SRP54 - ECOLI - GREMLIN Contacts

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SRP54 - Signal recognition particle protein

UniProt:	P0AGD7	Sequences: MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQIPDNVKSQMDDKVLVRMEAIINSMTMKERAKPEIIKGSRKRRIAAGCGMQVQDVNRLLKQFDDMQRMMKKMKKGGMAKMMRSMKGMMPPGFPGR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG10300
Length:	453 (435)
Sequences:	2879 (1374)
Seq/√Len:	65.9

ECOLI - SRP54
BACSU - SRP54
HALSA - SRP54
SULSO - SRP54

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
152_A	159_F	5.037	1.00
105_M	117_V	4.070	1.00
315_Q	336_E	3.917	1.00
206_K	239_A	3.840	1.00
234_K	238_E	3.675	1.00
146_K	149_E	3.582	1.00
332_N	389_A	3.572	1.00
339_R	377_E	3.470	1.00
178_E	182_K	3.338	1.00
28_K	56_K	3.198	1.00
196_H	228_D	3.197	1.00
203_D	207_Q	3.042	1.00
162_S	174_A	2.964	1.00
237_N	268_K	2.920	1.00
118_G	279_T	2.894	1.00
400_R	404_A	2.830	1.00
342_K	377_E	2.807	1.00
276_G	281_A	2.692	1.00
117_V	188_L	2.686	1.00
335_L	381_N	2.636	1.00
177_K	181_L	2.590	1.00
189_V	212_I	2.526	1.00
409_Q	412_D	2.472	1.00
50_E	264_H	2.468	1.00
118_G	151_L	2.465	1.00
394_I	417_L	2.435	1.00
68_L	304_I	2.421	1.00
158_D	184_Y	2.364	1.00
170_D	174_A	2.342	1.00
172_V	212_I	2.339	1.00
51_F	55_V	2.319	1.00
160_F	174_A	2.298	1.00
135_V	175_A	2.276	1.00
81_E	84_A	2.266	1.00
117_V	134_V	2.265	1.00
386_K	393_I	2.223	1.00
167_K	207_Q	2.213	1.00
334_F	420_F	2.210	1.00
149_E	153_E	2.209	1.00
403_A	413_V	2.159	1.00
167_K	170_D	2.132	1.00
315_Q	318_K	2.109	1.00
122_K	126_E	2.108	1.00
435_M	438_M	2.058	1.00
379_I	413_V	2.038	1.00
134_V	152_A	2.037	1.00
301_L	304_I	2.024	1.00
169_V	211_S	2.017	1.00
124_L	186_V	2.000	1.00
137_A	172_V	1.996	1.00
320_A	324_K	1.990	1.00
84_A	88_E	1.984	1.00
331_L	417_L	1.975	1.00
125_R	156_G	1.943	1.00
125_R	157_V	1.927	1.00
58_K	81_E	1.885	1.00
76_K	80_N	1.869	1.00
313_R	317_E	1.868	1.00
93_L	124_L	1.862	1.00
19_R	26_N	1.858	1.00
216_E	271_K	1.832	1.00
218_L	246_V	1.817	1.00
121_G	157_V	1.810	1.00
58_K	80_N	1.798	1.00
130_K	186_V	1.798	1.00
394_I	402_I	1.791	1.00
66_K	314_A	1.779	1.00
377_E	381_N	1.774	1.00
250_V	273_L	1.771	1.00
131_K	184_Y	1.750	1.00
134_V	188_L	1.742	1.00
133_L	178_E	1.740	1.00
50_E	54_R	1.725	1.00
242_L	268_K	1.704	0.99
53_N	57_E	1.701	0.99
375_R	412_D	1.689	0.99
