SYY - ECOLI - GREMLIN Contacts

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SYY - Tyrosine--tRNA ligase

UniProt:	P0AGJ9	Sequences: MASSNLIKQLQERGLVAQVTDEEALAERLAQGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNREDQGISFTEFSYNLLQGYDFACLNKQYGVVLQIGGSDQWGNITSGIDLTRRLHQNQVFGLTVPLITKADGTKFGKTEGGAVWLDPKKTSPYKFYQFWINTADADVYRFLKFFTFMSIEEINALEEEDKNSGKAPRAQYVLAEQVTRLVHGEEGLQAAKRITECLFSGSLSALSEADFEQLAQDGVPMVEMEKGADLMQALVDSELQPSRGQARKTIASNAITINGEKQSDPEYFFKEEDRLFGRFTLLRRGKKNYCLICWK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG11043
Length:	424 (392)
Sequences:	3955 (2199)
Seq/√Len:	111.0

ECOLI - SYY
BACSU - SYY1 SYY2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
314_E	318_Q	4.178	1.00
185_C	189_Q	3.878	1.00
309_R	314_E	3.398	1.00
361_Q	372_R	3.328	1.00
305_E	321_K	3.240	1.00
134_N	137_T	3.221	1.00
85_K	240_E	3.037	1.00
124_A	128_D	3.006	1.00
385_T	412_R	3.001	1.00
67_K	122_I	2.954	1.00
269_Y	287_E	2.885	1.00
205_I	222_G	2.876	1.00
212_T	220_V	2.807	1.00
229_T	270_R	2.603	1.00
11_Q	22_E	2.561	1.00
42_P	77_G	2.549	1.00
59_K	63_Q	2.532	1.00
313_G	316_G	2.508	1.00
35_A	67_K	2.472	1.00
102_D	105_R	2.447	1.00
184_A	215_L	2.407	1.00
288_E	292_N	2.320	1.00
316_G	319_A	2.301	1.00
21_D	24_A	2.291	1.00
358_D	361_Q	2.226	1.00
188_K	216_H	2.211	1.00
27_E	31_Q	2.147	1.00
158_K	162_N	2.124	1.00
382_N	390_K	2.104	1.00
269_Y	273_K	2.083	1.00
309_R	317_L	2.044	1.00
184_A	188_K	2.015	1.00
38_C	54_P	1.964	1.00
55_L	108_V	1.960	1.00
187_N	218_N	1.959	1.00
93_T	96_T	1.948	1.00
285_A	289_E	1.944	1.00
282_E	285_A	1.937	1.00
385_T	390_K	1.924	1.00
98_Q	102_D	1.921	1.00
369_Q	375_A	1.917	1.00
99_E	103_K	1.909	1.00
105_R	109_A	1.899	1.00
36_L	61_F	1.897	1.00
114_F	121_A	1.885	1.00
380_A	394_P	1.868	1.00
370_P	374_Q	1.856	1.00
28_R	34_I	1.842	1.00
75_A	130_F	1.820	1.00
99_E	102_D	1.817	1.00
301_Y	325_E	1.808	1.00
362_A	421_I	1.789	1.00
94_E	98_Q	1.788	1.00
273_K	287_E	1.785	1.00
363_L	384_I	1.743	1.00
305_E	317_L	1.724	1.00
145_H	214_R	1.724	1.00
35_A	69_V	1.718	1.00
364_V	372_R	1.717	1.00
36_L	58_L	1.711	1.00
71_L	186_L	1.703	1.00
230_K	234_T	1.680	1.00
78_L	94_E	1.668	1.00
284_N	287_E	1.662	1.00
12_E	280_I	1.656	1.00
321_K	325_E	1.646	1.00
130_F	133_M	1.624	1.00
287_E	291_K	1.621	1.00
280_I	284_N	1.618	1.00
187_N	216_H	1.618	1.00
305_E	318_Q	1.616	1.00
285_A	288_E	1.612	1.00
368_L	419_C	1.611	1.00
146_F	207_S	1.608	1.00
279_S	282_E	1.605	1.00
378_T	383_A	1.591	1.00
