MEPM - ECOLI - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

MEPM - Murein DD-endopeptidase MepM

UniProt:	P0AFS9	Sequences: MQQIARSVALAFNNLPRPHRVMLGSLTVLTLAVAVWRPYVYHRDATPIVKTIELEQNEIRSLLPEASEPIDQAAQEDEAIPQDELDDKIAGEAGVHEYVVSTGDTLSSILNQYGIDMGDITQLAAADKELRNLKIGQQLSWTLTADGELQRLTWEVSRRETRTYDRTAANGFKMTSEMQQGEWVNNLLKGTVGGSFVASARNAGLTSAEVSAVIKAMQWQMDFRKLKKGDEFAVLMSREMLDGKREQSQLLGVRLRSEGKDYYAIRAEDGKFYDRNGTGLAKGFLRFPTAKQFRISSNFNPRRTNPVTGRVAPHRGVDFAMPQGTPVLSVGDGEVVVAKRSGAAGYYVAIRHGRSYTTRYMHLRKILVKPGQKVKRGDRIALSGNTGRSTGPHLHYEVWINQQAVNPLTAKLPRTEGLTGSDRREFLAQAKEIVPQLRFD	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG10013
Length:	440 (380)
Sequences:	4110 (3557)
Seq/√Len:	182.5

ECOLI - MEPM ENVC NLPD YGER
BACSU - LYTH SP4FA

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
327_V	363_L	4.569	1.00
296_S	320_A	4.304	1.00
363_L	381_A	4.102	1.00
338_A	366_I	4.072	1.00
385_N	389_S	3.810	1.00
367_L	382_L	3.438	1.00
321_M	383_S	3.389	1.00
329_S	350_I	3.277	1.00
298_N	408_L	2.993	1.00
352_H	358_T	2.932	1.00
287_F	319_F	2.854	1.00
332_D	375_K	2.818	1.00
299_F	404_A	2.794	1.00
247_Q	251_L	2.731	1.00
344_A	361_M	2.631	1.00
368_V	372_Q	2.616	1.00
286_R	376_R	2.484	1.00
326_P	379_R	2.421	1.00
250_L	254_R	2.419	1.00
248_S	252_G	2.397	1.00
45_A	49_V	2.299	1.00
334_E	373_K	2.242	1.00
249_Q	253_V	2.212	1.00
253_V	257_S	2.172	1.00
251_L	255_L	2.151	1.00
252_G	256_R	2.147	1.00
131_R	134_K	2.117	1.00
330_V	358_T	2.099	1.00
358_T	398_V	2.079	1.00
199_S	203_A	2.061	1.00
256_R	260_K	2.032	1.00
256_R	259_G	2.030	1.00
330_V	396_Y	1.966	1.00
255_L	259_G	1.950	1.00
305_N	308_T	1.925	1.00
323_Q	392_P	1.925	1.00
349_A	359_R	1.871	1.00
259_G	263_Y	1.864	1.00
253_V	256_R	1.858	1.00
247_Q	250_L	1.851	1.00
379_R	382_L	1.782	1.00
350_I	380_I	1.768	1.00
257_S	260_K	1.763	1.00
138_Q	142_T	1.757	1.00
192_V	196_F	1.744	1.00
254_R	258_E	1.714	1.00
294_R	320_A	1.709	1.00
336_V	357_T	1.707	1.00
301_P	313_P	1.677	1.00
308_T	388_R	1.662	1.00
318_D	395_H	1.661	1.00
251_L	254_R	1.658	1.00
148_E	152_L	1.644	1.00
305_N	312_A	1.641	1.00
262_Y	266_R	1.638	1.00
363_L	366_I	1.634	1.00
297_S	303_R	1.628	1.00
293_F	319_F	1.628	1.00
406_N	409_T	1.607	1.00
258_E	262_Y	1.602	1.00
198_A	201_R	1.599	1.00
120_I	127_D	1.595	1.00
368_V	378_D	1.594	1.00
375_K	378_D	1.593	1.00
361_M	397_E	1.566	1.00
258_E	261_D	1.555	1.00
315_R	397_E	1.550	1.00
261_D	265_I	1.547	1.00