169_V	207_Q	1.686	0.99
386_K	390_K	1.662	0.99
217_T	240_L	1.646	0.99
139_V	171_I	1.643	0.99
317_E	320_A	1.640	0.99
203_D	206_K	1.630	0.99
54_R	84_A	1.620	0.99
79_R	83_V	1.615	0.99
149_E	161_P	1.611	0.99
123_F	127_K	1.611	0.99
250_V	290_I	1.607	0.99
330_D	389_A	1.588	0.99
176_L	187_L	1.588	0.99
332_N	385_M	1.583	0.99
375_R	408_M	1.566	0.99
218_L	244_G	1.542	0.99
140_Y	171_I	1.539	0.99
209_H	241_P	1.530	0.99
95_L	186_V	1.527	0.99
371_K	374_V	1.522	0.99
58_K	84_A	1.521	0.99
132_V	184_Y	1.508	0.99
135_V	187_L	1.502	0.99
27_V	60_V	1.499	0.99
102_V	189_V	1.499	0.99
90_N	284_P	1.498	0.99
126_E	309_S	1.488	0.99
120_L	246_V	1.486	0.99
361_P	364_V	1.475	0.98
420_F	424_Q	1.472	0.98
208_V	212_I	1.469	0.98
209_H	217_T	1.449	0.98
97_A	101_A	1.444	0.98
123_F	272_F	1.443	0.98
151_L	155_V	1.443	0.98
79_R	292_S	1.421	0.98
327_D	330_D	1.405	0.98
247_L	259_A	1.404	0.98
16_I	30_T	1.394	0.98
289_R	305_E	1.393	0.98
53_N	56_K	1.389	0.98
122_K	280_E	1.385	0.98
399_K	417_L	1.384	0.98
408_M	412_D	1.383	0.98
354_L	357_M	1.378	0.98
155_V	279_T	1.377	0.98
132_V	158_D	1.366	0.97
306_D	353_K	1.365	0.97
177_K	180_K	1.361	0.97
31_L	56_K	1.356	0.97
314_A	318_K	1.356	0.97
151_L	279_T	1.353	0.97
153_E	156_G	1.340	0.97
116_S	274_G	1.339	0.97
54_R	81_E	1.337	0.97
96_A	99_P	1.334	0.97
139_V	168_P	1.334	0.97
221_V	262_I	1.329	0.97
235_A	239_A	1.321	0.97
102_V	176_L	1.313	0.97
96_A	101_A	1.311	0.97
133_L	184_Y	1.294	0.96
206_K	210_A	1.280	0.96
50_E	53_N	1.267	0.96
134_V	159_F	1.265	0.96
14_R	18_G	1.263	0.96
135_V	172_V	1.262	0.96
228_D	231_N	1.260	0.96
101_A	215_V	1.254	0.96
369_D	374_V	1.254	0.96
379_I	416_L	1.252	0.96
312_D	315_Q	1.240	0.95
349_S	352_G	1.239	0.95
433_G	438_M	1.239	0.95
347_M	351_M	1.226	0.95
339_R	381_N	1.226	0.95
196_H	235_A	1.225	0.95
103_V	188_L	1.223	0.95
169_V	208_V	1.221	0.95
116_S	246_V	1.219	0.95
275_V	282_L	1.215	0.95
273_L	290_I	1.213	0.95
13_L	16_I	1.208	0.95
178_E	184_Y	1.206	0.95
173_N	211_S	1.185	0.94
286_H	302_S	1.182	0.94
308_E	313_R	1.181	0.94
396_G	399_K	1.176	0.94
68_L	301_L	1.175	0.94
178_E	181_L	1.174	0.94
346_G	349_S	1.172	0.94
175_A	187_L	1.171	0.94
342_K	374_V	1.163	0.94
172_V	211_S	1.160	0.94
152_A	155_V	1.146	0.93
165_G	170_D	1.142	0.93
102_V	187_L	1.140	0.93
25_D	29_D	1.138	0.93
9_L	12_T	1.136	0.93
