URAA - ECOLI - GREMLIN Contacts

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URAA - Uracil permease

UniProt:	P0AGM7	Sequences: MTRRAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPVLFHINPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLLPLGYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPAEGQTPDSKTIIISITTLAVTVLGSVLFRGFLAIIPILIGVLVGYALSFAMGIVDTTPIINAHWFALPTLYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLLLYGVIGASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAKVNIGAAELKGMALATIVGIGLSLIFKLISVLRPEEVVLDAEDADITDK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG12129
Length:	429 (392)
Sequences:	4296 (2229)
Seq/√Len:	112.6

ECOLI - URAA UACT XANQ RUTG XANP YBBY
BACSU - PYRP PBUX PUCK PUCJ YWDJ

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
164_T	195_L	5.118	1.00
168_V	191_V	5.115	1.00
95_I	278_G	4.776	1.00
144_A	162_S	4.275	1.00
131_V	395_A	4.027	1.00
169_T	188_G	3.681	1.00
48_L	317_S	3.594	1.00
100_L	232_L	3.460	1.00
194_A	198_A	3.455	1.00
212_W	321_K	3.403	1.00
205_T	209_N	3.345	1.00
172_G	187_I	3.204	1.00
375_I	398_V	3.079	1.00
92_G	223_F	3.056	1.00
88_E	222_R	3.050	1.00
161_I	196_S	2.899	1.00
204_T	207_I	2.858	1.00
51_G	314_I	2.713	1.00
89_V	222_R	2.708	1.00
164_T	191_V	2.690	1.00
96_M	228_I	2.661	1.00
219_Y	279_F	2.641	1.00
372_I	399_G	2.640	1.00
161_I	201_I	2.622	1.00
210_A	321_K	2.568	1.00
364_Q	407_K	2.404	1.00
246_L	266_S	2.345	1.00
166_L	340_L	2.334	1.00
53_G	273_S	2.320	1.00
21_S	308_G	2.303	1.00
25_L	312_F	2.298	1.00
161_I	199_M	2.290	1.00
193_Y	202_V	2.221	1.00
18_I	312_F	2.207	1.00
95_I	275_V	2.206	1.00
190_L	194_A	2.200	1.00
164_T	168_V	2.179	1.00
99_V	103_L	2.143	1.00
64_K	260_D	2.136	1.00
160_I	164_T	2.089	1.00
49_F	280_F	2.058	1.00
55_L	307_G	2.055	1.00
55_L	310_A	2.038	1.00
17_T	308_G	2.013	1.00
168_V	172_G	2.013	1.00
157_K	201_I	1.960	1.00
168_V	195_L	1.953	1.00
119_L	404_L	1.949	1.00
102_C	268_F	1.943	1.00
194_A	197_F	1.932	1.00
207_I	325_A	1.929	1.00
300_V	305_V	1.916	1.00
401_G	405_I	1.906	1.00
99_V	275_V	1.904	1.00
39_F	79_V	1.886	1.00
58_L	307_G	1.886	1.00
169_T	337_V	1.870	1.00
206_P	328_M	1.866	1.00
208_I	211_H	1.864	1.00
95_I	221_P	1.860	1.00
105_S	268_F	1.834	1.00
79_V	90_A	1.776	1.00
102_C	275_V	1.769	1.00
193_Y	328_M	1.761	1.00
256_D	259_R	1.756	1.00
48_L	314_I	1.738	1.00
156_S	160_I	1.723	1.00
9_S	255_K	1.710	1.00
134_L	346_G	1.709	1.00
104_V	239_I	1.706	1.00
171_L	175_L	1.706	1.00
210_A	324_A	1.701	1.00
