UGPB - ECOLI - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

UGPB - sn-glycerol-3-phosphate-binding periplasmic protein UgpB

UniProt:	P0AG80	Sequences: MKPLHYTASALALGLALMGNAQAVTTIPFWHSMEGELGKEVDSLAQRFNAENPDYKIVPTYKGNYEQNLSAGIAAFRTGNAPAILQVYEVGTATMMASKAIKPVYDVFKEAGIQFDESQFVPTVSGYYSDSKTGHLLSQPFNSSTPVLYYNKDAFKKAGLDPEQPPKTWQDLADYAAKLKASGMKCGYASGWQGWIQLENFSAWNGLPFASKNNGFDGTDAVLEFNKPEQVKHIAMLEEMNKKGDFSYVGRKDESTEKFYNGDCAMTTASSGSLANIREYAKFNYGVGMMPYDADAKDAPQNAIIGGASLWVMQGKDKETYTGVAKFLDFLAKPENAAEWHQKTGYLPITKAAYDLTREQGFYEKNPGADTATRQMLNKPPLPFTKGLRLGNMPQIRVIVDEELESVWTGKKTPQQALDTAVERGNQLLRRFEKSTKS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG11047
Length:	438 (392)
Sequences:	28979 (22835)
Seq/√Len:	1153.3

ECOLI - UGPB YCJN MALE YNJB YDCS POTF POTD THIB
BACSU - YESO YURO ARAN CYCB MSME MDXE YTCQ LIPO
HALSA - Q9HHQ8 Q9HP00 Q9HR87 Q9HNZ3 Q9HMT5 Q9HR04
SULSO - Q97YY1 Q97ZC3 Q97UZ1 Q97VC2 Q97UF5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
26_T	58_V	3.753	1.00
413_T	416_Q	3.528	1.00
102_K	321_Y	3.352	1.00
153_D	284_N	3.260	1.00
231_V	415_Q	3.221	1.00
238_E	242_K	3.215	1.00
26_T	56_K	2.879	1.00
152_K	286_G	2.802	1.00
235_A	239_E	2.750	1.00
103_P	135_H	2.748	1.00
28_P	58_V	2.661	1.00
52_N	326_K	2.645	1.00
152_K	156_K	2.503	1.00
177_A	243_K	2.498	1.00
42_D	46_Q	2.497	1.00
173_A	239_E	2.478	1.00
150_Y	286_G	2.394	1.00
168_T	171_D	2.371	1.00
415_Q	419_D	2.369	1.00
55_Y	323_G	2.362	1.00
239_E	243_K	2.351	1.00
47_R	50_A	2.324	1.00
48_F	326_K	2.248	1.00
67_Q	70_S	2.235	1.00
419_D	423_E	2.187	1.00
155_F	266_M	2.164	1.00
49_N	56_K	2.163	1.00
326_K	329_D	2.151	1.00
129_S	136_L	2.117	1.00
228_P	232_K	2.113	1.00
226_N	419_D	2.106	1.00
422_V	426_N	2.100	1.00
174_D	178_K	2.087	1.00
320_T	323_G	2.073	1.00
122_P	126_G	2.042	1.00
105_Y	135_H	2.036	1.00
333_K	336_N	2.032	1.00
24_V	56_K	2.004	1.00
177_A	181_A	1.999	1.00
28_P	60_T	1.970	1.00
412_K	420_T	1.968	1.00
160_L	175_Y	1.968	1.00
10_A	13_L	1.961	1.00
46_Q	50_A	1.945	1.00
30_W	75_A	1.936	1.00
370_D	374_R	1.931	1.00
119_Q	352_A	1.929	1.00
47_R	330_F	1.914	1.00
153_D	157_K	1.895	1.00
171_D	174_D	1.883	1.00
43_S	46_Q	1.860	1.00
406_S	411_K	1.828	1.00
83_A	320_T	1.827	1.00
235_A	414_P	1.805	1.00
232_K	235_A	1.779	1.00
101_I	311_W	1.764	1.00
47_R	51_E	1.758	1.00
178_K	182_S	1.738	1.00
251_R	254_E	1.732	1.00
423_E	427_Q	1.732	1.00
11_L	14_G	1.722	1.00
126_G	129_S	1.700	1.00
174_D	177_A	1.694	1.00
107_V	325_A	1.678	1.00
85_L	313_M	1.674	1.00
406_S	412_K	1.665	1.00