152_A	158_D	1.136	0.93
174_A	177_K	1.131	0.93
334_F	338_L	1.128	0.93
317_E	321_S	1.126	0.92
31_L	55_V	1.117	0.92
31_L	52_I	1.116	0.92
95_L	130_K	1.116	0.92
26_N	74_F	1.115	0.92
122_K	125_R	1.112	0.92
216_E	243_T	1.107	0.92
170_D	173_N	1.105	0.92
58_K	63_E	1.105	0.92
104_L	205_I	1.098	0.92
11_R	15_N	1.096	0.91
199_E	203_D	1.093	0.91
318_K	321_S	1.090	0.91
133_L	158_D	1.085	0.91
335_L	377_E	1.085	0.91
8_R	40_E	1.083	0.91
396_G	410_V	1.080	0.91
392_E	421_D	1.080	0.91
335_L	339_R	1.079	0.91
173_N	177_K	1.074	0.91
122_K	279_T	1.070	0.90
15_N	29_D	1.054	0.90
196_H	232_T	1.051	0.90
176_L	212_I	1.043	0.89
122_K	282_L	1.037	0.89
360_I	363_N	1.026	0.88
358_G	362_D	1.025	0.88
339_R	342_K	1.023	0.88
207_Q	211_S	1.020	0.88
166_Q	170_D	1.014	0.88
105_M	246_V	1.005	0.87
122_K	155_V	1.003	0.87
111_A	117_V	1.002	0.87
104_L	189_V	1.001	0.87
228_D	232_T	1.000	0.87
136_S	162_S	0.999	0.87
140_Y	204_E	0.997	0.87
379_I	408_M	0.996	0.87
116_S	282_L	0.986	0.86
31_L	74_F	0.986	0.86
199_E	239_A	0.985	0.86
93_L	218_L	0.983	0.86
259_A	270_I	0.982	0.86
24_E	60_V	0.981	0.86
406_C	409_Q	0.979	0.86
288_D	301_L	0.979	0.86
286_H	289_R	0.978	0.86
150_T	153_E	0.977	0.86
158_D	178_E	0.972	0.86
385_M	389_A	0.960	0.85
214_P	217_T	0.959	0.85
127_K	309_S	0.959	0.85
95_L	101_A	0.953	0.84
371_K	375_R	0.953	0.84
324_K	431_K	0.953	0.84
54_R	264_H	0.951	0.84
392_E	424_Q	0.947	0.84
172_V	176_L	0.944	0.84
241_P	268_K	0.941	0.84
223_A	250_V	0.933	0.83
331_L	393_I	0.931	0.83
136_S	145_I	0.931	0.83
97_A	215_V	0.929	0.83
358_G	364_V	0.929	0.83
372_V	419_Q	0.928	0.83
163_D	166_Q	0.928	0.83
103_V	186_V	0.928	0.83
94_N	215_V	0.927	0.83
379_I	403_A	0.916	0.82
62_H	66_K	0.915	0.82
32_R	36_M	0.910	0.82
201_M	205_I	0.908	0.81
25_D	28_K	0.907	0.81
14_R	19_R	0.903	0.81
346_G	350_L	0.902	0.81
102_V	215_V	0.894	0.80
54_R	57_E	0.891	0.80
338_L	423_M	0.888	0.80
169_V	176_L	0.888	0.80
357_M	360_I	0.884	0.80
23_T	26_N	0.884	0.80
93_L	103_V	0.884	0.80
422_D	425_R	0.882	0.80
125_R	155_V	0.881	0.79
347_M	350_L	0.879	0.79
162_S	166_Q	0.879	0.79
135_V	189_V	0.877	0.79
59_A	77_I	0.875	0.79
289_R	302_S	0.874	0.79
90_N	286_H	0.870	0.79
209_H	242_L	0.868	0.78
130_K	185_D	0.867	0.78
433_G	436_A	0.865	0.78
232_T	235_A	0.863	0.78
125_R	153_E	0.862	0.78
334_F	376_M	0.861	0.78
234_K	237_N	0.852	0.77