195_L	199_M	1.695	1.00
198_A	201_I	1.668	1.00
205_T	208_I	1.657	1.00
121_P	403_S	1.657	1.00
86_G	89_V	1.627	1.00
172_G	176_F	1.620	1.00
207_I	210_A	1.605	1.00
94_F	278_G	1.592	1.00
143_M	331_L	1.579	1.00
311_I	315_L	1.538	1.00
224_E	227_A	1.536	1.00
25_L	309_A	1.529	1.00
259_R	262_G	1.518	1.00
372_I	398_V	1.515	1.00
368_L	402_L	1.504	1.00
11_R	304_W	1.504	1.00
262_G	265_R	1.487	1.00
160_I	163_I	1.481	1.00
50_N	68_Y	1.470	1.00
179_F	183_I	1.463	1.00
163_I	167_A	1.457	1.00
180_L	187_I	1.451	1.00
98_G	275_V	1.451	1.00
397_I	401_G	1.449	1.00
157_K	199_M	1.445	1.00
192_G	333_V	1.443	1.00
166_L	371_V	1.424	1.00
375_I	394_L	1.421	1.00
80_L	83_L	1.416	1.00
195_L	198_A	1.414	1.00
123_A	369_T	1.393	1.00
85_L	224_E	1.385	1.00
206_P	209_N	1.382	1.00
55_L	58_L	1.364	1.00
384_I	387_A	1.354	1.00
176_F	180_L	1.352	1.00
255_K	262_G	1.340	1.00
89_V	224_E	1.338	1.00
145_G	153_T	1.313	1.00
98_G	274_T	1.311	1.00
197_F	204_T	1.308	1.00
251_N	357_K	1.307	1.00
98_G	271_G	1.304	0.99
76_I	80_L	1.300	0.99
24_H	291_N	1.293	0.99
295_M	301_Y	1.282	0.99
55_L	314_I	1.281	0.99
176_F	181_A	1.267	0.99
218_L	281_G	1.266	0.99
15_L	19_P	1.261	0.99
321_K	324_A	1.257	0.99
102_C	272_L	1.257	0.99
191_V	195_L	1.254	0.99
167_A	171_L	1.251	0.99
59_F	307_G	1.246	0.99
28_M	32_T	1.245	0.99
371_V	398_V	1.243	0.99
82_L	227_A	1.242	0.99
48_L	280_F	1.233	0.99
102_C	271_G	1.232	0.99
58_L	306_I	1.220	0.99
152_Q	155_D	1.209	0.99
249_T	295_M	1.209	0.99
183_I	187_I	1.208	0.99
384_I	388_E	1.193	0.99
245_H	289_G	1.189	0.99
360_Y	369_T	1.184	0.99
52_I	314_I	1.175	0.99
131_V	376_G	1.172	0.99
358_V	365_N	1.165	0.99
149_A	152_Q	1.164	0.99
54_T	68_Y	1.152	0.99
62_K	265_R	1.149	0.99
83_L	90_A	1.144	0.99
223_F	228_I	1.139	0.99
42_N	217_T	1.132	0.99
67_A	249_T	1.128	0.99
218_L	279_F	1.123	0.98
101_F	238_V	1.122	0.98
214_A	320_G	1.117	0.98
92_G	96_M	1.116	0.98
250_A	257_L	1.112	0.98
61_C	272_L	1.111	0.98
187_I	191_V	1.110	0.98
123_A	127_A	1.109	0.98
70_G	288_Y	1.104	0.98
72_S	238_V	1.099	0.98
141_A	378_S	1.089	0.98
319_V	323_A	1.089	0.98
95_I	279_F	1.080	0.98
92_G	221_P	1.069	0.98
37_V	43_P	1.061	0.98
74_A	238_V	1.058	0.98
385_G	389_L	1.048	0.98
373_L	377_V	1.041	0.97
246_L	270_N	1.040	0.97
82_L	231_I	1.034	0.97
69_L	287_T	1.031	0.97
164_T	199_M	1.030	0.97
130_A	373_L	1.024	0.97
149_A	153_T	1.022	0.97
12_P	302_S	1.021	0.97
245_H	292_I	1.020	0.97
241_E	286_T	1.018	0.97
12_P	17_T	1.015	0.97
242_H	246_L	1.008	0.97
157_K	160_I	1.005	0.97
277_S	285_N	1.000	0.97