416_Q	420_T	1.662	1.00
322_T	326_K	1.658	1.00
407_V	417_A	1.634	1.00
338_A	342_Q	1.631	1.00
235_A	415_Q	1.604	1.00
138_S	309_S	1.591	1.00
231_V	414_P	1.584	1.00
316_K	320_T	1.583	1.00
170_Q	173_A	1.576	1.00
46_Q	49_N	1.562	1.00
45_A	49_N	1.559	1.00
189_A	264_C	1.545	1.00
148_L	288_G	1.537	1.00
420_T	424_R	1.535	1.00
25_T	323_G	1.534	1.00
47_R	339_E	1.521	1.00
128_Y	309_S	1.516	1.00
150_Y	288_G	1.496	1.00
45_A	327_F	1.489	1.00
49_N	53_P	1.478	1.00
398_V	402_E	1.476	1.00
419_D	422_V	1.475	1.00
416_Q	419_D	1.473	1.00
231_V	235_A	1.467	1.00
76_F	81_A	1.460	1.00
173_A	177_A	1.449	1.00
166_P	171_D	1.440	1.00
173_A	240_M	1.437	1.00
399_I	424_R	1.437	1.00
152_K	284_N	1.435	1.00
170_Q	174_D	1.428	1.00
316_K	321_Y	1.417	1.00
103_P	106_D	1.413	1.00
154_A	179_L	1.398	1.00
238_E	407_V	1.397	1.00
312_V	328_L	1.387	1.00
154_A	265_A	1.380	1.00
420_T	423_E	1.371	1.00
48_F	55_Y	1.370	1.00
226_N	422_V	1.368	1.00
38_G	42_D	1.365	1.00
374_R	377_L	1.359	1.00
179_L	265_A	1.356	1.00
102_K	314_Q	1.351	1.00
258_K	263_D	1.345	1.00
167_K	171_D	1.345	1.00
24_V	54_D	1.342	1.00
236_M	240_M	1.342	1.00
173_A	243_K	1.327	1.00
259_F	285_Y	1.327	1.00
403_E	412_K	1.325	1.00
71_A	75_A	1.324	1.00
407_V	414_P	1.322	1.00
334_P	338_A	1.319	1.00
43_S	47_R	1.314	1.00
336_N	339_E	1.309	1.00
48_F	330_F	1.306	1.00
96_M	137_L	1.299	1.00
403_E	420_T	1.284	1.00
25_T	320_T	1.284	1.00
211_S	222_V	1.281	1.00
180_K	187_G	1.279	1.00
31_H	59_P	1.277	1.00
176_A	266_M	1.276	1.00
84_I	328_L	1.271	1.00
158_A	179_L	1.269	1.00
236_M	239_E	1.257	1.00
45_A	59_P	1.245	1.00
55_Y	326_K	1.234	1.00
7_T	13_L	1.230	1.00
229_E	232_K	1.229	1.00
87_V	311_W	1.219	1.00
148_L	266_M	1.218	1.00
211_S	220_D	1.217	1.00
128_Y	136_L	1.215	1.00
48_F	327_F	1.207	1.00
48_F	52_N	1.200	1.00
39_K	42_D	1.192	1.00
423_E	426_N	1.191	1.00
412_K	417_A	1.191	1.00
111_A	329_D	1.188	1.00
147_V	287_V	1.181	1.00
83_A	316_K	1.179	1.00
202_S	207_L	1.177	1.00
99_K	314_Q	1.170	1.00
316_K	324_V	1.170	1.00
173_A	236_M	1.166	1.00
63_G	67_Q	1.165	1.00
403_E	406_S	1.163	1.00
170_Q	294_A	1.155	1.00
330_F	336_N	1.151	1.00
160_L	178_K	1.147	1.00
424_R	427_Q	1.145	1.00
49_N	52_N	1.141	1.00
239_E	242_K	1.139	1.00
371_T	374_R	1.135	1.00
180_K	245_D	1.133	1.00
323_G	326_K	1.133	1.00
7_T	10_A	1.131	1.00
8_A	12_A	1.130	1.00
175_Y	178_K	1.127	1.00
102_K	316_K	1.125	1.00
155_F	160_L	1.123	1.00
211_S	219_T	1.122	1.00
177_A	245_D	1.115	1.00
6_Y	10_A	1.109	1.00
161_D	165_P	1.107	1.00
106_D	109_K	1.099	1.00