30_T	74_F	0.851	0.77
22_L	74_F	0.849	0.77
98_Q	101_A	0.847	0.77
145_I	163_D	0.846	0.77
368_M	374_V	0.844	0.77
250_V	275_V	0.843	0.76
230_A	265_I	0.836	0.76
140_Y	168_P	0.834	0.76
369_D	372_V	0.834	0.76
306_D	309_S	0.832	0.75
291_A	294_I	0.829	0.75
176_L	180_K	0.828	0.75
149_E	159_F	0.823	0.75
123_F	284_P	0.823	0.75
399_K	414_N	0.821	0.75
105_M	116_S	0.821	0.75
27_V	74_F	0.818	0.74
311_V	316_A	0.817	0.74
80_N	301_L	0.816	0.74
105_M	274_G	0.816	0.74
408_M	411_Q	0.810	0.74
22_L	27_V	0.810	0.74
288_D	292_S	0.809	0.73
146_K	163_D	0.808	0.73
235_A	238_E	0.808	0.73
245_V	262_I	0.808	0.73
218_L	271_K	0.804	0.73
304_I	308_E	0.803	0.73
88_E	263_R	0.802	0.73
21_R	63_E	0.802	0.73
121_G	155_V	0.800	0.73
321_S	325_K	0.797	0.72
169_V	212_I	0.795	0.72
348_A	363_N	0.795	0.72
237_N	242_L	0.794	0.72
319_L	323_L	0.792	0.72
137_A	189_V	0.792	0.72
87_G	287_P	0.789	0.72
331_L	420_F	0.788	0.71
104_L	217_T	0.785	0.71
69_T	72_Q	0.782	0.71
176_L	211_S	0.780	0.71
146_K	164_V	0.780	0.71
76_K	308_E	0.779	0.71
136_S	161_P	0.779	0.71
314_A	317_E	0.777	0.70
374_V	381_N	0.774	0.70
72_Q	300_V	0.773	0.70
320_A	323_L	0.773	0.70
166_Q	174_A	0.772	0.70
372_V	375_R	0.770	0.70
315_Q	343_N	0.768	0.69
34_V	74_F	0.768	0.69
118_G	155_V	0.765	0.69
118_G	154_Q	0.763	0.69
145_I	162_S	0.762	0.69
34_V	75_V	0.761	0.69
124_L	128_H	0.760	0.69
149_E	163_D	0.759	0.69
133_L	187_L	0.755	0.68
207_Q	210_A	0.754	0.68
132_V	215_V	0.753	0.68
334_F	426_M	0.751	0.68
342_K	370_D	0.751	0.68
434_G	437_K	0.750	0.68
14_R	17_S	0.749	0.68
13_L	22_L	0.746	0.67
390_K	393_I	0.745	0.67
169_V	172_V	0.744	0.67
221_V	247_L	0.743	0.67
326_G	424_Q	0.742	0.67
219_F	245_V	0.741	0.67
360_I	364_V	0.740	0.67
61_G	64_V	0.740	0.67
210_A	213_N	0.736	0.66
133_L	182_K	0.736	0.66
26_N	29_D	0.731	0.66
386_K	389_A	0.730	0.66
11_R	14_R	0.726	0.65
35_R	48_V	0.726	0.65
412_D	415_R	0.723	0.65
415_R	419_Q	0.722	0.65
154_Q	281_A	0.721	0.65
352_G	361_P	0.721	0.65
270_I	273_L	0.720	0.64
424_Q	428_K	0.719	0.64
374_V	377_E	0.719	0.64
359_Q	362_D	0.719	0.64
41_A	255_R	0.717	0.64
425_R	429_K	0.716	0.64
380_I	388_R	0.714	0.64
139_V	204_E	0.713	0.64
305_E	308_E	0.710	0.63
351_M	354_L	0.708	0.63
31_L	34_V	0.708	0.63
71_G	75_V	0.705	0.63
136_S	159_F	0.704	0.63
146_K	150_T	0.704	0.63
421_D	424_Q	0.704	0.63