374_Q	378_T	1.587	1.00
101_V	125_N	1.582	1.00
96_T	99_E	1.582	1.00
180_G	207_S	1.574	1.00
293_S	296_A	1.559	1.00
69_V	124_A	1.554	1.00
373_G	377_K	1.548	1.00
92_N	96_T	1.546	1.00
362_A	398_F	1.539	1.00
127_Y	131_G	1.534	1.00
20_T	222_G	1.526	1.00
356_G	397_F	1.523	1.00
54_P	225_V	1.522	1.00
40_F	55_L	1.515	1.00
87_A	90_K	1.506	1.00
267_D	270_R	1.505	1.00
302_V	306_Q	1.497	1.00
210_D	213_R	1.485	1.00
38_C	196_I	1.461	1.00
256_F	307_V	1.457	1.00
318_Q	322_R	1.450	1.00
234_T	240_E	1.445	1.00
359_L	391_Q	1.444	1.00
378_T	381_S	1.439	1.00
369_Q	378_T	1.433	1.00
113_D	120_S	1.433	1.00
257_Y	321_K	1.431	1.00
74_G	125_N	1.428	1.00
378_T	413_R	1.427	1.00
124_A	186_L	1.426	1.00
24_A	28_R	1.425	1.00
298_R	301_Y	1.420	1.00
40_F	47_L	1.408	1.00
256_F	308_T	1.406	1.00
9_Q	12_E	1.405	1.00
412_R	418_Y	1.404	1.00
377_K	381_S	1.400	1.00
315_E	319_A	1.395	1.00
24_A	29_L	1.393	1.00
264_A	267_D	1.376	1.00
92_N	100_W	1.361	1.00
40_F	54_P	1.360	1.00
278_M	302_V	1.344	1.00
278_M	306_Q	1.333	1.00
147_S	167_G	1.317	1.00
49_L	260_W	1.297	0.99
61_F	194_L	1.297	0.99
364_V	369_Q	1.288	0.99
374_Q	377_K	1.279	0.99
358_D	372_R	1.275	0.99
22_E	26_A	1.271	0.99
297_P	301_Y	1.270	0.99
115_D	120_S	1.266	0.99
316_G	320_A	1.265	0.99
269_Y	290_D	1.263	0.99
282_E	302_V	1.262	0.99
74_G	127_Y	1.252	0.99
248_P	253_P	1.248	0.99
244_V	260_W	1.248	0.99
184_A	212_T	1.242	0.99
317_L	324_T	1.234	0.99
102_D	106_K	1.233	0.99
289_E	293_S	1.230	0.99
135_V	138_F	1.229	0.99
289_E	298_R	1.221	0.99
18_Q	21_D	1.213	0.99
69_V	122_I	1.199	0.99
359_L	396_Y	1.199	0.99
288_E	291_K	1.195	0.99
23_E	27_E	1.193	0.99
70_A	108_V	1.193	0.99
58_L	61_F	1.185	0.99
384_I	413_R	1.174	0.99
187_N	217_Q	1.168	0.99
45_D	99_E	1.159	0.99
278_M	282_E	1.158	0.99
301_Y	321_K	1.151	0.99
18_Q	202_W	1.148	0.99
150_Q	153_N	1.144	0.99
184_A	216_H	1.143	0.99
322_R	325_E	1.136	0.99
154_K	206_T	1.129	0.98
360_M	379_I	1.123	0.98
306_Q	309_R	1.116	0.98
155_E	159_Q	1.115	0.98
256_F	260_W	1.115	0.98
386_I	409_T	1.114	0.98
269_Y	284_N	1.114	0.98
361_Q	365_D	1.107	0.98
281_E	284_N	1.099	0.98
318_Q	321_K	1.098	0.98
305_E	309_R	1.098	0.98
382_N	392_S	1.094	0.98
230_K	242_G	1.090	0.98
398_F	409_T	1.089	0.98
106_K	247_D	1.087	0.98
18_Q	224_T	1.085	0.98
28_R	31_Q	1.077	0.98
130_F	178_L	1.077	0.98
29_L	34_I	1.072	0.98
11_Q	26_A	1.071	0.98
273_K	280_I	1.070	0.98
253_P	312_H	1.068	0.98
130_F	181_Y	1.066	0.98
366_S	419_C	1.066	0.98
25_L	28_R	1.064	0.98
125_N	128_D	1.064	0.98
