GREMLIN Database
SLMA - Nucleoid occlusion factor SlmA
UniProt: P0C093 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG11191
Length: 198 (181)
Sequences: 48119 (37837)
Seq/√Len: 2812.4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
35_A45_E4.1341.00
27_D36_K3.9391.00
21_L40_S3.4851.00
53_P57_R2.7371.00
23_L32_I2.4021.00
137_R156_T2.2141.00
54_S57_R2.1601.00
38_A48_L2.1261.00
22_M36_K2.0311.00
22_M40_S1.9741.00
13_E65_F1.9741.00
18_S40_S1.9731.00
12_R61_S1.9701.00
25_S40_S1.9291.00
11_R14_E1.9091.00
137_R141_R1.9011.00
14_E18_S1.8941.00
87_R142_E1.8931.00
22_M32_I1.8631.00
35_A39_A1.8381.00
141_R155_E1.8311.00
83_D86_A1.8161.00
22_M27_D1.8011.00
18_S21_L1.7541.00
20_A65_F1.6661.00
44_S47_A1.6591.00
13_E17_Q1.6301.00
16_L61_S1.6211.00
19_L23_L1.5751.00
34_T49_Y1.5161.00
20_A66_I1.5061.00
141_R145_M1.4841.00
34_T45_E1.4771.00
21_L25_S1.4761.00
61_S64_E1.4731.00
141_R144_R1.4661.00
36_K39_A1.4551.00
36_K40_S1.4411.00
161_Q165_F1.4231.00
33_T36_K1.4011.00
20_A62_L1.4001.00
32_I37_L1.3781.00
75_N135_Q1.3711.00
19_L58_M1.3711.00
52_F61_S1.3681.00
60_D64_E1.3661.00
65_F69_S1.3621.00
12_R51_H1.3541.00
28_G32_I1.3481.00
10_N14_E1.3281.00
144_R151_Y1.3281.00
34_T48_L1.3211.00
142_E146_R1.3201.00
143_K148_G1.2981.00
47_A50_R1.2931.00
17_Q65_F1.2931.00
64_E124_R1.2921.00
28_G31_R1.2881.00
18_S22_M1.2831.00
89_R187_D1.2581.00
157_L188_A1.2401.00
27_D31_R1.2341.00
133_E160_S1.2241.00
60_D124_R1.2231.00
73_R94_L1.1981.00
93_L183_T1.1791.00
45_E49_Y1.1741.00
143_K149_E1.1701.00
46_A50_R1.1621.00
89_R93_L1.1621.00
23_L29_S1.1581.00
57_R61_S1.1581.00
144_R153_T1.1491.00
10_N13_E1.1361.00
154_D157_L1.1351.00
18_S41_V1.1171.00
133_E137_R1.1111.00
93_L186_F1.1101.00
56_T60_D1.1071.00
43_V47_A1.1061.00
85_T89_R1.1061.00
86_A90_L1.0961.00
139_V143_K1.0941.00
56_T120_R1.0821.00
144_R155_E1.0711.00
135_Q138_Q1.0671.00
48_L58_M1.0661.00
83_D148_G1.0611.00
104_G108_I1.0561.00
29_S59_F1.0521.00
16_L62_L1.0501.00
49_Y54_S1.0351.00
20_A24_E1.0341.00
90_L93_L1.0341.00
44_S50_R1.0341.00
105_L108_I1.0261.00
47_A51_H1.0231.00
93_L187_D1.0191.00
16_L52_F1.0151.00
11_R51_H1.0101.00
57_R60_D1.0061.00
87_R139_V1.0041.00
8_K50_R1.0031.00
37_L58_M1.0001.00
130_E134_A1.0001.00
150_G153_T0.9871.00
27_D40_S0.9811.00
17_Q21_L0.9791.00
138_Q142_E0.9761.00
19_L62_L0.9661.00
64_E68_D0.9661.00
181_R184_D0.9561.00
71_I131_R0.9551.00
38_A45_E0.9451.00
82_K90_L0.9431.00
86_A89_R0.9291.00
157_L184_D0.9251.00
73_R76_L0.9221.00
137_R159_A0.9221.00
164_A168_G0.9201.00
107_R111_G0.9191.00
94_L97_G0.9191.00
98_F102_N0.9171.00
156_T160_S0.9161.00
89_R190_W0.9091.00
77_I94_L0.9071.00
134_A138_Q0.9041.00
137_R155_E0.9021.00
11_R43_V0.9011.00
61_S65_F0.8971.00
124_R127_Q0.8851.00
77_I90_L0.8801.00
9_R13_E0.8791.00
127_Q131_R0.8771.00
66_I69_S0.8761.00
56_T118_Q0.8701.00
75_N79_K0.8701.00
90_L94_L0.8621.00
138_Q141_R0.8611.00
21_L104_G0.8561.00
153_T158_L0.8551.00
131_R135_Q0.8531.00
16_L65_F0.8491.00
123_G127_Q0.8471.00
106_T109_L0.8381.00
