RMUC - ECOLI - GREMLIN Contacts

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RMUC - DNA recombination protein RmuC

UniProt:	P0AG71	Sequences: MDFSIMVYAVIALVGVAIGWLFASYQHAQQKAEQLAEREEMVAELSAAKQQITQSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLTHEIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWGEVVLTRVLEASGLREGYEYETQVSIENDARSRMQPDVIVRLPQGKDVVIDAKMTLVAYERYFNAEDDYTRESALQEHIASVRNHIRLLGRKDYQQLPGLRTLDYVLMFIPVEPAFLLALDRQPELITEALKNNIMLVSPTTLLVALRTIANLWRYEHQSRNAQQIADRASKLYDKMRLFIDDMSAIGQSLDKAQDNYRQAMKKLSSGRGNVLAQAEAFRGLGVEIKREINPDLAEQAVSQDEEYRLRSVPEQPNDEAYQRDDEYNQQSR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG11472
Length:	475 (424)
Sequences:	1574 (1185)
Seq/√Len:	57.5

ECOLI - RMUC

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
154_R	158_D	5.696	1.00
395_S	398_K	4.907	1.00
150_D	154_R	3.948	1.00
388_D	409_K	3.837	1.00
395_S	402_N	3.726	1.00
128_R	132_E	3.653	1.00
116_E	121_R	3.528	1.00
161_G	165_Q	3.317	1.00
83_L	86_V	3.165	1.00
287_V	315_I	2.908	1.00
374_R	420_Q	2.897	1.00
76_N	79_L	2.890	1.00
69_V	72_L	2.795	1.00
292_R	334_E	2.795	1.00
391_A	398_K	2.730	1.00
273_D	276_R	2.622	1.00
228_Q	242_D	2.525	1.00
245_V	255_I	2.512	1.00
226_E	246_R	2.475	1.00
62_C	65_L	2.460	1.00
132_E	136_Q	2.457	1.00
272_D	275_T	2.369	1.00
230_S	238_R	2.333	1.00
15_G	19_G	2.320	1.00
288_R	334_E	2.313	1.00
11_I	15_G	2.271	1.00
61_E	66_N	2.229	1.00
292_R	338_N	2.228	1.00
230_S	240_Q	2.223	1.00
391_A	405_Q	2.204	1.00
397_D	400_Q	2.192	1.00
263_A	282_E	2.161	1.00
226_E	229_V	2.144	1.00
394_Q	398_K	2.124	1.00
160_F	163_E	2.115	1.00
187_E	190_N	2.073	1.00
220_R	223_Y	2.066	1.00
109_Q	113_E	2.061	1.00
419_A	423_A	2.020	1.00
175_R	179_Q	2.019	1.00
401_D	405_Q	2.018	1.00
173_E	176_N	2.011	1.00
44_E	49_K	1.964	1.00
312_L	343_V	1.949	1.00
82_D	87_T	1.941	1.00
211_T	227_T	1.935	1.00
49_K	53_T	1.901	1.00
232_E	238_R	1.898	1.00
233_N	237_S	1.895	1.00
287_V	324_A	1.889	1.00
228_Q	240_Q	1.866	1.00
253_V	355_I	1.861	1.00
94_Q	98_D	1.840	0.99
45_L	48_A	1.835	0.99
117_N	121_R	1.833	0.99
19_G	23_A	1.816	0.99
95_Q	99_D	1.811	0.99
172_H	175_R	1.803	0.99
398_K	402_N	1.802	0.99
393_G	403_Y	1.799	0.99
291_I	342_L	1.791	0.99
395_S	399_A	1.789	0.99
289_N	293_L	1.777	0.99