239_E	242_D	1.533	1.00
300_N	313_P	1.531	1.00
263_Y	266_R	1.521	1.00
317_V	408_L	1.521	1.00
257_S	261_D	1.507	1.00
308_T	312_A	1.499	1.00
347_Y	361_M	1.485	1.00
343_A	361_M	1.483	1.00
327_V	383_S	1.482	1.00
323_Q	364_R	1.475	1.00
254_R	257_S	1.474	1.00
340_R	346_Y	1.458	1.00
336_V	351_R	1.455	1.00
346_Y	386_T	1.432	1.00
317_V	407_P	1.423	1.00
298_N	406_N	1.421	1.00
347_Y	359_R	1.413	1.00
103_G	107_S	1.411	1.00
348_V	380_I	1.410	1.00
156_V	160_E	1.409	1.00
134_K	142_T	1.406	1.00
195_S	198_A	1.405	1.00
264_A	267_A	1.391	1.00
178_M	182_E	1.389	1.00
248_S	251_L	1.365	1.00
255_L	258_E	1.359	1.00
349_A	357_T	1.348	1.00
263_Y	267_A	1.347	1.00
49_V	53_E	1.338	1.00
192_V	195_S	1.329	1.00
229_G	232_F	1.329	1.00
262_Y	265_I	1.325	1.00
260_K	264_A	1.322	1.00
252_G	255_L	1.318	1.00
383_S	394_L	1.315	1.00
335_V	368_V	1.288	1.00
328_L	379_R	1.282	1.00
100_V	103_G	1.278	1.00
148_E	153_T	1.276	1.00
399_W	404_A	1.276	1.00
241_L	244_K	1.263	1.00
297_S	314_H	1.246	1.00
51_T	55_E	1.245	1.00
123_L	126_A	1.244	1.00
228_K	232_F	1.244	1.00
39_Y	42_H	1.241	1.00
261_D	264_A	1.237	1.00
356_Y	400_I	1.234	1.00
209_E	212_A	1.233	1.00
318_D	393_H	1.232	1.00
199_S	202_N	1.231	1.00
56_Q	59_I	1.231	1.00
369_K	372_Q	1.230	1.00
344_A	359_R	1.225	1.00
235_L	239_E	1.215	1.00
364_R	382_L	1.211	1.00
259_G	262_Y	1.211	1.00
160_E	163_T	1.205	1.00
334_E	351_R	1.200	1.00
45_A	48_I	1.196	1.00
348_V	363_L	1.194	1.00
249_Q	252_G	1.193	1.00
317_V	411_K	1.192	1.00
246_E	250_L	1.191	1.00
134_K	143_L	1.177	1.00
167_T	171_G	1.172	1.00
94_G	98_Y	1.170	1.00
139_L	142_T	1.163	1.00
88_K	91_G	1.160	1.00
102_T	106_L	1.159	1.00
196_F	200_A	1.157	1.00
344_A	397_E	1.157	1.00
314_H	393_H	1.155	1.00
318_D	362_H	1.154	1.00
314_H	318_D	1.146	1.00
131_R	143_L	1.141	1.00
105_T	108_S	1.141	1.00
36_W	39_Y	1.141	1.00
338_A	368_V	1.141	1.00
140_S	143_L	1.136	1.00
149_L	154_W	1.136	1.00
367_L	381_A	1.134	1.00
56_Q	77_D	1.130	1.00
157_S	160_E	1.126	1.00
230_D	233_A	1.122	1.00
232_F	235_L	1.121	1.00
121_T	124_A	1.120	1.00
341_S	347_Y	1.118	1.00
87_D	91_G	1.109	1.00
260_K	263_Y	1.105	1.00
205_L	208_A	1.105	1.00
337_V	349_A	1.104	1.00
138_Q	143_L	1.100	1.00
102_T	105_T	1.098	1.00
323_Q	385_N	1.096	1.00
104_D	108_S	1.091	1.00
236_M	240_M	1.090	1.00
151_R	154_W	1.084	1.00
359_R	399_W	1.084	1.00
352_H	360_Y	1.080	1.00
241_L	245_R	1.079	1.00
60_R	63_L	1.074	1.00
331_G	376_R	1.072	1.00
365_K	382_L	1.069	1.00