154_A	158_A	1.098	1.00
403_E	421_A	1.092	1.00
96_M	132_K	1.089	1.00
339_E	343_K	1.083	1.00
327_F	331_L	1.080	1.00
151_N	283_F	1.079	1.00
7_T	11_L	1.076	1.00
257_E	261_N	1.074	1.00
84_I	324_V	1.074	1.00
312_V	325_A	1.060	1.00
327_F	330_F	1.056	1.00
402_E	424_R	1.054	1.00
325_A	329_D	1.053	1.00
396_I	425_G	1.051	1.00
39_K	43_S	1.050	1.00
172_L	176_A	1.049	1.00
374_R	378_N	1.049	1.00
153_D	283_F	1.047	1.00
314_Q	321_Y	1.037	1.00
156_K	161_D	1.033	1.00
81_A	313_M	1.030	1.00
48_F	323_G	1.030	1.00
406_S	420_T	1.030	1.00
29_F	310_L	1.028	1.00
27_I	327_F	1.027	1.00
109_K	117_E	1.026	1.00
155_F	175_Y	1.026	1.00
151_N	154_A	1.025	1.00
312_V	324_V	1.020	1.00
313_M	316_K	1.017	1.00
231_V	418_L	1.014	1.00
8_A	14_G	1.012	1.00
72_G	85_L	1.006	1.00
160_L	179_L	1.005	1.00
57_I	327_F	1.004	1.00
125_S	129_S	1.004	1.00
184_M	187_G	1.003	1.00
6_Y	13_L	1.000	1.00
9_S	12_A	1.000	1.00
399_I	402_E	0.996	1.00
352_A	355_D	0.990	1.00
12_A	15_L	0.988	1.00
412_K	416_Q	0.988	1.00
293_D	296_A	0.985	1.00
11_L	15_L	0.981	1.00
76_F	100_A	0.980	1.00
339_E	342_Q	0.979	1.00
223_L	426_N	0.976	1.00
254_E	257_E	0.975	1.00
238_E	414_P	0.972	1.00
154_A	157_K	0.971	1.00
211_S	221_A	0.964	1.00
85_L	311_W	0.962	1.00
172_L	266_M	0.959	1.00
276_N	279_E	0.957	1.00
179_L	184_M	0.953	1.00
45_A	57_I	0.949	1.00
138_S	311_W	0.948	1.00
14_G	17_L	0.947	1.00
321_Y	325_A	0.944	1.00
84_I	327_F	0.941	1.00
334_P	352_A	0.940	1.00
350_T	353_A	0.939	1.00
6_Y	12_A	0.933	1.00
292_Y	295_D	0.932	1.00
178_K	181_A	0.932	1.00
205_N	232_K	0.930	1.00
232_K	236_M	0.929	1.00
175_Y	266_M	0.928	1.00
158_A	182_S	0.922	1.00
395_Q	398_V	0.922	1.00
125_S	136_L	0.915	1.00
30_W	82_P	0.915	1.00
79_G	315_G	0.910	1.00
373_T	377_L	0.910	1.00
235_A	238_E	0.909	1.00
179_L	183_G	0.907	1.00
258_K	264_C	0.904	1.00
228_P	231_V	0.903	1.00
44_L	47_R	0.902	1.00
225_F	230_Q	0.901	1.00
234_I	407_V	0.899	1.00
172_L	188_Y	0.898	1.00
147_V	372_A	0.895	1.00
15_L	18_M	0.895	1.00
417_A	421_A	0.892	1.00
122_P	351_K	0.891	1.00
119_Q	350_T	0.889	1.00
10_A	14_G	0.887	1.00
117_E	125_S	0.883	1.00
25_T	54_D	0.881	1.00
402_E	406_S	0.880	1.00
269_A	273_S	0.876	1.00
366_N	370_D	0.873	1.00
71_A	74_A	0.873	1.00
335_E	338_A	0.867	1.00
69_L	91_G	0.867	1.00
413_T	417_A	0.866	1.00
418_L	422_V	0.862	1.00
105_Y	109_K	0.861	1.00
403_E	424_R	0.859	1.00
243_K	246_F	0.857	1.00
27_I	323_G	0.856	1.00
47_R	335_E	0.855	1.00
49_N	54_D	0.853	1.00
102_K	313_M	0.853	1.00
18_M	22_Q	0.852	1.00
158_A	178_K	0.852	1.00
312_V	316_K	0.850	1.00