88_E	220_T	0.992	0.97
160_I	199_M	0.990	0.97
27_A	294_V	0.989	0.97
81_L	84_P	0.989	0.97
157_K	161_I	0.989	0.97
103_L	107_I	0.986	0.97
193_Y	204_T	0.983	0.96
142_G	153_T	0.980	0.96
52_I	276_I	0.976	0.96
14_L	18_I	0.975	0.96
52_I	56_L	0.970	0.96
78_P	234_A	0.969	0.96
196_S	200_G	0.963	0.96
197_F	202_V	0.960	0.96
97_C	235_A	0.954	0.96
140_A	162_S	0.954	0.96
315_L	319_V	0.947	0.96
8_V	11_R	0.947	0.96
215_L	218_L	0.946	0.96
177_R	181_A	0.946	0.96
161_I	195_L	0.942	0.95
68_Y	309_A	0.939	0.95
150_E	155_D	0.939	0.95
22_L	312_F	0.938	0.95
137_A	374_I	0.935	0.95
225_W	228_I	0.933	0.95
367_I	371_V	0.926	0.95
155_D	158_T	0.924	0.95
48_L	218_L	0.923	0.95
67_A	287_T	0.923	0.95
171_L	405_I	0.922	0.95
276_I	280_F	0.921	0.95
196_S	201_I	0.914	0.95
12_P	305_V	0.909	0.95
55_L	311_I	0.907	0.94
158_T	332_P	0.902	0.94
168_V	188_G	0.901	0.94
203_D	206_P	0.897	0.94
242_H	266_S	0.894	0.94
304_W	307_G	0.894	0.94
18_I	22_L	0.894	0.94
11_R	17_T	0.892	0.94
35_V	73_F	0.891	0.94
99_V	102_C	0.889	0.94
114_G	264_H	0.886	0.94
135_E	392_M	0.883	0.94
253_V	301_Y	0.876	0.93
13_P	16_Q	0.874	0.93
93_G	97_C	0.874	0.93
166_L	170_V	0.868	0.93
60_I	272_L	0.865	0.93
57_Y	65_I	0.862	0.93
24_H	28_M	0.860	0.93
347_A	366_L	0.859	0.93
18_I	308_G	0.856	0.93
24_H	27_A	0.854	0.92
105_S	264_H	0.853	0.92
130_A	350_I	0.851	0.92
361_N	365_N	0.846	0.92
153_T	382_V	0.845	0.92
51_G	310_A	0.842	0.92
186_L	190_L	0.837	0.92
307_G	310_A	0.832	0.91
173_S	367_I	0.830	0.91
160_I	195_L	0.821	0.91
85_L	227_A	0.815	0.91
150_E	153_T	0.811	0.90
215_L	318_C	0.811	0.90
49_F	276_I	0.810	0.90
207_I	321_K	0.810	0.90
89_V	227_A	0.807	0.90
292_I	295_M	0.806	0.90
67_A	294_V	0.804	0.90
322_L	325_A	0.803	0.90
129_V	245_H	0.800	0.90
364_Q	368_L	0.798	0.90
37_V	334_M	0.798	0.90
242_H	270_N	0.796	0.90
143_M	342_Y	0.795	0.90
120_F	396_T	0.795	0.90
31_A	290_E	0.792	0.89
172_G	188_G	0.792	0.89
204_T	328_M	0.792	0.89
140_A	165_T	0.790	0.89
253_V	256_D	0.790	0.89
236_L	240_A	0.788	0.89
193_Y	329_I	0.787	0.89
212_W	319_V	0.785	0.89
67_A	246_L	0.782	0.89
106_F	268_F	0.779	0.89
196_S	199_M	0.776	0.88
346_G	373_L	0.774	0.88
101_F	271_G	0.774	0.88
368_L	372_I	0.773	0.88
226_F	230_T	0.769	0.88
93_G	227_A	0.763	0.88
176_F	179_F	0.761	0.87
211_H	214_A	0.760	0.87
243_V	263_L	0.760	0.87
272_L	276_I	0.760	0.87
68_Y	306_I	0.760	0.87
25_L	316_L	0.760	0.87
46_V	283_T	0.757	0.87
32_T	35_V	0.752	0.87
49_F	277_S	0.751	0.87
242_H	286_T	0.750	0.87
340_L	367_I	0.748	0.86
173_S	297_I	0.748	0.86