229_G	233_A	1.068	1.00
206_T	209_E	1.066	1.00
351_R	355_S	1.065	1.00
44_D	48_I	1.064	1.00
48_I	56_Q	1.061	1.00
70_I	74_A	1.057	1.00
139_L	143_L	1.054	1.00
326_P	382_L	1.052	1.00
321_M	325_T	1.050	1.00
95_V	98_Y	1.044	1.00
53_E	56_Q	1.037	1.00
74_A	77_D	1.034	1.00
163_T	167_T	1.030	1.00
356_Y	398_V	1.030	1.00
233_A	237_S	1.027	1.00
181_G	188_L	1.026	1.00
77_D	81_P	1.026	1.00
234_V	238_R	1.024	1.00
238_R	242_D	1.023	1.00
349_A	399_W	1.022	1.00
50_K	53_E	1.013	0.99
385_N	392_P	1.012	0.99
337_V	347_Y	1.012	0.99
203_A	207_S	1.007	0.99
220_Q	223_F	1.007	0.99
147_G	151_R	1.006	0.99
230_D	234_V	1.005	0.99
62_L	65_E	1.004	0.99
287_F	293_F	0.998	0.99
30_T	33_V	0.994	0.99
330_V	360_Y	0.993	0.99
108_S	112_Q	0.993	0.99
35_V	38_P	0.987	0.99
116_D	120_I	0.986	0.99
217_M	220_Q	0.985	0.99
137_Q	142_T	0.982	0.99
219_W	222_D	0.978	0.99
84_E	88_K	0.976	0.99
46_T	50_K	0.973	0.99
56_Q	60_R	0.970	0.99
237_S	240_M	0.969	0.99
246_E	249_Q	0.966	0.99
114_G	117_M	0.957	0.99
385_N	390_T	0.956	0.99
135_I	143_L	0.952	0.99
113_Y	120_I	0.951	0.99
110_L	114_G	0.951	0.99
237_S	241_L	0.951	0.99
242_D	245_R	0.950	0.99
160_E	167_T	0.949	0.99
289_T	293_F	0.947	0.99
34_A	37_R	0.946	0.99
72_Q	76_E	0.943	0.99
123_L	127_D	0.942	0.99
321_M	324_G	0.939	0.99
57_N	61_S	0.938	0.99
236_M	239_E	0.937	0.99
33_V	36_W	0.934	0.99
195_S	199_S	0.932	0.99
155_E	160_E	0.932	0.99
137_Q	143_L	0.921	0.99
145_A	148_E	0.918	0.99
226_L	230_D	0.917	0.99
239_E	243_G	0.914	0.99
344_A	399_W	0.914	0.99
216_A	219_W	0.909	0.99
189_K	193_G	0.909	0.99
400_I	405_V	0.906	0.99
37_R	41_Y	0.906	0.99
157_S	164_Y	0.894	0.99
360_Y	396_Y	0.887	0.99
333_G	350_I	0.883	0.99
55_E	58_E	0.881	0.99
44_D	47_P	0.880	0.99
167_T	170_N	0.879	0.98
212_A	215_K	0.871	0.98
202_N	209_E	0.870	0.98
303_R	314_H	0.865	0.98
107_S	110_L	0.864	0.98
235_L	238_R	0.864	0.98
250_L	258_E	0.863	0.98
51_T	54_L	0.862	0.98
209_E	216_A	0.862	0.98
120_I	124_A	0.860	0.98
131_R	135_I	0.858	0.98
337_V	341_S	0.857	0.98
148_E	151_R	0.857	0.98
185_N	188_L	0.854	0.98
86_D	89_I	0.852	0.98
148_E	154_W	0.848	0.98
194_G	198_A	0.844	0.98
236_M	243_G	0.842	0.98
155_E	161_T	0.841	0.98
203_A	206_T	0.841	0.98
56_Q	69_P	0.841	0.98
184_V	187_L	0.836	0.98
315_R	404_A	0.836	0.98
65_E	69_P	0.832	0.98
34_A	38_P	0.831	0.98
367_L	379_R	0.831	0.98
188_L	192_V	0.829	0.98
361_M	399_W	0.829	0.98
297_S	318_D	0.828	0.98
116_D	119_D	0.828	0.98
74_A	78_E	0.827	0.98