113_E	117_N	1.770	0.99
200_K	204_N	1.756	0.99
139_N	143_S	1.755	0.99
163_E	167_R	1.745	0.99
270_A	275_T	1.744	0.99
115_F	118_L	1.736	0.99
204_N	240_Q	1.734	0.99
323_L	326_D	1.704	0.99
38_R	41_M	1.690	0.99
397_D	401_D	1.685	0.99
396_L	399_A	1.679	0.99
73_Q	77_T	1.676	0.99
385_F	406_A	1.650	0.99
102_R	106_N	1.648	0.99
277_E	281_Q	1.637	0.99
370_Q	373_D	1.636	0.99
267_Y	323_L	1.629	0.99
392_I	406_A	1.627	0.99
260_T	286_S	1.623	0.99
171_T	175_R	1.615	0.99
68_E	73_Q	1.614	0.99
398_K	401_D	1.612	0.99
46_S	50_Q	1.595	0.99
405_Q	408_K	1.584	0.98
85_E	89_R	1.541	0.98
354_T	358_L	1.535	0.98
106_N	109_Q	1.534	0.98
107_S	111_L	1.533	0.98
76_N	80_E	1.522	0.98
334_E	337_K	1.519	0.98
43_A	47_A	1.511	0.98
145_L	149_L	1.499	0.98
212_R	216_A	1.484	0.98
376_S	429_V	1.482	0.98
121_R	125_H	1.474	0.98
12_A	15_G	1.472	0.98
227_T	243_V	1.471	0.98
89_R	92_A	1.457	0.97
124_E	129_R	1.456	0.97
265_E	269_N	1.445	0.97
290_H	293_L	1.443	0.97
37_E	40_E	1.443	0.97
115_F	119_A	1.439	0.97
373_D	377_K	1.435	0.97
422_E	425_R	1.420	0.97
199_N	286_S	1.417	0.97
38_R	42_V	1.410	0.97
312_L	355_I	1.394	0.97
60_A	64_L	1.378	0.96
105_I	109_Q	1.372	0.96
84_R	88_T	1.356	0.96
158_D	162_K	1.351	0.96
408_K	413_G	1.348	0.96
391_A	395_S	1.346	0.96
7_V	11_I	1.336	0.96
362_E	366_R	1.328	0.95
11_I	16_V	1.326	0.95
266_R	282_E	1.316	0.95
333_T	337_K	1.311	0.95
214_L	243_V	1.309	0.95
164_A	168_H	1.302	0.95
281_Q	285_A	1.298	0.95
382_M	421_A	1.294	0.95
57_H	61_E	1.293	0.95
109_Q	112_S	1.287	0.95
417_V	421_A	1.284	0.95
199_N	262_V	1.280	0.94
78_S	82_D	1.277	0.94
263_A	286_S	1.276	0.94
56_E	60_A	1.271	0.94
47_A	50_Q	1.268	0.94
100_K	103_Q	1.261	0.94
8_Y	11_I	1.259	0.94
262_V	286_S	1.259	0.94
180_L	183_Q	1.258	0.94
292_R	296_R	1.258	0.94
242_D	293_L	1.256	0.94
41_M	44_E	1.255	0.94
390_S	394_Q	1.246	0.94
88_T	92_A	1.230	0.93
266_R	279_A	1.228	0.93
381_K	409_K	1.225	0.93
92_A	95_Q	1.224	0.93
351_A	358_L	1.222	0.93
392_I	399_A	1.217	0.93
289_N	292_R	1.213	0.93
96_H	100_K	1.212	0.93
98_D	102_R	1.206	0.92
82_D	85_E	1.206	0.92
90_M	94_Q	1.187	0.92
87_T	91_E	1.183	0.92
105_I	110_R	1.176	0.91
71_S	75_I	1.169	0.91
140_S	143_S	1.167	0.91
65_L	69_V	1.162	0.91
246_R	252_D	1.160	0.91
117_N	120_N	1.149	0.90
381_K	384_L	1.139	0.90
97_A	101_I	1.135	0.90
