W	0.702	0.88
146_T	385_S	0.702	0.88
37_G	45_E	0.702	0.88
252_Y	255_E	0.701	0.88
302_V	350_Y	0.698	0.87
62_I	120_G	0.698	0.87
123_I	127_Y	0.697	0.87
18_L	24_W	0.696	0.87
17_A	23_A	0.696	0.87
352_I	372_F	0.696	0.87
166_S	241_E	0.695	0.87
169_L	234_W	0.693	0.87
249_A	303_S	0.692	0.87
394_L	414_Y	0.691	0.87
52_A	71_S	0.690	0.87
168_G	237_G	0.687	0.87
402_F	406_A	0.683	0.86
120_G	124_T	0.682	0.86
344_E	383_S	0.679	0.86
62_I	170_G	0.676	0.86
70_F	107_M	0.675	0.86
359_Y	401_A	0.674	0.85
48_I	51_D	0.673	0.85
63_T	241_E	0.672	0.85
317_S	353_A	0.671	0.85
261_K	347_K	0.671	0.85
69_T	110_V	0.669	0.85
143_G	384_I	0.669	0.85
365_T	401_A	0.668	0.85
67_R	405_D	0.667	0.85
108_H	124_T	0.665	0.85
35_S	411_G	0.664	0.85
64_M	160_R	0.664	0.85
373_D	391_R	0.662	0.84
52_A	69_T	0.660	0.84
295_N	325_Q	0.653	0.84
186_D	268_L	0.652	0.84
79_P	129_L	0.651	0.83
375_S	390_D	0.649	0.83
167_F	171_F	0.647	0.83
337_D	340_F	0.646	0.83
406_A	410_V	0.646	0.83
49_A	63_T	0.645	0.83
55_V	62_I	0.645	0.83
116_Q	123_I	0.642	0.83
336_G	339_L	0.641	0.83
160_R	166_S	0.641	0.83
164_A	244_K	0.640	0.82
405_D	445_A	0.639	0.82
323_W	373_D	0.639	0.82
401_A	404_K	0.639	0.82
47_A	249_A	0.638	0.82
247_R	313_A	0.637	0.82
15_A	21_T	0.637	0.82
49_A	65_F	0.637	0.82
158_A	166_S	0.636	0.82
127_Y	130_A	0.636	0.82
86_T	188_G	0.635	0.82
12_L	17_A	0.635	0.82
360_Y	368_T	0.633	0.82
154_N	253_R	0.630	0.81
166_S	239_L	0.629	0.81
395_S	399_T	0.627	0.81
153_L	230_W	0.627	0.81
58_N	249_A	0.626	0.81
124_T	152_N	0.625	0.81
48_I	61_L	0.625	0.81
40_R	313_A	0.625	0.81
154_N	172_N	0.624	0.81
305_Y	359_Y	0.623	0.81
308_V	356_T	0.623	0.81
359_Y	362_D	0.623	0.81
125_S	131_T	0.622	0.81
8_T	15_A	0.621	0.81
43_S	49_A	0.619	0.80
186_D	189_Q	0.619	0.80
133_F	364_W	0.619	0.80
117_F	155_L	0.619	0.80
396_A	414_Y	0.618	0.80
280_P	285_G	0.617	0.80
16_V	20_S	0.617	0.80
54_N	247_R	0.616	0.80
350_Y	353_A	0.615	0.80
257_K	293_T	0.615	0.80
38_L	411_G	0.615	0.80
135_D	263_N	0.614	0.80
392_F	418_Q	0.612	0.80
125_S	130_A	0.611	0.79
250_L	289_S	0.609	0.79
38_L	437_L	0.608	0.79
47_A	317_S	0.605	0.79
33_F	56_S	0.604	0.79
14_V	21_T	0.604	0.79
188_G	261_K	0.603	0.79
347_K	374_D	0.603	0.79
304_G	314_I	0.602	0.78
168_G	369_G	0.602	0.78
235_N	251_T	0.602	0.78
174_V	296_L	0.601	0.78
38_L	439_G	0.600	0.78
372_F	390_D	0.599	0.78
122_S	126_N	0.597	0.78
177_R	228_N	0.597	0.78
19_I	314_I	0.596	0.78
64_M	166_S	0.595	0.78
49_A	239_L	0.592	0.77
320_Y	352_I	0.591	0.77
392_F	395_S	0.588	0.77
120_G	168_G	0.586	0.77
321_T	346_F	0.586	0.77
289_S	334_T	0.586	0.77
233_G	252_Y	0.584	0.76
170_G	233_G	0.584	0.76
9_K	21_T	0.582	0.76
11_A	15_A	0.581	0.76
113_I	338_T	0.580	0.76
54_N	64_M	0.579	0.76
290_G	331_A	0.578	0.76
9_K	22_Q	0.577	0.75
349_A	373_D	0.577	0.75
249_A	367_R	0.577	0.75
61_L	64_M	0.576	0.75
300_W	350_Y	0.576	0.75
390_D	418_Q	0.575	0.75
363_N	403_N	0.574	0.75
155_L	254_S	0.574	0.75
118_G	124_T	0.574	0.75
320_Y	324_S	0.573	0.75
219_N	283_T	0.572	0.75
319_A	351_R	0.572	0.75
394_L	398_T	0.571	0.75
80_D	434_K	0.570	0.75
311_Q	360_Y	0.570	0.75
143_G	146_T	0.569	0.74
347_K	380_Q	0.569	0.74
371_A	395_S	0.566	0.74
402_F	442_F	0.566	0.74