74_A	78_T	0.848	1.00
185_K	263_D	0.847	1.00
184_M	263_D	0.847	1.00
7_T	14_G	0.845	1.00
30_W	62_K	0.845	1.00
153_D	156_K	0.844	1.00
8_A	11_L	0.843	1.00
96_M	101_I	0.841	1.00
399_I	403_E	0.837	1.00
40_E	43_S	0.836	1.00
367_P	370_D	0.834	1.00
43_S	339_E	0.829	1.00
107_V	322_T	0.829	1.00
120_F	332_A	0.827	1.00
43_S	343_K	0.827	1.00
9_S	14_G	0.825	1.00
29_F	84_I	0.823	1.00
186_C	248_Y	0.822	1.00
176_A	245_D	0.822	1.00
51_E	335_E	0.821	1.00
399_I	421_A	0.821	1.00
156_K	284_N	0.817	1.00
85_L	101_I	0.814	1.00
105_Y	136_L	0.811	1.00
223_L	422_V	0.811	1.00
247_S	250_G	0.810	1.00
27_I	320_T	0.807	1.00
9_S	13_L	0.806	1.00
108_F	136_L	0.806	1.00
335_E	339_E	0.805	1.00
155_F	179_L	0.804	1.00
105_Y	129_S	0.802	1.00
160_L	166_P	0.798	1.00
165_P	288_G	0.796	1.00
51_E	333_K	0.795	1.00
141_F	310_L	0.795	1.00
324_V	328_L	0.793	1.00
101_I	137_L	0.791	1.00
338_A	353_A	0.789	1.00
202_S	230_Q	0.789	1.00
403_E	417_A	0.788	1.00
75_A	80_N	0.787	1.00
6_Y	9_S	0.787	1.00
106_D	325_A	0.783	1.00
62_K	71_A	0.782	1.00
117_E	129_S	0.782	1.00
121_V	351_K	0.781	1.00
149_Y	269_A	0.778	1.00
102_K	312_V	0.776	1.00
180_K	183_G	0.775	1.00
154_A	184_M	0.771	1.00
54_D	326_K	0.770	1.00
240_M	245_D	0.768	1.00
224_E	227_K	0.768	1.00
418_L	421_A	0.761	1.00
49_N	57_I	0.759	1.00
338_A	356_L	0.758	1.00
102_K	106_D	0.757	1.00
161_D	167_K	0.755	1.00
102_K	107_V	0.755	1.00
234_I	417_A	0.752	1.00
20_N	23_A	0.751	1.00
212_K	220_D	0.749	1.00
353_A	356_L	0.748	1.00
244_G	248_Y	0.743	1.00
176_A	187_G	0.740	1.00
398_V	401_D	0.736	1.00
370_D	373_T	0.735	1.00
176_A	180_K	0.734	1.00
179_L	185_K	0.732	1.00
165_P	175_Y	0.731	1.00
227_K	230_Q	0.726	1.00
158_A	183_G	0.726	1.00
44_L	330_F	0.726	1.00
18_M	21_A	0.726	1.00
246_F	249_V	0.726	1.00
150_Y	165_P	0.725	1.00
27_I	324_V	0.724	1.00
257_E	260_Y	0.722	1.00
51_E	330_F	0.722	1.00
103_P	137_L	0.720	1.00
47_R	336_N	0.720	1.00
111_A	325_A	0.719	1.00
158_A	175_Y	0.718	1.00
393_M	397_R	0.716	1.00
400_V	421_A	0.712	1.00
253_D	256_T	0.712	1.00
161_D	175_Y	0.711	1.00
322_T	325_A	0.711	1.00
208_P	212_K	0.710	1.00
234_I	418_L	0.707	1.00
173_A	245_D	0.706	1.00
402_E	405_E	0.700	1.00
84_I	310_L	0.699	1.00
321_Y	324_V	0.699	1.00
107_V	111_A	0.699	1.00
129_S	134_G	0.693	1.00
180_K	244_G	0.691	1.00
70_S	74_A	0.687	1.00
203_A	208_P	0.686	1.00
122_P	125_S	0.686	1.00
173_A	176_A	0.685	1.00
198_L	202_S	0.685	1.00
292_Y	296_A	0.681	1.00
165_P	171_D	0.680	1.00
25_T	55_Y	0.676	1.00
207_L	230_Q	0.676	1.00
279_E	282_K	0.675	1.00