84_T146_R0.8361.00
14_E41_V0.8341.00
109_L112_H0.8331.00
139_V142_E0.8321.00
104_G112_H0.8261.00
24_E104_G0.8221.00
45_E50_R0.8191.00
81_E87_R0.8191.00
22_M25_S0.8041.00
84_T143_K0.8001.00
65_F68_D0.8001.00
72_T76_L0.7981.00
122_Q126_N0.7951.00
8_K11_R0.7871.00
14_E17_Q0.7871.00
27_D32_I0.7861.00
93_L97_G0.7821.00
7_A10_N0.7811.00
107_R110_T0.7801.00
142_E145_M0.7611.00
124_R128_L0.7591.00
71_I75_N0.7551.00
144_R147_E0.7541.00
82_K86_A0.7511.00
184_D188_A0.7501.00
104_G107_R0.7461.00
155_E159_A0.7451.00
186_F190_W0.7401.00
183_T187_D0.7381.00
68_D72_T0.7331.00
112_H115_M0.7311.00
134_A137_R0.7291.00
144_R149_E0.7281.00
39_A45_E0.7221.00
133_E156_T0.7181.00
173_F176_S0.7161.00
105_L109_L0.7121.00
17_Q20_A0.7061.00
29_S55_K0.7031.00
157_L161_Q0.6981.00
7_A11_R0.6971.00
25_S36_K0.6951.00
81_E86_A0.6931.00
29_S32_I0.6851.00
16_L20_A0.6851.00
15_I48_L0.6821.00
89_R92_V0.6761.00
92_V162_I0.6711.00
140_L155_E0.6671.00
64_E128_L0.6651.00
157_L160_S0.6651.00
126_N130_E0.6621.00
111_G115_M0.6591.00
81_E90_L0.6581.00
172_R175_R0.6581.00
69_S72_T0.6521.00
185_D188_A0.6521.00
140_L162_I0.6431.00
15_I41_V0.6401.00
71_I135_Q0.6391.00
29_S56_T0.6371.00
182_P186_F0.6301.00
84_T148_G0.6271.00
41_V44_S0.6251.00
87_R143_K0.6221.00
128_L132_I0.6191.00
80_D90_L0.6191.00
123_G126_N0.6181.00
186_F189_R0.6171.00
97_G183_T0.6161.00
119_D123_G0.6161.00
108_I112_H0.6141.00
164_A167_E0.6131.00
34_T38_A0.6131.00
178_F181_R0.6111.00
35_A49_Y0.6091.00
34_T55_K0.6041.00
129_F133_E0.6041.00
100_E182_P0.6031.00
76_L94_L0.6011.00
64_E127_Q0.5961.00
131_R134_A0.5961.00
106_T110_T0.5911.00
72_T75_N0.5851.00
172_R176_S0.5851.00
140_L144_R0.5851.00
112_H116_F0.5851.00
85_T148_G0.5841.00
140_L158_L0.5821.00
78_L135_Q0.5781.00
105_L110_T0.5781.00
126_N129_F0.5731.00
161_Q164_A0.5681.00
97_G101_R0.5651.00
184_D187_D0.5641.00
141_R156_T0.5631.00
9_R12_R0.5631.00
11_R47_A0.5571.00
151_Y154_D0.5511.00
23_L28_G0.5501.00
76_L80_D0.5481.00
164_A172_R0.5461.00
119_D122_Q0.5451.00
83_D87_R0.5321.00
73_R98_F0.5321.00
45_E48_L0.5301.00
108_I111_G0.5301.00
20_A69_S0.5281.00
30_Q112_H0.5281.00
19_L37_L0.5271.00
68_D128_L0.5271.00
38_A43_V0.5261.00
181_R185_D0.5231.00
50_R53_P0.5211.00
23_L59_F0.5211.00
128_L131_R0.5201.00
11_R44_S0.5191.00
77_I80_D0.5171.00
67_E131_R0.5131.00
105_L111_G0.5111.00
187_D190_W0.5111.00
22_M33_T0.5071.00
179_K183_T0.5031.00
167_E172_R0.5031.00
160_S172_R0.5011.00
15_I51_H0.5011.00
168_G171_S0.5001.00
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4gckA 2 0.9545 100 0.153 Contact Map
4udsA 2 0.9343 100 0.174 Contact Map
2ibdA 2 0.9596 100 0.182 Contact Map
2xdnA 2 0.9798 100 0.185 Contact Map
3vibA 2 0.9646 100 0.196 Contact Map
3kz9A 2 0.9899 100 0.197 Contact Map
1vi0A 2 0.9444 100 0.198 Contact Map
2iaiA 2 0.9545 100 0.199 Contact Map
3g1oA 2 0.9495 100 0.2 Contact Map
3npiA 2 0.9545 100 0.203 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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