164_Y	167_T	0.826	0.98
232_F	236_M	0.824	0.98
73_A	76_E	0.823	0.98
124_A	127_D	0.823	0.98
134_K	137_Q	0.823	0.98
206_T	210_V	0.820	0.98
235_L	240_M	0.820	0.98
362_H	387_G	0.819	0.98
70_I	77_D	0.819	0.98
134_K	139_L	0.819	0.98
180_Q	184_V	0.818	0.98
197_V	201_R	0.817	0.98
115_I	119_D	0.816	0.98
28_V	31_L	0.815	0.98
362_H	393_H	0.815	0.98
155_E	159_R	0.815	0.98
124_A	128_K	0.815	0.98
191_T	195_S	0.813	0.97
100_V	104_D	0.812	0.97
55_E	59_I	0.812	0.97
193_G	196_F	0.811	0.97
346_Y	366_I	0.810	0.97
278_T	282_K	0.805	0.97
131_R	142_T	0.804	0.97
109_I	113_Y	0.804	0.97
301_P	311_V	0.803	0.97
89_I	93_A	0.803	0.97
345_G	384_G	0.803	0.97
66_A	69_P	0.799	0.97
88_K	92_E	0.799	0.97
117_M	121_T	0.797	0.97
226_L	232_F	0.797	0.97
185_N	189_K	0.789	0.97
191_T	194_G	0.787	0.97
130_L	134_K	0.786	0.97
165_D	168_A	0.785	0.97
64_P	67_S	0.784	0.97
231_E	235_L	0.784	0.97
156_V	161_T	0.784	0.97
169_A	173_K	0.784	0.97
215_K	219_W	0.781	0.97
133_L	136_G	0.780	0.97
137_Q	141_W	0.779	0.97
159_R	167_T	0.775	0.97
144_T	148_E	0.774	0.97
43_R	46_T	0.774	0.97
363_L	394_L	0.774	0.97
274_D	278_T	0.774	0.97
319_F	408_L	0.773	0.97
248_S	255_L	0.772	0.97
201_R	205_L	0.770	0.97
182_E	186_N	0.766	0.96
131_R	140_S	0.765	0.96
155_E	167_T	0.764	0.96
344_A	349_A	0.759	0.96
47_P	51_T	0.757	0.96
150_Q	154_W	0.756	0.96
337_V	399_W	0.756	0.96
91_G	94_G	0.753	0.96
73_A	77_D	0.753	0.96
340_R	343_A	0.753	0.96
348_V	368_V	0.752	0.96
38_P	41_Y	0.752	0.96
118_G	122_Q	0.752	0.96
300_N	311_V	0.750	0.96
120_I	123_L	0.750	0.96
405_V	410_A	0.749	0.96
210_V	214_I	0.744	0.96
69_P	72_Q	0.743	0.96
181_G	185_N	0.742	0.96
343_A	388_R	0.741	0.96
285_L	356_Y	0.740	0.96
208_A	212_A	0.739	0.96
201_R	204_G	0.739	0.96
48_I	51_T	0.737	0.96
233_A	236_M	0.735	0.95
296_S	393_H	0.732	0.95
314_H	362_H	0.731	0.95
229_G	237_S	0.730	0.95
397_E	404_A	0.729	0.95
363_L	383_S	0.727	0.95
158_R	164_Y	0.726	0.95
31_L	34_A	0.726	0.95
298_N	317_V	0.724	0.95
155_E	158_R	0.724	0.95
299_F	313_P	0.723	0.95
196_F	199_S	0.723	0.95
205_L	209_E	0.721	0.95
96_H	100_V	0.721	0.95
320_A	391_G	0.720	0.95
308_T	311_V	0.719	0.95
161_T	164_Y	0.714	0.95
183_W	187_L	0.714	0.95
265_I	268_E	0.712	0.95
63_L	67_S	0.710	0.95
240_M	244_K	0.705	0.94
305_N	310_R	0.705	0.94
289_T	321_M	0.704	0.94
351_R	357_T	0.704	0.94
211_S	214_I	0.701	0.94
85_L	89_I	0.699	0.94
207_S	210_V	0.699	0.94
160_E	178_M	0.696	0.94
131_R	141_W	0.694	0.94
285_L	410_A	0.693	0.94