360_M	372_R	1.062	0.98
284_N	288_E	1.054	0.98
352_E	365_D	1.053	0.98
135_V	178_L	1.047	0.97
393_D	396_Y	1.038	0.97
56_L	310_L	1.036	0.97
254_Y	323_I	1.033	0.97
57_C	225_V	1.033	0.97
357_A	362_A	1.029	0.97
301_Y	305_E	1.028	0.97
159_Q	163_R	1.024	0.97
69_V	186_L	1.024	0.97
317_L	321_K	1.023	0.97
28_R	32_G	1.021	0.97
151_M	173_F	1.020	0.97
163_R	166_Q	1.006	0.97
377_K	383_A	1.001	0.97
51_H	54_P	0.996	0.97
56_L	277_F	0.995	0.97
359_L	379_I	0.995	0.97
283_I	287_E	0.990	0.96
17_A	199_S	0.984	0.96
258_Q	262_N	0.983	0.96
357_A	365_D	0.979	0.96
185_C	188_K	0.979	0.96
135_V	174_S	0.976	0.96
272_L	303_L	0.974	0.96
16_V	19_V	0.973	0.96
9_Q	60_R	0.972	0.96
236_F	259_F	0.963	0.96
315_E	318_Q	0.956	0.96
248_P	316_G	0.946	0.95
184_A	211_L	0.945	0.95
194_L	223_L	0.943	0.95
256_F	311_V	0.942	0.95
323_I	326_C	0.940	0.95
413_R	417_N	0.940	0.95
343_L	410_L	0.934	0.95
53_V	228_I	0.934	0.95
319_A	322_R	0.932	0.95
35_A	122_I	0.930	0.95
272_L	286_L	0.926	0.95
273_K	283_I	0.926	0.95
67_K	120_S	0.926	0.95
403_R	409_T	0.925	0.95
133_M	181_Y	0.924	0.95
94_E	131_G	0.923	0.95
83_S	168_I	0.918	0.95
359_L	384_I	0.918	0.95
59_K	277_F	0.916	0.95
139_L	178_L	0.912	0.94
363_L	411_L	0.903	0.94
391_Q	396_Y	0.900	0.94
138_F	177_L	0.893	0.94
298_R	302_V	0.893	0.94
19_V	22_E	0.891	0.94
60_R	64_A	0.890	0.94
15_L	60_R	0.889	0.94
55_L	111_F	0.886	0.93
369_Q	384_I	0.885	0.93
302_V	305_E	0.885	0.93
15_L	274_F	0.881	0.93
145_H	215_L	0.879	0.93
142_I	181_Y	0.878	0.93
276_T	306_Q	0.877	0.93
268_V	295_K	0.876	0.93
228_I	275_F	0.874	0.93
38_C	51_H	0.873	0.93
370_P	417_N	0.872	0.93
322_R	326_C	0.871	0.93
286_L	302_V	0.871	0.93
296_A	300_Q	0.871	0.93
252_S	255_K	0.871	0.93
255_K	258_Q	0.870	0.93
45_D	51_H	0.868	0.93
109_A	121_A	0.866	0.93
205_I	224_T	0.865	0.93
244_V	259_F	0.864	0.93
410_L	420_L	0.863	0.93
34_I	66_H	0.862	0.93
305_E	314_E	0.859	0.92
15_L	223_L	0.858	0.92
71_L	124_A	0.855	0.92
139_L	174_S	0.854	0.92
28_R	218_N	0.846	0.92
44_A	51_H	0.846	0.92
12_E	284_N	0.844	0.92
272_L	302_V	0.838	0.91
27_E	30_A	0.837	0.91
286_L	290_D	0.837	0.91
102_D	109_A	0.835	0.91
62_Q	121_A	0.835	0.91
25_L	194_L	0.833	0.91
287_E	290_D	0.829	0.91
257_Y	301_Y	0.826	0.91
276_T	307_V	0.822	0.91
369_Q	374_Q	0.822	0.91
60_R	63_Q	0.819	0.91
398_F	421_I	0.819	0.91
260_W	275_F	0.816	0.90
289_E	294_G	0.814	0.90
323_I	327_L	0.813	0.90
108_V	123_A	0.812	0.90
105_R	123_A	0.811	0.90
316_G	324_T	0.810	0.90
386_I	411_L	0.806	0.90
360_M	376_R	0.806	0.90