384_L	409_K	1.134	0.90
44_E	47_A	1.131	0.90
392_I	402_N	1.129	0.90
255_I	348_L	1.122	0.89
165_Q	171_T	1.117	0.89
89_R	96_H	1.113	0.89
72_L	75_I	1.105	0.89
396_L	400_Q	1.102	0.89
46_S	49_K	1.100	0.88
374_R	377_K	1.099	0.88
21_L	25_Y	1.098	0.88
284_I	328_Q	1.095	0.88
275_T	279_A	1.094	0.88
253_V	308_L	1.089	0.88
213_V	257_A	1.089	0.88
123_F	127_N	1.088	0.88
391_A	402_N	1.087	0.88
56_E	59_R	1.085	0.88
64_L	68_E	1.074	0.87
393_G	407_M	1.072	0.87
90_M	93_A	1.067	0.87
161_G	164_A	1.062	0.87
366_R	370_Q	1.058	0.86
379_Y	422_E	1.056	0.86
94_Q	97_A	1.043	0.86
277_E	327_R	1.042	0.86
44_E	48_A	1.042	0.86
273_D	277_E	1.039	0.85
405_Q	409_K	1.038	0.85
23_A	26_Q	1.036	0.85
12_A	36_A	1.036	0.85
168_H	172_H	1.034	0.85
185_A	189_I	1.029	0.85
419_A	422_E	1.022	0.84
32_A	36_A	1.019	0.84
33_E	36_A	1.018	0.84
102_R	105_I	1.017	0.84
91_E	95_Q	1.017	0.84
42_V	46_S	1.012	0.84
81_A	84_R	1.011	0.84
124_E	128_R	1.010	0.84
310_Y	347_T	1.005	0.83
270_A	273_D	1.002	0.83
370_Q	374_R	1.001	0.83
381_K	385_F	0.999	0.83
368_A	372_A	0.999	0.83
376_S	380_D	0.997	0.83
48_A	52_I	0.994	0.83
325_L	346_T	0.994	0.83
285_A	288_R	0.991	0.83
312_L	351_A	0.987	0.82
286_S	290_H	0.982	0.82
160_F	167_R	0.981	0.82
110_R	113_E	0.978	0.82
62_C	66_N	0.973	0.81
131_D	134_N	0.973	0.81
108_E	112_S	0.972	0.81
135_R	139_N	0.971	0.81
104_M	107_S	0.969	0.81
259_M	354_T	0.967	0.81
148_Q	151_G	0.967	0.81
252_D	306_R	0.965	0.81
409_K	413_G	0.964	0.81
287_V	293_L	0.962	0.81
127_N	134_N	0.958	0.80
257_A	297_K	0.957	0.80
165_Q	169_T	0.955	0.80
17_A	21_L	0.954	0.80
381_K	420_Q	0.952	0.80
160_F	166_E	0.950	0.80
382_M	417_V	0.950	0.80
70_R	74_S	0.947	0.80
285_A	289_N	0.946	0.80
23_A	27_H	0.944	0.79
99_D	103_Q	0.940	0.79
202_Q	364_Q	0.939	0.79
13_L	16_V	0.937	0.79
72_L	76_N	0.933	0.79
222_G	226_E	0.930	0.78
40_E	48_A	0.927	0.78
300_Q	311_V	0.924	0.78
12_A	16_V	0.922	0.78
55_S	59_R	0.918	0.77
40_E	43_A	0.914	0.77
35_L	39_E	0.909	0.77
9_A	23_A	0.909	0.77
425_R	434_E	0.907	0.77
420_Q	423_A	0.907	0.77
424_F	427_L	0.906	0.77
77_T	81_A	0.906	0.77
211_T	221_E	0.901	0.76
57_H	60_A	0.899	0.76
39_E	43_A	0.899	0.76
114_Q	117_N	0.898	0.76
43_A	46_S	0.896	0.76
143_S	147_E	0.896	0.76
252_D	308_L	0.894	0.76
130_V	138_L	0.893	0.75
37_E	42_V	0.893	0.75