49_V	77_D	0.693	0.94
125_A	129_E	0.691	0.94
172_F	175_T	0.689	0.94
287_F	411_K	0.689	0.94
61_S	65_E	0.687	0.94
296_S	314_H	0.682	0.93
158_R	167_T	0.678	0.93
165_D	182_E	0.677	0.93
157_S	161_T	0.676	0.93
150_Q	153_T	0.676	0.93
307_V	388_R	0.675	0.93
306_P	309_G	0.674	0.93
165_D	169_A	0.673	0.93
62_L	66_A	0.671	0.93
340_R	386_T	0.671	0.93
149_L	153_T	0.669	0.93
383_S	392_P	0.668	0.93
314_H	395_H	0.668	0.93
43_R	47_P	0.666	0.92
356_Y	410_A	0.666	0.92
48_I	52_I	0.663	0.92
322_P	325_T	0.662	0.92
352_H	396_Y	0.662	0.92
57_N	60_R	0.660	0.92
240_M	243_G	0.659	0.92
250_L	253_V	0.658	0.92
137_Q	140_S	0.657	0.92
58_E	62_L	0.656	0.92
305_N	311_V	0.656	0.92
52_I	56_Q	0.654	0.92
339_K	366_I	0.650	0.92
46_T	49_V	0.649	0.91
342_G	389_S	0.649	0.91
106_L	113_Y	0.648	0.91
113_Y	117_M	0.645	0.91
318_D	391_G	0.643	0.91
198_A	202_N	0.643	0.91
306_P	390_T	0.642	0.91
52_I	70_I	0.641	0.91
159_R	163_T	0.640	0.91
335_V	338_A	0.638	0.91
366_I	381_A	0.638	0.91
37_R	40_V	0.637	0.91
135_I	138_Q	0.636	0.91
202_N	206_T	0.634	0.91
134_K	138_Q	0.634	0.91
147_G	153_T	0.634	0.91
59_I	63_L	0.634	0.91
340_R	366_I	0.633	0.90
256_R	261_D	0.633	0.90
314_H	391_G	0.632	0.90
338_A	346_Y	0.632	0.90
314_H	389_S	0.632	0.90
337_V	370_P	0.630	0.90
232_F	243_G	0.630	0.90
99_V	106_L	0.630	0.90
209_E	213_V	0.629	0.90
76_E	79_A	0.628	0.90
109_I	112_Q	0.628	0.90
95_V	99_V	0.624	0.90
358_T	396_Y	0.624	0.90
134_K	140_S	0.624	0.90
168_A	172_F	0.623	0.90
366_I	382_L	0.623	0.90
344_A	347_Y	0.620	0.90
199_S	212_A	0.619	0.89
30_T	35_V	0.618	0.89
145_A	150_Q	0.616	0.89
305_N	309_G	0.614	0.89
213_V	217_M	0.613	0.89
323_Q	383_S	0.612	0.89
219_W	223_F	0.612	0.89
60_R	64_P	0.610	0.89
122_Q	126_A	0.610	0.89
50_K	54_L	0.608	0.89
61_S	64_P	0.607	0.89
156_V	164_Y	0.607	0.89
285_L	331_G	0.605	0.88
341_S	344_A	0.604	0.88
45_A	80_I	0.604	0.88
158_R	161_T	0.604	0.88
38_P	42_H	0.600	0.88
131_R	138_Q	0.600	0.88
216_A	220_Q	0.600	0.88
265_I	269_D	0.599	0.88
284_F	331_G	0.599	0.88
362_H	395_H	0.598	0.88
278_T	281_A	0.598	0.88
266_R	269_D	0.598	0.88
172_F	176_S	0.598	0.88
396_Y	411_K	0.595	0.88
70_I	73_A	0.594	0.87
29_L	32_A	0.593	0.87
343_A	399_W	0.592	0.87
217_M	253_V	0.592	0.87
161_T	167_T	0.592	0.87
133_L	137_Q	0.591	0.87
175_T	179_Q	0.591	0.87
84_E	87_D	0.590	0.87
132_N	138_Q	0.590	0.87
202_N	216_A	0.590	0.87
362_H	386_T	0.589	0.87
214_I	217_M	0.585	0.87
332_D	376_R	0.585	0.87