407_R	422_C	0.803	0.90
184_A	220_V	0.803	0.90
258_Q	328_F	0.803	0.90
83_S	87_A	0.801	0.90
106_K	109_A	0.799	0.89
85_K	239_T	0.796	0.89
188_K	215_L	0.796	0.89
147_S	169_S	0.794	0.89
262_N	416_K	0.794	0.89
230_K	241_G	0.793	0.89
57_C	196_I	0.787	0.89
388_G	412_R	0.787	0.89
33_P	66_H	0.787	0.89
364_V	375_A	0.786	0.89
40_F	51_H	0.785	0.89
34_I	194_L	0.785	0.89
40_F	70_A	0.781	0.88
360_M	394_P	0.781	0.88
341_E	344_A	0.780	0.88
133_M	142_I	0.779	0.88
42_P	101_V	0.779	0.88
289_E	292_N	0.779	0.88
24_A	27_E	0.778	0.88
261_I	297_P	0.773	0.88
258_Q	324_T	0.773	0.88
349_P	352_E	0.772	0.88
152_I	161_L	0.771	0.88
113_D	121_A	0.770	0.88
45_D	103_K	0.768	0.87
341_E	407_R	0.767	0.87
25_L	29_L	0.760	0.87
352_E	422_C	0.759	0.87
382_N	385_T	0.756	0.87
257_Y	305_E	0.755	0.87
109_A	114_F	0.753	0.86
98_Q	101_V	0.752	0.86
150_Q	154_K	0.752	0.86
326_C	330_G	0.751	0.86
19_V	25_L	0.751	0.86
358_D	395_E	0.747	0.86
289_E	295_K	0.747	0.86
55_L	112_L	0.746	0.86
277_F	306_Q	0.745	0.86
44_A	241_G	0.745	0.86
231_A	266_A	0.744	0.86
294_G	297_P	0.743	0.86
21_D	28_R	0.743	0.86
245_W	248_P	0.732	0.85
257_Y	261_I	0.732	0.85
286_L	289_E	0.730	0.85
140_R	145_H	0.727	0.84
181_Y	185_C	0.726	0.84
273_K	284_N	0.722	0.84
51_H	239_T	0.722	0.84
78_L	97_V	0.721	0.84
157_V	176_N	0.719	0.84
331_S	334_A	0.718	0.84
329_S	332_L	0.717	0.84
155_E	158_K	0.717	0.84
187_N	212_T	0.716	0.84
36_L	194_L	0.716	0.84
90_K	96_T	0.715	0.83
143_G	174_S	0.715	0.83
62_Q	113_D	0.713	0.83
15_L	56_L	0.713	0.83
58_L	70_A	0.712	0.83
144_K	171_T	0.710	0.83
230_K	259_F	0.708	0.83
111_F	256_F	0.705	0.83
381_S	413_R	0.705	0.83
53_V	274_F	0.704	0.83
51_H	55_L	0.703	0.82
309_R	315_E	0.702	0.82
107_Q	247_D	0.698	0.82
280_I	283_I	0.694	0.82
289_E	302_V	0.693	0.82
91_L	171_T	0.692	0.81
91_L	140_R	0.691	0.81
38_C	47_L	0.691	0.81
257_Y	324_T	0.691	0.81
367_E	370_P	0.690	0.81
297_P	300_Q	0.690	0.81
387_N	409_T	0.689	0.81
240_E	243_A	0.688	0.81
321_K	324_T	0.688	0.81
136_L	140_R	0.687	0.81
276_T	302_V	0.687	0.81
130_F	135_V	0.686	0.81
17_A	21_D	0.685	0.81
49_L	259_F	0.682	0.81
146_F	177_L	0.681	0.80
109_A	123_A	0.679	0.80
286_L	299_A	0.679	0.80
146_F	180_G	0.678	0.80
40_F	44_A	0.678	0.80
232_D	264_A	0.675	0.80
24_A	219_Q	0.674	0.80
325_E	329_S	0.673	0.80
408_F	422_C	0.671	0.79
147_S	150_Q	0.671	0.79
268_V	299_A	0.671	0.79
301_Y	329_S	0.670	0.79
85_K	159_Q	0.669	0.79
52_L	275_F	0.668	0.79
207_S	210_D	0.668	0.79
330_G	333_S	0.667	0.79
359_L	363_L	0.666	0.79