300_V	304_I	0.700	0.62
242_L	274_G	0.698	0.62
72_Q	297_M	0.698	0.62
151_L	154_Q	0.694	0.62
111_A	223_A	0.694	0.62
348_A	367_Q	0.688	0.61
109_Q	195_L	0.687	0.61
382_S	405_G	0.686	0.61
65_N	304_I	0.686	0.61
340_Q	344_M	0.685	0.61
188_L	282_L	0.685	0.61
322_K	330_D	0.683	0.60
369_D	375_R	0.682	0.60
27_V	31_L	0.682	0.60
321_S	324_K	0.680	0.60
205_I	217_T	0.680	0.60
406_C	411_Q	0.679	0.60
92_T	128_H	0.675	0.60
395_K	399_K	0.671	0.59
318_K	330_D	0.671	0.59
221_V	391_P	0.671	0.59
152_A	157_V	0.668	0.59
106_A	157_V	0.664	0.58
419_Q	423_M	0.661	0.58
189_V	208_V	0.661	0.58
219_F	232_T	0.661	0.58
350_L	354_L	0.660	0.58
161_P	164_V	0.655	0.57
49_R	53_N	0.654	0.57
146_K	153_E	0.653	0.57
65_N	80_N	0.652	0.57
136_S	335_L	0.652	0.57
134_V	158_D	0.650	0.57
202_M	228_D	0.650	0.57
435_M	439_M	0.649	0.57
132_V	185_D	0.648	0.56
357_M	362_D	0.647	0.56
200_A	203_D	0.646	0.56
160_F	178_E	0.645	0.56
13_L	20_G	0.645	0.56
306_D	310_K	0.642	0.56
56_K	60_V	0.642	0.56
22_L	30_T	0.641	0.56
139_V	162_S	0.641	0.56
338_L	373_L	0.641	0.56
172_V	189_V	0.641	0.56
18_G	23_T	0.639	0.55
85_A	243_T	0.639	0.55
243_T	268_K	0.638	0.55
372_V	412_D	0.638	0.55
164_V	167_K	0.637	0.55
101_A	130_K	0.637	0.55
332_N	381_N	0.636	0.55
417_L	420_F	0.635	0.55
272_F	284_P	0.634	0.55
80_N	304_I	0.634	0.55
372_V	423_M	0.632	0.55
94_N	101_A	0.631	0.54
434_G	439_M	0.629	0.54
419_Q	422_D	0.629	0.54
326_G	431_K	0.629	0.54
393_I	417_L	0.628	0.54
286_H	305_E	0.625	0.54
155_V	159_F	0.622	0.53
106_A	217_T	0.622	0.53
65_N	73_E	0.622	0.53
116_S	275_V	0.621	0.53
34_V	86_M	0.620	0.53
306_D	409_Q	0.620	0.53
275_V	283_E	0.618	0.53
396_G	400_R	0.617	0.53
306_D	349_S	0.617	0.53
401_R	405_G	0.616	0.53
75_V	301_L	0.616	0.53
274_G	400_R	0.615	0.53
213_N	243_T	0.614	0.52
199_E	386_K	0.614	0.52
32_R	49_R	0.613	0.52
346_G	354_L	0.612	0.52
334_F	424_Q	0.612	0.52
134_V	148_L	0.611	0.52
161_P	166_Q	0.611	0.52
344_M	350_L	0.610	0.52
8_R	35_R	0.609	0.52
92_T	127_K	0.607	0.52
13_L	71_G	0.606	0.52
319_L	322_K	0.605	0.51
322_K	333_D	0.605	0.51
421_D	425_R	0.605	0.51
13_L	30_T	0.603	0.51
2_F	325_K	0.599	0.51
202_M	224_M	0.599	0.51
115_T	274_G	0.598	0.51
241_P	358_G	0.598	0.51
298_G	355_P	0.597	0.50
26_N	304_I	0.597	0.50
162_S	171_I	0.596	0.50
62_H	314_A	0.595	0.50
124_L	271_K	0.594	0.50
275_V	306_D	0.594	0.50