162_N	167_F	0.565	0.74
246_N	308_V	0.565	0.74
146_T	346_F	0.565	0.74
340_F	343_H	0.564	0.74
384_I	431_S	0.564	0.74
426_P	429_F	0.563	0.74
36_S	39_G	0.563	0.74
70_F	109_F	0.560	0.73
391_R	415_M	0.560	0.73
122_S	130_A	0.560	0.73
49_A	305_Y	0.559	0.73
19_I	22_Q	0.558	0.73
425_G	429_F	0.557	0.73
363_N	401_A	0.556	0.73
12_L	15_A	0.555	0.73
321_T	371_A	0.554	0.73
37_G	57_R	0.554	0.73
246_N	302_V	0.554	0.73
333_S	340_F	0.554	0.73
26_A	346_F	0.554	0.73
337_D	341_Q	0.554	0.73
88_P	92_S	0.553	0.72
249_A	369_G	0.552	0.72
35_S	441_N	0.551	0.72
392_F	398_T	0.550	0.72
262_G	292_L	0.548	0.72
335_S	338_T	0.547	0.72
120_G	125_S	0.546	0.71
60_A	239_L	0.545	0.71
84_S	430_E	0.545	0.71
31_N	319_A	0.544	0.71
400_Y	410_V	0.543	0.71
151_M	155_L	0.541	0.71
172_N	235_N	0.541	0.71
399_T	443_N	0.540	0.71
372_F	418_Q	0.540	0.71
40_R	43_S	0.539	0.70
74_A	78_D	0.538	0.70
425_G	432_E	0.537	0.70
237_G	251_T	0.536	0.70
359_Y	399_T	0.536	0.70
69_T	445_A	0.536	0.70
145_T	226_N	0.535	0.70
269_N	288_Q	0.535	0.70
130_A	149_E	0.534	0.70
102_A	106_N	0.534	0.70
69_T	250_L	0.534	0.70
13_A	24_W	0.533	0.70
27_G	386_I	0.532	0.70
17_A	25_S	0.531	0.69
414_Y	434_K	0.531	0.69
433_G	442_F	0.531	0.69
56_S	150_T	0.531	0.69
30_L	323_W	0.530	0.69
368_T	394_L	0.530	0.69
35_S	39_G	0.529	0.69
113_I	244_K	0.529	0.69
153_L	175_Y	0.528	0.69
352_I	356_T	0.528	0.69
43_S	47_A	0.527	0.69
440_T	444_Y	0.526	0.69
187_L	265_S	0.526	0.69
41_A	393_W	0.526	0.69
122_S	133_F	0.525	0.69
140_G	220_T	0.525	0.69
14_V	22_Q	0.524	0.68
234_W	252_Y	0.523	0.68
346_F	377_V	0.521	0.68
186_D	221_K	0.521	0.68
369_G	397_G	0.520	0.68
221_K	225_L	0.520	0.68
118_G	123_I	0.520	0.68
309_D	358_Y	0.520	0.68
117_F	120_G	0.519	0.68
30_L	33_F	0.519	0.68
35_S	409_D	0.518	0.67
43_S	355_G	0.518	0.67
55_V	65_F	0.518	0.67
410_V	442_F	0.518	0.67
153_L	162_N	0.517	0.67
55_V	120_G	0.517	0.67
188_G	220_T	0.517	0.67
264_Y	339_L	0.516	0.67
393_W	415_M	0.516	0.67
54_N	110_V	0.516	0.67
42_Y	393_W	0.516	0.67
34_S	42_Y	0.516	0.67
9_K	17_A	0.515	0.67
26_A	351_R	0.514	0.67
141_S	185_G	0.514	0.67
427_Y	430_E	0.513	0.67
296_L	329_L	0.512	0.67
182_R	385_S	0.511	0.66
87_S	93_L	0.511	0.66
54_N	62_I	0.511	0.66
82_N	96_D	0.510	0.66
427_Y	431_S	0.509	0.66
73_G	439_G	0.509	0.66
345_G	378_P	0.508	0.66
15_A	23_A	0.507	0.66
321_T	349_A	0.507	0.66
234_W	238_I	0.506	0.66
48_I	313_A	0.506	0.66
55_V	108_H	0.505	0.66
116_Q	163_N	0.504	0.65
295_N	326_F	0.504	0.65
9_K	19_I	0.504	0.65
36_S	51_D	0.504	0.65
377_V	382_R	0.503	0.65
222_I	225_L	0.503	0.65
99_A	104_V	0.503	0.65
110_V	118_G	0.502	0.65
40_R	48_I	0.501	0.65
326_F	386_I	0.501	0.65
389_Q	420_V	0.500	0.65

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3pguA	1	0.9013	100	0.302	Contact Map
3bryA	1	0.8251	100	0.31	Contact Map
3bs0A	1	0.8767	100	0.326	Contact Map
3dwoX	1	0.9081	100	0.365	Contact Map
1i78A	2	0.491	99.4	0.821	Contact Map
3qraA	1	0.3363	98.8	0.861	Contact Map
1ormA	1	0.3251	98.8	0.864	Contact Map
1qjpA	1	0.3004	98.7	0.869	Contact Map
2x27X	1	0.4126	97.9	0.894	Contact Map
2zfgA	3	0.6614	97.6	0.901	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0119 seconds.