148_V	168_I	0.665	0.79
52_L	310_L	0.663	0.79
148_V	173_F	0.660	0.78
392_S	396_Y	0.658	0.78
386_I	398_F	0.657	0.78
210_D	214_R	0.657	0.78
295_K	299_A	0.656	0.78
347_G	350_M	0.655	0.78
105_R	114_F	0.654	0.78
54_P	196_I	0.653	0.78
295_K	298_R	0.651	0.77
272_L	299_A	0.650	0.77
372_R	376_R	0.650	0.77
181_Y	215_L	0.648	0.77
230_K	271_F	0.648	0.77
133_M	137_T	0.646	0.77
256_F	312_H	0.646	0.77
97_V	100_W	0.646	0.77
234_T	239_T	0.645	0.77
93_T	97_V	0.643	0.77
227_L	240_E	0.643	0.77
231_A	263_T	0.642	0.76
68_P	120_S	0.641	0.76
227_L	247_D	0.638	0.76
138_F	142_I	0.637	0.76
170_F	174_S	0.636	0.76
42_P	48_H	0.635	0.76
49_L	307_V	0.634	0.76
49_L	230_K	0.634	0.76
358_D	379_I	0.633	0.75
347_G	351_V	0.632	0.75
262_N	328_F	0.631	0.75
373_G	376_R	0.630	0.75
88_E	144_K	0.628	0.75
87_A	240_E	0.628	0.75
239_T	242_G	0.628	0.75
36_L	196_I	0.628	0.75
83_S	156_A	0.627	0.75
267_D	271_F	0.626	0.75
30_A	33_P	0.625	0.74
202_W	224_T	0.622	0.74
376_R	394_P	0.621	0.74
60_R	277_F	0.621	0.74
348_V	390_K	0.619	0.74
379_I	394_P	0.619	0.74
379_I	384_I	0.617	0.74
350_M	422_C	0.617	0.74
206_T	209_I	0.616	0.73
138_F	178_L	0.616	0.73
18_Q	24_A	0.615	0.73
176_N	180_G	0.614	0.73
231_A	264_A	0.613	0.73
361_Q	364_V	0.612	0.73
51_H	103_K	0.612	0.73
151_M	176_N	0.611	0.73
33_P	67_K	0.611	0.73
358_D	397_F	0.609	0.73
59_K	108_V	0.608	0.72
272_L	283_I	0.606	0.72
28_R	221_F	0.605	0.72
263_T	271_F	0.605	0.72
373_G	380_A	0.600	0.71
59_K	62_Q	0.600	0.71
333_S	389_E	0.599	0.71
151_M	170_F	0.599	0.71
110_P	247_D	0.599	0.71
232_D	242_G	0.599	0.71
326_C	329_S	0.598	0.71
268_V	287_E	0.597	0.71
326_C	332_L	0.597	0.71
20_T	28_R	0.596	0.71
324_T	416_K	0.596	0.71
77_G	97_V	0.596	0.71
24_A	221_F	0.595	0.71
255_K	345_Q	0.595	0.71
151_M	157_V	0.593	0.71
389_E	396_Y	0.593	0.71
353_M	421_I	0.593	0.71
248_P	252_S	0.592	0.70
156_A	176_N	0.592	0.70
106_K	110_P	0.592	0.70
258_Q	416_K	0.591	0.70
49_L	274_F	0.591	0.70
260_W	308_T	0.591	0.70
278_M	286_L	0.590	0.70
78_L	92_N	0.589	0.70
51_H	225_V	0.588	0.70
378_T	384_I	0.587	0.70
49_L	111_F	0.586	0.70
291_K	354_E	0.585	0.70
86_A	90_K	0.581	0.69
356_G	399_K	0.581	0.69
85_K	90_K	0.579	0.69
9_Q	64_A	0.579	0.69
363_L	375_A	0.578	0.69
153_N	244_V	0.578	0.69
258_Q	261_I	0.578	0.69
56_L	60_R	0.575	0.68
110_P	248_P	0.575	0.68
260_W	271_F	0.574	0.68
78_L	131_G	0.573	0.68
49_L	275_F	0.573	0.68
369_Q	411_L	0.573	0.68
127_Y	130_F	0.573	0.68
234_T	241_G	0.572	0.68
355_K	400_E	0.572	0.68
290_D	298_R	0.570	0.68
