GREMLIN Database
RS17 - 30S ribosomal protein S17
UniProt: P0AG63 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG10916
Length: 84 (77)
Sequences: 2109 (938)
Seq/√Len: 106.8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
45_H70_T4.4321.00
60_E77_R3.5171.00
24_A41_T3.0891.00
21_I75_L2.6251.00
18_E51_N2.0571.00
15_D54_G2.0531.00
62_R74_T1.9091.00
54_G81_K1.8471.00
28_F39_K1.8011.00
53_C75_L1.7751.00
15_D55_I1.6861.00
44_L61_I1.6701.00
5_I62_R1.5771.00
25_I44_L1.5761.00
52_E81_K1.5551.00
11_R58_V1.4821.00
64_C74_T1.4491.00
26_E39_K1.3741.00
46_V61_I1.3651.00
53_C78_V1.3641.00
30_K35_G1.3521.00
29_V40_R1.3380.99
22_V45_H1.3350.99
62_R76_V1.3150.99
17_M45_H1.3090.99
21_I53_C1.3080.99
28_F37_F1.2940.99
58_V80_E1.2580.99
13_V24_A1.2130.99
52_E78_V1.1820.99
9_Q60_E1.1660.99
7_T60_E1.1420.98
19_K49_E1.1410.98
6_R63_E1.1270.98
21_I46_V1.0860.98
11_R24_A1.0330.97
60_E79_V1.0160.97
9_Q58_V1.0070.96
30_K37_F0.9890.96
22_V43_K0.9870.96
48_D53_C0.9820.96
27_R37_F0.9800.96
48_D51_N0.9700.96
67_L74_T0.9690.96
7_T62_R0.9670.95
46_V59_V0.9590.95
13_V43_K0.9520.95
66_P72_S0.9490.95
20_S45_H0.9470.95
75_L78_V0.9340.95
8_L73_W0.8990.93
47_H71_K0.8790.93
7_T76_V0.8770.92
23_V61_I0.8620.92
14_S22_V0.8290.90
46_V75_L0.8200.90
23_V59_V0.8150.89
16_K55_I0.8140.89
21_I59_V0.8120.89
15_D21_I0.8070.89
68_S71_K0.8000.89
24_A43_K0.7970.88
60_E76_V0.7830.87
11_R26_E0.7800.87
29_V37_F0.7770.87
8_L61_I0.7690.87
64_C67_L0.7670.86
67_L72_S0.7670.86
23_V46_V0.7630.86
52_E77_R0.7420.84
31_H38_I0.7120.82
36_K80_E0.6810.79
8_L44_L0.6790.79
19_K48_D0.6790.79
6_R72_S0.6790.79
33_I37_F0.6320.74
41_T78_V0.6270.73
22_V70_T0.6240.73
15_D53_C0.6230.73
16_K22_V0.6130.72
47_H68_S0.6110.71
5_I63_E0.6060.71
22_V41_T0.6010.70
32_P37_F0.5950.69
27_R42_T0.5930.69
8_L27_R0.5890.69
49_E74_T0.5880.68
27_R69_K0.5880.68
17_M22_V0.5790.67
10_G56_G0.5760.67
26_E41_T0.5750.67
28_F38_I0.5740.67
5_I64_C0.5730.66
18_E48_D0.5690.66
37_F42_T0.5640.65
9_Q79_V0.5630.65
20_S71_K0.5610.65
13_V22_V0.5590.65
37_F40_R0.5570.64
31_H36_K0.5520.64
54_G57_D0.5490.63
6_R74_T0.5440.62
49_E65_R0.5440.62
11_R25_I0.5390.62
5_I74_T0.5270.60
32_P35_G0.5270.60
11_R32_P0.5210.59
29_V33_I0.5140.58
28_F40_R0.5090.57
6_R30_K0.5090.57
6_R64_C0.5080.57
29_V38_I0.5050.57
57_D78_V0.5050.57
29_V42_T0.5050.57
7_T69_K0.5030.57
41_T69_K0.5000.56
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1qd7I 1 0.9643 100 0.148 Contact Map
4tp8Q 1 0.9524 100 0.151 Contact Map
4bpeQ 1 1 100 0.155 Contact Map
4rb5Q 1 0.9643 100 0.156 Contact Map
3j20R 1 1 100 0.157 Contact Map
3bbnQ 1 0.9524 100 0.158 Contact Map
3j7aV 1 1 100 0.166 Contact Map
3zeyE 1 1 100 0.171 Contact Map
3j60L 1 0.7024 100 0.177 Contact Map
4ujpM 1 1 100 0.177 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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