162_S	170_D	0.594	0.50
7_D	11_R	0.593	0.50
169_V	245_V	0.591	0.50
27_V	30_T	0.590	0.50
205_I	235_A	0.590	0.50
163_D	249_K	0.590	0.50
334_F	349_S	0.587	0.49
308_E	311_V	0.587	0.49
167_K	175_A	0.587	0.49
162_S	165_G	0.587	0.49
65_N	68_L	0.586	0.49
36_M	39_L	0.585	0.49
136_S	215_V	0.585	0.49
196_H	205_I	0.584	0.49
360_I	366_S	0.582	0.49
4_N	7_D	0.581	0.49
332_N	335_L	0.581	0.49
378_A	408_M	0.581	0.49
77_I	312_D	0.581	0.49
139_V	145_I	0.580	0.48
222_D	249_K	0.580	0.48
346_G	352_G	0.580	0.48
54_R	350_L	0.579	0.48
145_I	249_K	0.579	0.48
62_H	77_I	0.579	0.48
187_L	212_I	0.578	0.48
420_F	427_M	0.578	0.48
149_E	152_A	0.577	0.48
205_I	232_T	0.576	0.48
283_E	290_I	0.576	0.48
55_V	59_A	0.575	0.48
433_G	437_K	0.574	0.48
125_R	154_Q	0.574	0.48
8_R	13_L	0.573	0.48
224_M	253_D	0.573	0.48
10_S	359_Q	0.573	0.48
245_V	268_K	0.572	0.48
55_V	78_V	0.572	0.48
351_M	357_M	0.572	0.48
225_T	229_A	0.571	0.47
327_D	392_E	0.569	0.47
140_Y	201_M	0.569	0.47
105_M	120_L	0.569	0.47
116_S	242_L	0.568	0.47
45_L	49_R	0.568	0.47
410_V	414_N	0.568	0.47
102_V	180_K	0.566	0.47
26_N	71_G	0.566	0.47
136_S	152_A	0.565	0.47
105_M	188_L	0.565	0.47
218_L	406_C	0.564	0.47
334_F	377_E	0.563	0.46
331_L	380_I	0.563	0.46
14_R	26_N	0.562	0.46
96_A	100_P	0.561	0.46
301_L	308_E	0.561	0.46
104_L	424_Q	0.560	0.46
91_Q	263_R	0.560	0.46
12_T	15_N	0.560	0.46
372_V	376_M	0.559	0.46
341_M	354_L	0.559	0.46
372_V	415_R	0.558	0.46
255_R	291_A	0.558	0.46
181_L	238_E	0.558	0.46
155_V	158_D	0.558	0.46
366_S	369_D	0.557	0.46
15_N	20_G	0.557	0.46
26_N	34_V	0.557	0.46
237_N	240_L	0.557	0.46
208_V	211_S	0.557	0.46
122_K	154_Q	0.556	0.46
68_L	72_Q	0.554	0.45
337_Q	341_M	0.554	0.45
2_F	6_T	0.554	0.45
101_A	136_S	0.553	0.45
348_A	352_G	0.553	0.45
137_A	381_N	0.553	0.45
219_F	242_L	0.549	0.45
311_V	349_S	0.548	0.45
368_M	372_V	0.548	0.45
109_Q	202_M	0.548	0.45
168_P	208_V	0.547	0.45
37_A	259_A	0.547	0.45
76_K	225_T	0.546	0.44
195_L	228_D	0.545	0.44
55_V	322_K	0.545	0.44
69_T	296_G	0.545	0.44
375_R	424_Q	0.543	0.44
386_K	413_V	0.543	0.44
281_A	284_P	0.543	0.44
197_V	202_M	0.543	0.44
346_G	376_M	0.543	0.44
400_R	411_Q	0.543	0.44
86_M	290_I	0.542	0.44
203_D	210_A	0.542	0.44
237_N	262_I	0.542	0.44
136_S	290_I	0.540	0.44
88_E	91_Q	0.540	0.44
64_V	77_I	0.539	0.44
68_L	151_L	0.538	0.44
