GREMLIN Database
CSDE - Sulfur acceptor protein CsdE
UniProt: P0AGF2 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG13083
Length: 147 (129)
Sequences: 1890 (1065)
Seq/√Len: 93.7

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
102_K106_E3.8941.00
82_D89_R3.6471.00
105_A109_A3.6331.00
117_D122_R3.1991.00
53_A56_K2.6521.00
78_H101_G2.5021.00
78_H100_E2.3711.00
48_P51_L2.3201.00
16_T102_K2.2331.00
57_E64_R2.1861.00
23_T97_T2.1531.00
51_L68_G2.0891.00
20_L97_T1.9521.00
51_L80_F1.8951.00
103_T106_E1.8651.00
99_V140_I1.7881.00
21_R118_E1.7831.00
36_Q39_M1.7681.00
70_T73_E1.7581.00
49_D52_K1.7151.00
37_L94_V1.7141.00
139_A143_A1.6921.00
69_Y143_A1.6851.00
62_E128_S1.6061.00
70_T80_F1.5951.00
18_E22_N1.5921.00
71_V104_A1.5651.00
25_A118_E1.5101.00
54_Q59_A1.4901.00
81_G92_L1.4851.00
38_I41_G1.4661.00
63_N85_G1.4541.00
98_A115_L1.4501.00
47_L80_F1.4361.00
17_A98_A1.4140.99
99_V112_P1.3990.99
69_Y79_F1.3960.99
30_W124_Q1.3850.99
52_K82_D1.3580.99
47_L52_K1.3530.99
98_A110_Q1.3520.99
73_E78_H1.3010.99
27_L32_D1.2670.99
64_R84_E1.2500.99
79_F107_L1.2420.99
138_E142_A1.2390.99
79_F140_I1.2370.98
47_L51_L1.2300.98
14_T113_L1.2270.98
32_D35_R1.2110.98
112_P137_S1.1760.98
56_K69_Y1.1740.98
37_L42_K1.1740.98
30_W34_Y1.1720.98
104_A108_Q1.1610.98
88_V91_L1.1250.97
48_P80_F1.1200.97
87_I124_Q1.1070.97
17_A58_I1.1060.97
92_L136_L1.0900.97
68_G80_F1.0640.96
60_G83_S1.0510.96
34_Y124_Q1.0460.96
81_G96_L1.0460.96
77_M104_A1.0440.96
51_L56_K1.0410.96
35_R86_R1.0320.95
73_E76_K1.0160.95
86_R89_R1.0030.95
95_L133_L0.9960.94
36_Q40_L0.9950.94
18_E113_L0.9890.94
88_V135_A0.9880.94
14_T18_E0.9440.93
24_F119_L0.9410.93
139_A142_A0.9400.93
110_Q115_L0.9390.92
67_L79_F0.9360.92
70_T78_H0.9160.92
58_I139_A0.9090.91
76_K103_T0.8970.91
45_P80_F0.8970.91
56_K68_G0.8910.90
23_T36_Q0.8850.90
69_Y77_M0.8800.90
95_L140_I0.8700.89
47_L68_G0.8700.89
54_Q57_E0.8640.89
30_W135_A0.8560.89
21_R25_A0.8520.88
65_V93_A0.8320.87
71_V107_L0.8250.87
17_A110_Q0.8240.87
26_P36_Q0.8150.86
34_Y38_I0.8080.85
126_S143_A0.8020.85
106_E109_A0.7860.84
71_V74_N0.7820.84
24_F27_L0.7780.83
91_L133_L0.7700.83
34_Y87_I0.7650.82
65_V92_L0.7480.81
28_T39_M0.7420.80
104_A107_L0.7390.80
102_K110_Q0.7370.80
62_E86_R0.7110.77
71_V75_G0.7060.77
23_T27_L0.7020.76
35_R39_M0.7010.76
62_E127_A0.7000.76
99_V110_Q0.6970.76
75_G105_A0.6940.76
34_Y125_L0.6920.75
66_W83_S0.6920.75
44_L90_G0.6870.75
93_A97_T0.6850.75
39_M42_K0.6770.74
27_L36_Q0.6700.73
60_G66_W0.6690.73
31_E35_R0.6630.72
47_L53_A0.6600.72
67_L130_S0.6430.70
38_I85_G0.6280.68
111_S141_I0.6250.68
81_G88_V0.6240.68
79_F89_R0.6240.68
27_L128_S0.6220.67
77_M108_Q0.6190.67
88_V136_L0.6160.67
17_A102_K0.6150.67
125_L132_G0.6140.66
40_L97_T0.6120.66
71_V78_H0.6060.65
24_F56_K0.6060.65
20_L40_L0.6050.65
45_P101_G0.5950.64
138_E141_I0.5950.64
50_E55_A0.5940.64
22_N55_A0.5940.64
115_L118_E0.5930.64
120_G124_Q0.5890.63
34_Y88_V0.5880.63
30_W125_L0.5880.63
24_F130_S0.5840.63
30_W126_S0.5830.62
63_N84_E0.5810.62
46_A89_R0.5800.62
39_M62_E0.5760.62
83_S131_Q0.5760.62
95_L112_P0.5740.61
115_L119_L0.5720.61
37_L64_R0.5720.61
96_L100_E0.5690.61
20_L94_V0.5690.61
48_P53_A0.5650.60
130_S137_S0.5650.60
29_Q32_D0.5620.60
35_R42_K0.5620.60
131_Q134_N0.5620.60
71_V101_G0.5600.59
67_L119_L0.5570.59
35_R62_E0.5570.59
32_D38_I0.5540.59
16_T97_T0.5530.58
65_V135_A0.5510.58
124_Q131_Q0.5510.58
103_T108_Q0.5490.58
24_F97_T0.5490.58
96_L140_I0.5480.58
120_G123_A0.5470.58
128_S131_Q0.5470.58
39_M88_V0.5460.58
28_T128_S0.5450.57
17_A99_V0.5440.57
43_Q115_L0.5420.57
67_L115_L0.5410.57
124_Q133_L0.5400.57
94_V136_L0.5400.57
57_E84_E0.5380.56
122_R130_S0.5360.56
29_Q84_E0.5330.56
55_A73_E0.5310.55
36_Q99_V0.5250.55
113_L117_D0.5240.54
24_F95_L0.5180.54
30_W121_L0.5120.53
30_W128_S0.5110.53
129_R132_G0.5100.53
44_L47_L0.5070.52
92_L110_Q0.5060.52
124_Q137_S0.5050.52
24_F37_L0.5040.52
99_V107_L0.5030.52
67_L139_A0.5000.51
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4lw4C 1 0.9864 100 0.039 Contact Map
3g0mA 1 0.932 100 0.088 Contact Map
1wloA 1 0.8912 100 0.135 Contact Map
3lvlA 1 0.7483 35.3 0.93 Contact Map
4eb5C 1 0.7415 27.4 0.934 Contact Map
2qq4A 5 0.7891 24.1 0.935 Contact Map
2z7eA 5 0.7755 20.6 0.937 Contact Map
1xjsA 1 0.8095 11 0.944 Contact Map
4k51A 1 0.517 10.5 0.945 Contact Map
1su0B 1 0.7415 10.1 0.946 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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