206_G	210_A	0.674	1.00
76_F	313_M	0.671	1.00
157_K	182_S	0.665	1.00
169_W	236_M	0.664	1.00
294_A	297_K	0.663	1.00
351_K	355_D	0.663	1.00
227_K	231_V	0.660	1.00
158_A	265_A	0.658	1.00
179_L	266_M	0.658	1.00
392_N	395_Q	0.656	1.00
44_L	336_N	0.654	1.00
149_Y	287_V	0.652	1.00
167_K	292_Y	0.650	1.00
157_K	185_K	0.650	1.00
205_N	236_M	0.649	1.00
123_T	126_G	0.649	1.00
120_F	125_S	0.646	1.00
150_Y	155_F	0.646	1.00
225_F	425_G	0.646	1.00
407_V	412_K	0.646	1.00
52_N	55_Y	0.644	1.00
23_A	54_D	0.644	1.00
222_V	426_N	0.641	1.00
49_N	55_Y	0.641	1.00
92_T	138_S	0.640	1.00
44_L	331_L	0.640	1.00
8_A	13_L	0.639	1.00
255_S	267_T	0.638	1.00
414_P	418_L	0.638	1.00
107_V	321_Y	0.635	1.00
151_N	284_N	0.635	1.00
81_A	315_G	0.633	1.00
27_I	316_K	0.633	1.00
242_K	245_D	0.631	1.00
253_D	257_E	0.631	1.00
94_T	98_S	0.631	1.00
247_S	258_K	0.630	1.00
5_H	12_A	0.626	1.00
13_L	16_A	0.625	1.00
397_R	401_D	0.624	1.00
157_K	183_G	0.623	1.00
169_W	173_A	0.623	1.00
106_D	110_E	0.621	1.00
30_W	60_T	0.621	1.00
415_Q	418_L	0.621	1.00
102_K	325_A	0.620	1.00
44_L	339_E	0.616	1.00
334_P	350_T	0.615	1.00
203_A	380_P	0.614	1.00
95_M	101_I	0.612	1.00
175_Y	179_L	0.610	1.00
106_D	135_H	0.608	1.00
118_S	121_V	0.608	1.00
238_E	241_N	0.605	1.00
93_A	97_A	0.605	1.00
177_A	180_K	0.604	1.00
102_K	315_G	0.601	1.00
274_L	278_R	0.601	1.00
417_A	420_T	0.598	1.00
275_A	279_E	0.595	1.00
121_V	354_Y	0.594	1.00
367_P	371_T	0.592	1.00
180_K	186_C	0.592	1.00
48_F	57_I	0.592	1.00
316_K	319_E	0.591	1.00
380_P	383_P	0.591	1.00
202_S	233_H	0.590	1.00
128_Y	138_S	0.589	1.00
87_V	95_M	0.586	1.00
229_E	233_H	0.585	1.00
227_K	422_V	0.585	1.00
258_K	261_N	0.583	1.00
405_E	409_T	0.583	1.00
68_N	72_G	0.583	1.00
92_T	96_M	0.582	1.00
394_P	398_V	0.581	1.00
119_Q	334_P	0.580	1.00
179_L	182_S	0.578	1.00
83_A	319_E	0.577	1.00
189_A	255_S	0.576	1.00
29_F	45_A	0.573	1.00
240_M	246_F	0.571	1.00
414_P	417_A	0.571	1.00
310_L	328_L	0.569	1.00
28_P	75_A	0.569	1.00
180_K	185_K	0.568	1.00
232_K	293_D	0.568	1.00
151_N	262_G	0.568	1.00
181_A	184_M	0.566	1.00
105_Y	325_A	0.566	1.00
260_Y	280_Y	0.565	1.00
27_I	83_A	0.565	1.00
29_F	59_P	0.565	1.00
5_H	8_A	0.564	1.00
155_F	265_A	0.563	1.00
60_T	75_A	0.562	1.00
69_L	94_T	0.562	1.00
107_V	110_E	0.559	1.00
208_P	211_S	0.556	1.00
144_S	308_A	0.556	1.00
11_L	17_L	0.554	1.00
91_G	94_T	0.553	1.00
110_E	322_T	0.552	1.00
205_N	233_H	0.552	1.00
226_N	415_Q	0.552	1.00
148_L	268_T	0.552	1.00
67_Q	71_A	0.549	1.00
403_E	407_V	0.548	1.00
278_R	282_K	0.548	1.00