251_K	308_L	0.892	0.75
341_M	351_A	0.891	0.75
390_S	407_M	0.889	0.75
125_H	129_R	0.888	0.75
127_N	130_V	0.884	0.75
160_F	168_H	0.883	0.75
58_W	65_L	0.882	0.75
10_V	18_I	0.881	0.74
136_Q	140_S	0.880	0.74
177_L	181_N	0.880	0.74
123_F	134_N	0.880	0.74
131_D	137_S	0.880	0.74
32_A	35_L	0.876	0.74
64_L	67_N	0.875	0.74
336_L	350_V	0.873	0.74
150_D	158_D	0.870	0.74
406_A	409_K	0.869	0.73
96_H	99_D	0.869	0.73
231_I	244_I	0.868	0.73
310_Y	336_L	0.865	0.73
126_S	131_D	0.863	0.73
400_Q	404_R	0.863	0.73
263_A	266_R	0.859	0.73
46_S	51_Q	0.857	0.72
103_Q	106_N	0.855	0.72
278_S	282_E	0.855	0.72
361_Y	365_S	0.852	0.72
87_T	94_Q	0.851	0.72
381_K	388_D	0.850	0.72
18_I	22_F	0.850	0.72
413_G	416_N	0.848	0.72
50_Q	53_T	0.846	0.71
49_K	52_I	0.845	0.71
15_G	23_A	0.843	0.71
93_A	100_K	0.841	0.71
16_V	19_G	0.841	0.71
126_S	130_V	0.839	0.71
263_A	317_V	0.838	0.71
187_E	192_T	0.832	0.70
279_A	282_E	0.830	0.70
61_E	143_S	0.830	0.70
402_N	406_A	0.829	0.70
103_Q	107_S	0.824	0.69
76_N	83_L	0.823	0.69
99_D	102_R	0.821	0.69
385_F	392_I	0.821	0.69
11_I	20_W	0.821	0.69
13_L	25_Y	0.818	0.69
195_L	314_F	0.817	0.69
224_E	345_P	0.816	0.69
93_A	97_A	0.816	0.69
74_S	77_T	0.812	0.68
163_E	166_E	0.812	0.68
401_D	408_K	0.809	0.68
36_A	39_E	0.808	0.68
270_A	279_A	0.808	0.68
79_L	83_L	0.808	0.68
20_W	27_H	0.805	0.68
268_F	310_Y	0.803	0.67
24_S	27_H	0.802	0.67
39_E	46_S	0.801	0.67
67_N	71_S	0.801	0.67
220_R	224_E	0.798	0.67
17_A	23_A	0.797	0.67
416_N	419_A	0.795	0.67
93_A	103_Q	0.792	0.66
408_K	411_S	0.792	0.66
39_E	42_V	0.785	0.66
172_H	176_N	0.783	0.65
13_L	17_A	0.779	0.65
416_N	420_Q	0.779	0.65
211_T	215_E	0.778	0.65
341_M	346_T	0.777	0.65
100_K	104_M	0.775	0.65
201_T	389_M	0.771	0.64
388_D	405_Q	0.770	0.64
319_P	356_A	0.767	0.64
288_R	328_Q	0.766	0.64
213_V	243_V	0.766	0.64
321_F	332_I	0.764	0.64
41_M	48_A	0.761	0.63
357_N	361_Y	0.760	0.63
27_H	32_A	0.757	0.63
209_V	314_F	0.756	0.63
55_S	58_W	0.756	0.63
38_R	45_L	0.755	0.63
40_E	44_E	0.754	0.63
215_E	225_Y	0.749	0.62
317_V	320_A	0.745	0.62
138_L	145_L	0.745	0.62
322_L	342_L	0.744	0.62
45_L	52_I	0.742	0.61
247_L	302_L	0.742	0.61
368_A	389_M	0.741	0.61
205_W	406_A	0.741	0.61
350_V	385_F	0.738	0.61
386_I	390_S	0.737	0.61
14_V	36_A	0.737	0.61
34_Q	38_R	0.734	0.60
