GREMLIN Database
YIBN - Uncharacterized protein YibN
UniProt: P0AG27 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG12295
Length: 143 (112)
Sequences: 5214 (3914)
Seq/√Len: 369.8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
41_T44_E3.0771.00
96_P123_F2.8101.00
46_T137_L2.6931.00
65_F69_H2.3041.00
64_D106_Q2.3031.00
62_R75_N2.1781.00
129_V139_L2.1601.00
45_A125_L2.1351.00
99_V114_L2.0981.00
40_I44_E2.0341.00
45_A98_I1.9841.00
131_G135_E1.9821.00
55_V95_K1.9711.00
45_A56_V1.9371.00
85_N88_E1.8391.00
44_E48_L1.8241.00
42_R137_L1.8111.00
79_S82_K1.7401.00
107_C124_V1.7201.00
62_R66_R1.6701.00
42_R131_G1.6661.00
68_G133_A1.6531.00
127_E131_G1.6301.00
40_I45_A1.6191.00
42_R135_E1.6121.00
68_G141_R1.5701.00
111_A122_V1.4931.00
96_P121_Q1.4721.00
45_A54_A1.3321.00
59_L110_P1.3161.00
100_V129_V1.3151.00
56_V100_V1.2771.00
99_V111_A1.2691.00
70_I100_V1.2601.00
99_V122_V1.2501.00
39_V126_K1.2491.00
129_V133_A1.2471.00
64_D102_G1.2411.00
48_L51_K1.2271.00
46_T50_N1.2191.00
41_T126_K1.2161.00
111_A124_V1.1871.00
42_R125_L1.1871.00
61_Q64_D1.1761.00
92_H95_K1.1731.00
69_H100_V1.1651.00
97_V114_L1.1611.00
39_V124_V1.1191.00
93_K119_F1.1181.00
70_I73_S1.1131.00
35_S38_K1.1031.00
71_A140_V1.0971.00
40_I123_F1.0961.00
73_S100_V1.0901.00
101_D106_Q1.0811.00
108_Q124_V1.0711.00
42_R46_T1.0641.00
125_L131_G1.0641.00
45_A48_L1.0591.00
48_L54_A1.0321.00
54_A98_I1.0231.00
48_L96_P1.0171.00
112_N116_K1.0141.00
43_G135_E1.0081.00
115_T120_A1.0011.00
60_R129_V0.9961.00
68_G139_L0.9861.00
101_D104_G0.9811.00
44_E47_R0.9581.00
59_L99_V0.9581.00
57_V99_V0.9491.00
102_G105_M0.9441.00
55_V74_I0.9411.00
113_A117_A0.9391.00
61_Q106_Q0.9301.00
48_L98_I0.9211.00
103_S130_A0.9161.00
65_F75_N0.9071.00
101_D107_C0.8861.00
40_I98_I0.8841.00
43_G47_R0.8741.00
43_G137_L0.8651.00
111_A115_T0.8531.00
50_N53_D0.8421.00
125_L128_G0.8361.00
56_V98_I0.8251.00
114_L119_F0.8101.00
70_I132_W0.7951.00
102_G130_A0.7951.00
119_F122_V0.7861.00
46_T49_I0.7821.00
45_A49_I0.7771.00
82_K113_A0.7731.00
130_A133_A0.7621.00
55_V97_V0.7601.00
49_I56_V0.7581.00
98_I125_L0.7551.00
97_V119_F0.7521.00
60_R68_G0.7501.00
78_P110_P0.7461.00
66_R133_A0.7391.00
130_A134_G0.7371.00
38_K115_T0.7361.00
47_R51_K0.7321.00
85_N89_L0.7311.00
29_T32_S0.7231.00
70_I140_V0.7221.00
38_K123_F0.7000.99
115_T122_V0.6960.99
53_D95_K0.6890.99
40_I48_L0.6790.99
64_D67_K0.6780.99
77_L81_I0.6740.99
109_E112_N0.6710.99
57_V91_K0.6650.99
86_V113_A0.6580.99
56_V73_S0.6570.99
80_E84_N0.6540.99
60_R102_G0.6490.99
84_N88_E0.6380.99
87_G90_E0.6370.99
133_A139_L0.6310.99
40_I54_A0.6220.99
49_I54_A0.6170.99
60_R64_D0.6140.99
104_G124_V0.6140.99
54_A96_P0.6120.98
61_Q77_L0.6040.98
58_D73_S0.5990.98
90_E94_D0.5950.98
48_L52_E0.5850.98
102_G106_Q0.5850.98
109_E113_A0.5840.98
57_V60_R0.5840.98
125_L132_W0.5830.98
86_V114_L0.5800.98
64_D103_S0.5800.98
65_F100_V0.5700.98
80_E85_N0.5630.97
78_P109_E0.5590.97
55_V96_P0.5560.97
86_V110_P0.5520.97
100_V125_L0.5490.97
108_Q111_A0.5410.97
52_E121_Q0.5380.97
112_N115_T0.5360.97
87_G92_H0.5330.96
70_I125_L0.5330.96
76_L85_N0.5330.96
55_V91_K0.5310.96
94_D120_A0.5300.96
66_R139_L0.5270.96
63_D66_R0.5250.96
78_P113_A0.5240.96
49_I72_G0.5230.96
69_H140_V0.5210.96
76_L89_L0.5180.96
103_S106_Q0.5140.96
66_R140_V0.5130.96
61_Q79_S0.5120.96
69_H73_S0.5090.95
56_V70_I0.5060.95
67_K102_G0.5060.95
57_V114_L0.5040.95
76_L110_P0.5020.95
90_E119_F0.5010.95
113_A116_K0.5000.95
61_Q75_N0.5000.95
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1urhA 1 0.7552 99.9 0.326 Contact Map
3aayA 1 0.7692 99.9 0.331 Contact Map
1uarA 1 0.7762 99.9 0.335 Contact Map
1e0cA 1 0.7902 99.9 0.337 Contact Map
3hzuA 2 0.8462 99.9 0.343 Contact Map
1yt8A 1 0.7413 99.9 0.348 Contact Map
2hhgA 2 0.8531 99.9 0.351 Contact Map
1qxnA 2 0.8881 99.9 0.351 Contact Map
3tp9A 2 0.951 99.9 0.353 Contact Map
1rhsA 1 0.7902 99.9 0.355 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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