58_L	303_T	0.747	0.86
95_I	99_V	0.746	0.86
91_L	95_I	0.745	0.86
20_L	24_H	0.742	0.86
163_I	199_M	0.740	0.86
171_L	176_F	0.740	0.86
18_I	208_I	0.740	0.86
307_G	311_I	0.738	0.86
145_G	159_I	0.735	0.86
88_E	91_L	0.734	0.85
72_S	286_T	0.734	0.85
172_G	191_V	0.733	0.85
225_W	229_L	0.732	0.85
207_I	328_M	0.732	0.85
31_A	342_Y	0.729	0.85
145_G	154_P	0.725	0.85
77_S	80_L	0.724	0.85
127_A	372_I	0.724	0.85
74_A	341_L	0.724	0.85
202_V	328_M	0.723	0.85
71_S	75_F	0.723	0.85
371_V	402_L	0.721	0.84
35_V	71_S	0.719	0.84
28_M	291_N	0.719	0.84
49_F	282_S	0.718	0.84
187_I	190_L	0.717	0.84
72_S	75_F	0.717	0.84
89_V	93_G	0.716	0.84
34_L	143_M	0.712	0.84
274_T	285_N	0.711	0.84
108_V	267_M	0.711	0.84
347_A	369_T	0.711	0.84
44_A	323_A	0.711	0.84
379_G	394_L	0.709	0.83
238_V	286_T	0.709	0.83
21_S	309_A	0.708	0.83
115_W	119_L	0.706	0.83
129_V	132_I	0.705	0.83
143_M	334_M	0.704	0.83
142_G	145_G	0.703	0.83
28_M	68_Y	0.702	0.83
215_L	317_S	0.701	0.83
316_L	322_L	0.698	0.82
105_S	271_G	0.696	0.82
119_L	400_I	0.696	0.82
324_A	328_M	0.696	0.82
236_L	248_V	0.695	0.82
150_E	154_P	0.695	0.82
249_T	287_T	0.694	0.82
66_P	306_I	0.693	0.82
56_L	269_A	0.693	0.82
370_S	374_I	0.692	0.82
76_I	236_L	0.690	0.82
368_L	407_K	0.689	0.82
32_T	50_N	0.687	0.81
137_A	377_V	0.687	0.81
48_L	318_C	0.686	0.81
376_G	395_A	0.685	0.81
261_P	265_R	0.685	0.81
256_D	261_P	0.684	0.81
45_T	49_F	0.683	0.81
153_T	156_S	0.682	0.81
212_W	216_P	0.680	0.81
56_L	60_I	0.680	0.81
161_I	332_P	0.678	0.81
221_P	278_G	0.676	0.80
52_I	280_F	0.674	0.80
312_F	316_L	0.674	0.80
275_V	279_F	0.673	0.80
188_G	191_V	0.670	0.80
182_I	407_K	0.668	0.80
185_I	294_V	0.667	0.80
376_G	391_G	0.666	0.79
189_V	337_V	0.664	0.79
353_L	358_V	0.663	0.79
46_V	50_N	0.661	0.79
69_L	242_H	0.657	0.78
400_I	404_L	0.657	0.78
22_L	145_G	0.656	0.78
232_L	235_A	0.656	0.78
298_T	312_F	0.656	0.78
194_A	315_L	0.652	0.78
8_V	12_P	0.652	0.78
254_K	301_Y	0.649	0.78
50_N	67_A	0.649	0.78
252_I	296_A	0.648	0.78
101_F	239_I	0.647	0.77
324_A	327_Q	0.647	0.77
375_I	379_G	0.647	0.77
45_T	218_L	0.646	0.77
159_I	163_I	0.646	0.77
253_V	257_L	0.644	0.77
30_G	36_P	0.644	0.77
172_G	184_P	0.644	0.77
144_A	339_L	0.642	0.77
45_T	48_L	0.642	0.77
207_I	324_A	0.641	0.77
165_T	192_G	0.641	0.77
95_I	223_F	0.641	0.77
32_T	46_V	0.638	0.76
215_L	236_L	0.638	0.76
343_G	366_L	0.638	0.76
123_A	365_N	0.635	0.76
241_E	270_N	0.634	0.76
46_V	71_S	0.628	0.75
236_L	400_I	0.628	0.75
296_A	351_R	0.628	0.75
130_A	353_L	0.628	0.75