101_I	107_S	0.732	0.60
344_S	355_I	0.731	0.60
383_R	387_D	0.730	0.60
364_Q	372_A	0.730	0.60
111_L	119_A	0.728	0.60
19_G	22_F	0.727	0.60
389_M	407_M	0.723	0.59
10_V	24_S	0.721	0.59
376_S	431_I	0.720	0.59
208_V	212_R	0.719	0.59
110_R	114_Q	0.718	0.59
388_D	415_G	0.717	0.59
247_L	347_T	0.713	0.58
33_E	47_A	0.712	0.58
262_V	266_R	0.711	0.58
107_S	112_S	0.710	0.58
239_M	302_L	0.710	0.58
17_A	27_H	0.708	0.58
93_A	101_I	0.707	0.58
16_V	20_W	0.707	0.58
108_E	111_L	0.703	0.57
139_N	276_R	0.703	0.57
20_W	24_S	0.702	0.57
221_E	227_T	0.702	0.57
211_T	225_Y	0.702	0.57
69_V	73_Q	0.701	0.57
406_A	410_L	0.697	0.57
61_E	71_S	0.695	0.56
93_A	96_H	0.692	0.56
62_C	69_V	0.690	0.56
97_A	100_K	0.689	0.56
17_A	43_A	0.688	0.56
48_A	51_Q	0.686	0.55
180_L	184_M	0.685	0.55
392_I	403_Y	0.685	0.55
248_P	318_E	0.685	0.55
176_N	179_Q	0.684	0.55
18_I	23_A	0.684	0.55
9_A	14_V	0.681	0.55
28_A	36_A	0.681	0.55
312_L	354_T	0.680	0.55
116_E	119_A	0.678	0.54
86_V	90_M	0.678	0.54
75_I	86_V	0.676	0.54
240_Q	290_H	0.676	0.54
174_I	181_N	0.673	0.54
95_Q	100_K	0.673	0.54
424_F	429_V	0.671	0.54
232_E	301_Q	0.670	0.54
35_L	38_R	0.667	0.53
287_V	313_M	0.667	0.53
158_D	245_V	0.666	0.53
104_M	108_E	0.664	0.53
40_E	46_S	0.661	0.53
11_I	37_E	0.660	0.52
212_R	265_E	0.660	0.52
224_E	308_L	0.659	0.52
108_E	116_E	0.658	0.52
37_E	41_M	0.657	0.52
48_A	55_S	0.657	0.52
320_A	375_A	0.657	0.52
15_G	20_W	0.656	0.52
11_I	27_H	0.656	0.52
239_M	254_V	0.651	0.51
210_L	243_V	0.650	0.51
332_I	349_L	0.649	0.51
265_E	317_V	0.649	0.51
335_A	342_L	0.648	0.51
407_M	411_S	0.647	0.51
167_R	174_I	0.647	0.51
397_D	404_R	0.647	0.51
24_S	47_A	0.646	0.51
415_G	420_Q	0.646	0.51
392_I	395_S	0.646	0.51
280_L	283_H	0.645	0.51
134_N	138_L	0.644	0.51
14_V	35_L	0.643	0.51
124_E	134_N	0.643	0.51
394_Q	397_D	0.641	0.50
308_L	350_V	0.640	0.50
14_V	21_L	0.639	0.50
328_Q	334_E	0.638	0.50
399_A	402_N	0.637	0.50
394_Q	401_D	0.637	0.50
200_K	214_L	0.636	0.50
190_N	213_V	0.636	0.50
196_K	266_R	0.636	0.50
15_G	21_L	0.635	0.50
261_L	286_S	0.634	0.50
209_V	243_V	0.633	0.50
381_K	408_K	0.632	0.49
17_A	22_F	0.631	0.49
115_F	205_W	0.631	0.49
421_A	424_F	0.630	0.49
38_R	47_A	0.629	0.49
17_A	35_L	0.628	0.49
381_K	415_G	0.627	0.49
208_V	344_S	0.627	0.49
7_V	23_A	0.623	0.48