259_F	283_F	0.547	1.00
96_M	99_K	0.547	1.00
368_G	372_A	0.547	1.00
200_N	203_A	0.546	1.00
28_P	83_A	0.546	1.00
371_T	375_Q	0.544	1.00
376_M	379_K	0.539	1.00
244_G	247_S	0.538	1.00
354_Y	357_T	0.538	1.00
22_Q	25_T	0.538	1.00
286_G	371_T	0.537	1.00
238_E	413_T	0.537	1.00
176_A	240_M	0.536	1.00
310_L	331_L	0.535	1.00
5_H	11_L	0.535	1.00
99_K	102_K	0.535	1.00
100_A	103_P	0.535	1.00
75_A	82_P	0.534	1.00
224_E	422_V	0.533	1.00
42_D	59_P	0.532	1.00
70_S	73_I	0.532	1.00
166_P	175_Y	0.531	1.00
276_N	280_Y	0.530	1.00
180_K	184_M	0.529	1.00
108_F	111_A	0.529	1.00
92_T	101_I	0.529	1.00
255_S	264_C	0.529	1.00
211_S	224_E	0.528	1.00
219_T	222_V	0.527	1.00
73_I	94_T	0.526	1.00
12_A	16_A	0.526	1.00
24_V	53_P	0.524	1.00
35_G	38_G	0.524	1.00
237_L	241_N	0.524	1.00
392_N	396_I	0.524	1.00
256_T	269_A	0.523	1.00
320_T	324_V	0.523	1.00
203_A	206_G	0.523	1.00
104_V	328_L	0.522	1.00
325_A	328_L	0.521	1.00
108_F	325_A	0.521	1.00
189_A	258_K	0.520	1.00
186_C	247_S	0.519	1.00
121_V	124_V	0.518	1.00
6_Y	11_L	0.517	1.00
278_R	285_Y	0.517	1.00
149_Y	274_L	0.517	1.00
161_D	166_P	0.516	1.00
395_Q	399_I	0.516	1.00
233_H	237_L	0.516	1.00
152_K	283_F	0.515	1.00
88_Y	91_G	0.515	1.00
60_T	71_A	0.514	1.00
203_A	207_L	0.514	1.00
35_G	39_K	0.514	1.00
259_F	267_T	0.513	1.00
245_D	248_Y	0.513	1.00
156_K	159_G	0.513	1.00
156_K	286_G	0.512	1.00
226_N	231_V	0.511	1.00
231_V	419_D	0.511	1.00
337_A	349_I	0.510	1.00
29_F	327_F	0.509	1.00
230_Q	422_V	0.508	1.00
149_Y	285_Y	0.507	1.00
161_D	171_D	0.507	1.00
154_A	183_G	0.507	1.00
129_S	132_K	0.506	1.00
406_S	417_A	0.506	1.00
329_D	333_K	0.506	1.00
104_V	325_A	0.505	1.00
49_N	327_F	0.505	1.00
65_Y	69_L	0.505	1.00
421_A	425_G	0.504	1.00
144_S	307_G	0.504	1.00
52_N	323_G	0.503	1.00
246_F	250_G	0.503	1.00
41_V	44_L	0.503	1.00
167_K	172_L	0.502	1.00
154_A	185_K	0.502	1.00
36_E	39_K	0.502	1.00
56_K	59_P	0.502	1.00
24_V	55_Y	0.501	1.00
21_A	24_V	0.501	1.00
13_L	17_L	0.500	1.00
62_K	68_N	0.500	1.00
160_L	265_A	0.500	1.00
171_D	175_Y	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3uorA	1	0.8813	100	0.164	Contact Map
4mfiA	1	0.8973	100	0.165	Contact Map
4r6kA	1	0.8904	100	0.173	Contact Map
4r9fA	1	0.8584	100	0.182	Contact Map
4r2fA	1	0.8516	100	0.197	Contact Map
4aq4A	1	0.9521	100	0.207	Contact Map
4ovjA	1	0.8676	100	0.22	Contact Map
3k01A	1	0.8699	100	0.223	Contact Map
3vxbA	1	0.8607	100	0.229	Contact Map
4gqoA	1	0.8744	100	0.231	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0124 seconds.