170_F	173_F	0.569	0.67
20_T	209_I	0.569	0.67
203_G	206_T	0.569	0.67
148_V	151_M	0.568	0.67
53_V	57_C	0.568	0.67
347_G	422_C	0.567	0.67
54_P	83_S	0.567	0.67
276_T	310_L	0.566	0.67
368_L	413_R	0.566	0.67
180_G	211_L	0.565	0.67
342_Q	345_Q	0.565	0.67
49_L	256_F	0.565	0.67
320_A	324_T	0.564	0.67
13_R	280_I	0.563	0.67
228_I	259_F	0.562	0.66
40_F	108_V	0.562	0.66
309_R	318_Q	0.561	0.66
150_Q	210_D	0.560	0.66
362_A	409_T	0.559	0.66
341_E	345_Q	0.559	0.66
70_A	112_L	0.557	0.66
23_E	26_A	0.554	0.65
349_P	353_M	0.553	0.65
254_Y	328_F	0.551	0.65
18_Q	28_R	0.547	0.64
196_I	225_V	0.547	0.64
290_D	293_S	0.546	0.64
77_G	101_V	0.546	0.64
170_F	177_L	0.546	0.64
48_H	77_G	0.545	0.64
51_H	59_K	0.544	0.64
55_L	70_A	0.543	0.64
51_H	271_F	0.543	0.64
328_F	333_S	0.543	0.64
72_V	101_V	0.541	0.64
375_A	379_I	0.541	0.64
51_H	104_I	0.539	0.63
307_V	311_V	0.538	0.63
288_E	293_S	0.537	0.63
354_E	357_A	0.536	0.63
389_E	392_S	0.535	0.63
18_Q	29_L	0.534	0.63
293_S	300_Q	0.534	0.63
343_L	347_G	0.534	0.63
47_L	70_A	0.530	0.62
36_L	54_P	0.530	0.62
90_K	240_E	0.529	0.62
92_N	97_V	0.529	0.62
404_L	407_R	0.528	0.62
370_P	373_G	0.528	0.62
9_Q	280_I	0.528	0.62
356_G	400_E	0.527	0.62
409_T	421_I	0.526	0.61
275_F	310_L	0.523	0.61
209_I	220_V	0.523	0.61
378_T	417_N	0.522	0.61
88_E	171_T	0.522	0.61
259_F	263_T	0.522	0.61
103_K	106_K	0.521	0.61
383_A	403_R	0.520	0.61
61_F	196_I	0.518	0.60
239_T	256_F	0.518	0.60
98_Q	125_N	0.517	0.60
361_Q	395_E	0.513	0.60
173_F	386_I	0.512	0.59
18_Q	199_S	0.512	0.59
108_V	125_N	0.510	0.59
133_M	178_L	0.510	0.59
132_N	137_T	0.510	0.59
212_T	216_H	0.510	0.59
35_A	187_N	0.509	0.59
330_G	334_A	0.508	0.59
33_P	120_S	0.508	0.59
254_Y	324_T	0.507	0.59
269_Y	283_I	0.507	0.59
40_F	146_F	0.506	0.58
19_V	222_G	0.505	0.58
149_N	205_I	0.505	0.58
400_E	403_R	0.504	0.58
156_A	159_Q	0.503	0.58
275_F	307_V	0.502	0.58
29_L	66_H	0.501	0.58
38_C	55_L	0.501	0.58
254_Y	258_Q	0.500	0.58

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4oudA	2	0.967	100	0.241	Contact Map
2ts1A	2	0.7476	100	0.248	Contact Map
1jilA	2	0.7594	100	0.248	Contact Map
2janA	2	0.9788	100	0.254	Contact Map
1h3fA	2	0.8892	100	0.349	Contact Map
1y42X	2	0.75	100	0.386	Contact Map
2pidA	2	0.7288	100	0.436	Contact Map
2yxnA	2	0.7594	100	0.442	Contact Map
3p0jA	1	0.9175	100	0.564	Contact Map
3hv0A	2	0.7193	100	0.581	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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