238_V	241_E	0.628	0.75
197_F	405_I	0.628	0.75
231_I	332_P	0.627	0.75
343_G	347_A	0.627	0.75
82_L	93_G	0.627	0.75
24_H	294_V	0.623	0.75
101_F	235_A	0.622	0.75
174_V	347_A	0.622	0.75
191_V	194_A	0.621	0.75
190_L	325_A	0.621	0.75
125_M	320_G	0.618	0.74
123_A	368_L	0.618	0.74
155_D	160_I	0.614	0.74
51_G	55_L	0.613	0.74
42_N	57_Y	0.612	0.73
28_M	351_R	0.611	0.73
289_G	348_S	0.609	0.73
114_G	118_V	0.608	0.73
249_T	292_I	0.607	0.73
74_A	132_I	0.604	0.72
172_G	180_L	0.603	0.72
79_V	94_F	0.603	0.72
135_E	390_K	0.601	0.72
151_G	156_S	0.601	0.72
167_A	170_V	0.600	0.72
150_E	158_T	0.600	0.72
169_T	340_L	0.599	0.72
39_F	189_V	0.599	0.72
85_L	222_R	0.599	0.72
65_I	266_S	0.599	0.72
43_P	327_Q	0.598	0.72
151_G	400_I	0.597	0.72
40_H	43_P	0.595	0.71
245_H	348_S	0.593	0.71
360_Y	365_N	0.593	0.71
189_V	240_A	0.593	0.71
266_S	270_N	0.592	0.71
53_G	269_A	0.592	0.71
103_L	167_A	0.591	0.71
20_L	289_G	0.591	0.71
174_V	345_I	0.591	0.71
189_V	334_M	0.590	0.71
77_S	81_L	0.590	0.71
374_I	377_V	0.590	0.71
96_M	232_L	0.588	0.70
120_F	178_G	0.585	0.70
199_M	322_L	0.584	0.70
143_M	338_S	0.583	0.70
63_G	262_G	0.583	0.70
14_L	312_F	0.582	0.70
169_T	172_G	0.580	0.69
40_H	324_A	0.580	0.69
210_A	320_G	0.580	0.69
192_G	200_G	0.579	0.69
34_L	37_V	0.578	0.69
102_C	106_F	0.578	0.69
66_P	98_G	0.578	0.69
369_T	373_L	0.577	0.69
30_G	290_E	0.576	0.69
290_E	342_Y	0.575	0.69
121_P	293_G	0.575	0.69
128_I	166_L	0.574	0.69
14_L	17_T	0.574	0.69
115_W	120_F	0.573	0.69
154_P	158_T	0.573	0.69
395_A	399_G	0.571	0.68
49_F	273_S	0.571	0.68
66_P	253_V	0.570	0.68
205_T	210_A	0.568	0.68
248_V	348_S	0.568	0.68
60_I	261_P	0.567	0.68
206_P	280_F	0.567	0.68
406_F	409_I	0.567	0.68
66_P	93_G	0.566	0.68
224_E	231_I	0.565	0.67
130_A	346_G	0.565	0.67
235_A	274_T	0.565	0.67
139_V	143_M	0.564	0.67
137_A	370_S	0.563	0.67
145_G	149_A	0.561	0.67
364_Q	402_L	0.561	0.67
87_Y	91_L	0.560	0.67
78_P	391_G	0.559	0.67
245_H	287_T	0.559	0.67
103_L	163_I	0.558	0.66
93_G	232_L	0.558	0.66
91_L	97_C	0.558	0.66
33_V	43_P	0.558	0.66
132_I	288_Y	0.557	0.66
243_V	247_V	0.557	0.66
54_T	286_T	0.557	0.66
274_T	277_S	0.556	0.66
126_G	349_G	0.554	0.66
85_L	299_R	0.552	0.66
334_M	337_V	0.552	0.66
213_F	319_V	0.550	0.65
127_A	399_G	0.550	0.65
161_I	189_V	0.550	0.65
168_V	187_I	0.550	0.65
8_V	302_S	0.550	0.65
79_V	83_L	0.550	0.65
79_V	231_I	0.550	0.65
149_A	154_P	0.549	0.65
57_Y	303_T	0.549	0.65
364_Q	408_L	0.548	0.65
317_S	323_A	0.548	0.65
137_A	339_L	0.547	0.65
360_Y	366_L	0.547	0.65