7_V	15_G	0.623	0.48
41_M	46_S	0.623	0.48
153_R	253_V	0.621	0.48
9_A	34_Q	0.621	0.48
384_L	388_D	0.621	0.48
90_M	97_A	0.621	0.48
45_L	53_T	0.620	0.48
173_E	177_L	0.620	0.48
155_Q	159_S	0.620	0.48
309_D	339_N	0.618	0.48
374_R	423_A	0.617	0.48
321_F	346_T	0.616	0.48
209_V	224_E	0.616	0.48
221_E	365_S	0.616	0.48
126_S	129_R	0.615	0.48
8_Y	14_V	0.614	0.47
142_L	145_L	0.613	0.47
83_L	93_A	0.610	0.47
73_Q	80_E	0.609	0.47
212_R	224_E	0.608	0.47
66_N	139_N	0.607	0.47
233_N	239_M	0.607	0.47
393_G	400_Q	0.606	0.47
380_D	428_G	0.606	0.47
7_V	20_W	0.602	0.46
404_R	408_K	0.601	0.46
77_T	80_E	0.600	0.46
70_R	102_R	0.600	0.46
86_V	93_A	0.599	0.46
113_E	116_E	0.598	0.46
10_V	51_Q	0.596	0.45
8_Y	17_A	0.594	0.45
291_I	335_A	0.592	0.45
25_Y	48_A	0.592	0.45
310_Y	377_K	0.591	0.45
400_Q	403_Y	0.590	0.45
13_L	74_S	0.590	0.45
317_V	347_T	0.589	0.45
10_V	21_L	0.588	0.45
330_E	337_K	0.588	0.45
391_A	394_Q	0.586	0.44
7_V	43_A	0.584	0.44
213_V	385_F	0.584	0.44
9_A	16_V	0.583	0.44
23_A	34_Q	0.583	0.44
37_E	47_A	0.583	0.44
326_D	350_V	0.583	0.44
261_L	317_V	0.583	0.44
57_H	62_C	0.581	0.44
23_A	42_V	0.580	0.44
9_A	18_I	0.580	0.44
332_I	341_M	0.580	0.44
59_R	63_E	0.580	0.44
148_Q	361_Y	0.579	0.44
101_I	104_M	0.579	0.44
403_Y	429_V	0.578	0.43
19_G	51_Q	0.577	0.43
10_V	22_F	0.577	0.43
36_A	49_K	0.576	0.43
16_V	22_F	0.573	0.43
325_L	342_L	0.573	0.43
147_E	151_G	0.573	0.43
123_F	126_S	0.572	0.43
134_N	145_L	0.570	0.43
36_A	43_A	0.570	0.43
347_T	351_A	0.567	0.42
308_L	344_S	0.567	0.42
177_L	371_I	0.567	0.42
202_Q	416_N	0.567	0.42
8_Y	25_Y	0.566	0.42
63_E	67_N	0.566	0.42
387_D	433_R	0.564	0.42
291_I	334_E	0.564	0.42
10_V	17_A	0.561	0.42
43_A	52_I	0.561	0.42
322_L	350_V	0.559	0.41
9_A	22_F	0.558	0.41
168_H	178_Q	0.558	0.41
26_Q	32_A	0.558	0.41
204_N	265_E	0.558	0.41
71_S	82_D	0.558	0.41
14_V	28_A	0.557	0.41
59_R	62_C	0.557	0.41
354_T	357_N	0.553	0.41
325_L	332_I	0.552	0.41
168_H	173_E	0.552	0.41
152_F	177_L	0.552	0.41
89_R	94_Q	0.551	0.41
252_D	305_L	0.551	0.41
18_I	74_S	0.551	0.41
44_E	77_T	0.550	0.40
62_C	80_E	0.549	0.40
73_Q	105_I	0.548	0.40
21_L	44_E	0.548	0.40
106_N	110_R	0.546	0.40
70_R	73_Q	0.545	0.40
347_T	357_N	0.545	0.40
310_Y	326_D	0.545	0.40
43_A	72_L	0.545	0.40
44_E	60_A	0.545	0.40
17_A	25_Y	0.543	0.40