169_V	173_N	0.537	0.43
38_L	48_V	0.537	0.43
39_L	55_V	0.536	0.43
49_R	54_R	0.535	0.43
272_F	406_C	0.533	0.43
68_L	73_E	0.533	0.43
189_V	211_S	0.531	0.43
145_I	168_P	0.529	0.43
98_Q	215_V	0.529	0.43
201_M	274_G	0.529	0.43
98_Q	180_K	0.528	0.42
302_S	305_E	0.528	0.42
29_D	62_H	0.528	0.42
369_D	378_A	0.528	0.42
198_D	202_M	0.528	0.42
341_M	376_M	0.527	0.42
205_I	234_K	0.527	0.42
123_F	128_H	0.526	0.42
22_L	26_N	0.526	0.42
187_L	267_G	0.526	0.42
424_Q	431_K	0.526	0.42
136_S	166_Q	0.526	0.42
154_Q	278_K	0.525	0.42
180_K	348_A	0.525	0.42
347_M	363_N	0.525	0.42
318_K	322_K	0.525	0.42
263_R	267_G	0.524	0.42
116_S	266_T	0.524	0.42
131_K	183_F	0.524	0.42
191_T	297_M	0.523	0.42
410_V	428_K	0.523	0.42
134_V	212_I	0.523	0.42
180_K	203_D	0.522	0.42
325_K	428_K	0.521	0.42
331_L	410_V	0.521	0.42
75_V	304_I	0.521	0.42
22_L	64_V	0.520	0.41
137_A	175_A	0.520	0.41
67_S	266_T	0.519	0.41
210_A	385_M	0.519	0.41
39_L	45_L	0.519	0.41
96_A	223_A	0.519	0.41
34_V	274_G	0.518	0.41
173_N	406_C	0.518	0.41
80_N	308_E	0.517	0.41
53_N	105_M	0.517	0.41
357_M	361_P	0.517	0.41
176_L	208_V	0.517	0.41
28_K	237_N	0.516	0.41
75_V	297_M	0.515	0.41
223_A	369_D	0.515	0.41
145_I	161_P	0.515	0.41
86_M	105_M	0.514	0.41
22_L	78_V	0.514	0.41
91_Q	94_N	0.514	0.41
177_K	210_A	0.513	0.41
109_Q	224_M	0.512	0.41
34_V	55_V	0.511	0.40
219_F	258_A	0.510	0.40
65_N	69_T	0.510	0.40
154_Q	279_T	0.508	0.40
17_S	123_F	0.507	0.40
64_V	67_S	0.507	0.40
205_I	274_G	0.507	0.40
11_R	63_E	0.506	0.40
17_S	359_Q	0.505	0.40
54_R	58_K	0.505	0.40
111_A	343_N	0.505	0.40
36_M	40_E	0.504	0.40
19_R	58_K	0.504	0.40
256_G	266_T	0.504	0.40
392_E	395_K	0.503	0.40
17_S	187_L	0.503	0.40
86_M	223_A	0.503	0.40
311_V	315_Q	0.501	0.39
165_G	174_A	0.501	0.39
180_K	215_V	0.500	0.39
4_N	334_F	0.500	0.39

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2ffhA	4	0.8985	100	0.388	Contact Map
2v3cC	1	0.8852	100	0.397	Contact Map
2xxaA	1	0.9095	100	0.398	Contact Map
2j37W	1	0.9691	100	0.414	Contact Map
3dm5A	4	0.9139	100	0.444	Contact Map
3kl4A	1	0.8985	100	0.45	Contact Map
4c7oA	1	0.6534	100	0.618	Contact Map
1ls1A	1	0.638	100	0.631	Contact Map
2yhsA	1	0.6446	100	0.657	Contact Map
2og2A	1	0.6203	100	0.663	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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