315_L	387_A	0.547	0.65
300_V	334_M	0.546	0.65
171_L	401_G	0.545	0.65
270_N	286_T	0.544	0.65
158_T	201_I	0.543	0.64
291_N	294_V	0.543	0.64
108_V	121_P	0.542	0.64
257_L	262_G	0.542	0.64
272_L	275_V	0.542	0.64
69_L	274_T	0.540	0.64
351_R	357_K	0.539	0.64
38_L	80_L	0.539	0.64
247_V	299_R	0.538	0.64
84_P	224_E	0.538	0.64
173_S	184_P	0.537	0.64
74_A	286_T	0.537	0.64
303_T	307_G	0.537	0.64
48_L	389_L	0.537	0.64
167_A	214_A	0.536	0.63
21_S	129_V	0.536	0.63
244_G	376_G	0.534	0.63
242_H	287_T	0.533	0.63
158_T	161_I	0.531	0.63
90_A	93_G	0.530	0.63
391_G	395_A	0.530	0.63
198_A	215_L	0.530	0.63
178_G	188_G	0.530	0.63
289_G	393_A	0.528	0.62
55_L	59_F	0.528	0.62
250_A	254_K	0.527	0.62
145_G	331_L	0.526	0.62
130_A	169_T	0.526	0.62
35_V	46_V	0.525	0.62
238_V	246_L	0.525	0.62
220_T	279_F	0.524	0.62
199_M	203_D	0.523	0.62
180_L	184_P	0.522	0.61
159_I	162_S	0.521	0.61
119_L	403_S	0.520	0.61
197_F	200_G	0.519	0.61
142_G	190_L	0.519	0.61
64_K	167_A	0.519	0.61
375_I	380_A	0.518	0.61
159_I	380_A	0.518	0.61
202_V	206_P	0.517	0.61
289_G	292_I	0.517	0.61
121_P	126_G	0.516	0.61
371_V	377_V	0.516	0.61
45_T	281_G	0.515	0.60
69_L	246_L	0.515	0.60
73_F	134_L	0.515	0.60
368_L	378_S	0.514	0.60
32_T	313_A	0.514	0.60
200_G	333_V	0.514	0.60
20_L	344_V	0.514	0.60
351_R	360_Y	0.514	0.60
178_G	181_A	0.513	0.60
181_A	360_Y	0.513	0.60
102_C	376_G	0.512	0.60
32_T	71_S	0.511	0.60
194_A	208_I	0.510	0.60
135_E	391_G	0.509	0.59
383_N	386_A	0.509	0.59
18_I	315_L	0.509	0.59
118_V	404_L	0.509	0.59
101_F	105_S	0.509	0.59
71_S	140_A	0.508	0.59
115_W	260_D	0.508	0.59
353_L	366_L	0.507	0.59
199_M	398_V	0.507	0.59
368_L	404_L	0.505	0.59
57_Y	62_K	0.505	0.59
81_L	86_G	0.505	0.59
193_Y	197_F	0.504	0.59
270_N	370_S	0.504	0.59
194_A	213_F	0.503	0.59
217_T	278_G	0.503	0.59
272_L	307_G	0.502	0.58
250_A	255_K	0.502	0.58
11_R	14_L	0.501	0.58
100_L	235_A	0.501	0.58
8_V	35_V	0.501	0.58
86_G	222_R	0.500	0.58
348_S	351_R	0.500	0.58

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3qe7A	2	0.9487	100	0.336	Contact Map
3o7qA	1	0.4499	75.8	0.961	Contact Map
2jlnA	1	0.8741	74.9	0.961	Contact Map
3wdoA	1	0.8695	69.9	0.963	Contact Map
1pw4A	1	0.4709	62.9	0.964	Contact Map
2cfqA	1	0.4476	42	0.969	Contact Map
4j05A	3	0.8368	40.6	0.969	Contact Map
4ltoA	3	0.2611	34.1	0.97	Contact Map
3mktA	1	0.9627	32.5	0.97	Contact Map
4f35D	2	0.5361	30.5	0.971	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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