314_F	410_L	0.543	0.40
13_L	35_L	0.543	0.40
68_E	75_I	0.543	0.40
138_L	148_Q	0.542	0.40
32_A	38_R	0.542	0.40
315_I	437_P	0.541	0.40
75_I	82_D	0.540	0.39
92_A	96_H	0.540	0.39
403_Y	407_M	0.537	0.39
381_K	413_G	0.537	0.39
217_S	361_Y	0.536	0.39
321_F	341_M	0.536	0.39
350_V	357_N	0.535	0.39
339_N	360_R	0.535	0.39
119_A	124_E	0.535	0.39
351_A	357_N	0.533	0.39
80_E	84_R	0.533	0.39
50_Q	57_H	0.532	0.39
293_L	296_R	0.532	0.39
12_A	33_E	0.531	0.39
152_F	167_R	0.531	0.39
150_D	153_R	0.531	0.39
66_N	70_R	0.531	0.39
12_A	19_G	0.530	0.38
130_V	141_L	0.529	0.38
332_I	347_T	0.529	0.38
22_F	27_H	0.528	0.38
9_A	17_A	0.524	0.38
58_W	91_E	0.523	0.38
382_M	431_I	0.522	0.38
47_A	52_I	0.521	0.37
13_L	20_W	0.520	0.37
372_A	376_S	0.520	0.37
14_V	67_N	0.519	0.37
32_A	37_E	0.519	0.37
148_Q	373_D	0.519	0.37
114_Q	296_R	0.518	0.37
261_L	265_E	0.518	0.37
48_A	53_T	0.517	0.37
343_V	354_T	0.517	0.37
147_E	157_Q	0.516	0.37
83_L	90_M	0.516	0.37
213_V	345_P	0.516	0.37
65_L	68_E	0.515	0.37
18_I	95_Q	0.515	0.37
248_P	264_Y	0.515	0.37
19_G	25_Y	0.515	0.37
15_G	34_Q	0.514	0.37
168_H	174_I	0.514	0.37
62_C	272_D	0.514	0.37
9_A	21_L	0.513	0.37
159_S	175_R	0.511	0.36
224_E	310_Y	0.511	0.36
195_L	248_P	0.510	0.36
12_A	27_H	0.510	0.36
58_W	61_E	0.510	0.36
196_K	265_E	0.510	0.36
169_T	253_V	0.510	0.36
230_S	255_I	0.509	0.36
134_N	137_S	0.509	0.36
101_I	105_I	0.509	0.36
37_E	44_E	0.508	0.36
52_I	55_S	0.508	0.36
96_H	101_I	0.506	0.36
196_K	205_W	0.506	0.36
274_Y	277_E	0.505	0.36
144_P	359_W	0.504	0.36
163_E	308_L	0.504	0.36
388_D	408_K	0.504	0.36
321_F	335_A	0.504	0.36
351_A	354_T	0.503	0.36
11_I	18_I	0.503	0.36
253_V	352_L	0.503	0.36
55_S	66_N	0.503	0.36
231_I	242_D	0.503	0.36
197_G	200_K	0.500	0.35

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2dfsA	2	0.2484	95.7	0.948	Contact Map
2e7sA	2	0.2611	91	0.957	Contact Map
3na7A	1	0.48	90.9	0.957	Contact Map
4q4gX	1	0.2884	89.1	0.959	Contact Map
4rsiB	1	0.7516	86	0.961	Contact Map
4cgkA	3	0.5389	85	0.961	Contact Map
1i84S	2	0	80.6	0.963	Contact Map
2gb7A	2	0.5853	78.6	0.964	Contact Map
2ocyA	4	0.3074	78.1	0.964	Contact Map
4iloA	3	0.4589	72.5	0.966	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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