114_G	118_G	0.585	0.87
234_V	237_S	0.581	0.86
156_V	170_N	0.579	0.86
338_A	341_S	0.579	0.86
116_D	124_A	0.578	0.86
116_D	127_D	0.576	0.86
112_Q	115_I	0.576	0.86
287_F	292_Q	0.571	0.85
289_T	319_F	0.571	0.85
245_R	249_Q	0.570	0.85
347_Y	399_W	0.567	0.85
384_G	393_H	0.566	0.85
248_S	256_R	0.565	0.85
295_I	298_N	0.560	0.84
145_A	154_W	0.559	0.84
359_R	397_E	0.558	0.84
138_Q	141_W	0.558	0.84
200_A	203_A	0.557	0.84
81_P	86_D	0.556	0.84
69_P	73_A	0.555	0.84
299_F	405_V	0.554	0.84
362_H	384_G	0.554	0.84
42_H	46_T	0.552	0.83
155_E	164_Y	0.552	0.83
335_V	350_I	0.552	0.83
156_V	167_T	0.551	0.83
135_I	141_W	0.549	0.83
101_S	105_T	0.549	0.83
190_G	193_G	0.547	0.83
41_Y	44_D	0.544	0.83
49_V	56_Q	0.541	0.82
177_E	180_Q	0.539	0.82
325_T	383_S	0.538	0.82
33_V	38_P	0.538	0.82
44_D	49_V	0.537	0.82
64_P	68_E	0.537	0.82
160_E	164_Y	0.535	0.82
34_A	39_Y	0.535	0.82
286_R	412_L	0.535	0.82
362_H	389_S	0.535	0.82
142_T	150_Q	0.533	0.81
281_A	331_G	0.531	0.81
56_Q	63_L	0.529	0.81
78_E	81_P	0.528	0.81
257_S	262_Y	0.527	0.81
98_Y	102_T	0.525	0.80
203_A	217_M	0.525	0.80
347_Y	404_A	0.524	0.80
145_A	151_R	0.524	0.80
314_H	387_G	0.523	0.80
86_D	90_A	0.523	0.80
66_A	70_I	0.523	0.80
107_S	111_N	0.522	0.80
255_L	262_Y	0.521	0.80
54_L	58_E	0.520	0.80
305_N	315_R	0.520	0.80
343_A	347_Y	0.520	0.80
86_D	93_A	0.519	0.80
162_R	167_T	0.519	0.80
270_G	273_Y	0.518	0.79
389_S	393_H	0.518	0.79
307_V	310_R	0.515	0.79
312_A	388_R	0.515	0.79
170_N	173_K	0.515	0.79
79_A	84_E	0.515	0.79
400_I	409_T	0.512	0.79
357_T	399_W	0.511	0.78
303_R	306_P	0.510	0.78
131_R	136_G	0.510	0.78
355_S	401_N	0.509	0.78
227_K	230_D	0.509	0.78
171_G	174_M	0.509	0.78
54_L	57_N	0.509	0.78
232_F	240_M	0.509	0.78
264_A	268_E	0.509	0.78
330_V	398_V	0.508	0.78
225_K	228_K	0.508	0.78
299_F	403_Q	0.506	0.78
390_T	393_H	0.505	0.78
156_V	163_T	0.504	0.78
362_H	391_G	0.502	0.77
229_G	240_M	0.500	0.77
158_R	165_D	0.500	0.77
289_T	325_T	0.500	0.77

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4rnzA	1	0.7545	100	0.467	Contact Map
2gu1A	1	0.7227	100	0.488	Contact Map
3sluA	1	0.7886	100	0.491	Contact Map
2hsiA	1	0.5205	100	0.555	Contact Map
4bh5A	4	0.2955	100	0.559	Contact Map
3tufB	1	0.3182	100	0.562	Contact Map
3nyyA	2	0.5205	100	0.594	Contact Map
4qp5A	1	0.2909	100	0.595	Contact Map
1qwyA	1	0.5045	100	0.595	Contact Map
4lxcA	4	0.3591	100	0.602	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0111 seconds.