PSPA - ECOLI - GREMLIN Contacts

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PSPA - Phage shock protein A

UniProt:	P0AFM6	Sequences: MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIKSLEHEVTLVDDTLARMKKEIGELENKLSETRARQQALMLRHQAANSSRDVRRQLDSGKLDEAMARFESFERRIDQMEAEAESHSFGKQKSLDDQFAELKADDAISEQLAQLKAKMKQDNQ	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG10776
Length:	222 (216)
Sequences:	1645 (1072)
Seq/√Len:	73.0

ECOLI - PSPA YJFJ
BACSU - PSPA LIAH

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
79_L	84_E	5.682	1.00
76_E	216_K	4.347	1.00
68_E	101_I	3.389	1.00
58_T	62_E	2.918	1.00
61_I	105_E	2.903	1.00
105_E	109_T	2.889	1.00
65_S	105_E	2.845	1.00
142_R	179_E	2.832	1.00
72_Q	76_E	2.809	1.00
88_R	207_S	2.704	1.00
31_L	35_E	2.682	1.00
150_R	181_E	2.578	1.00
208_E	211_A	2.513	1.00
94_K	209_Q	2.433	1.00
2_G	5_S	2.431	1.00
135_R	172_E	2.388	1.00
147_N	151_D	2.295	1.00
61_I	101_I	2.252	1.00
71_W	74_K	2.215	1.00
30_R	136_Q	2.115	1.00
84_E	214_K	2.107	1.00
70_E	74_K	2.082	1.00
54_K	112_D	2.072	1.00
76_E	213_L	1.972	1.00
76_E	80_L	1.971	1.00
61_I	65_S	1.967	1.00
44_R	126_E	1.956	1.00
211_A	215_A	1.947	1.00
65_S	101_I	1.927	1.00
109_T	113_D	1.918	1.00
37_E	133_R	1.878	1.00
6_R	23_E	1.862	1.00
212_Q	216_K	1.853	1.00
8_A	12_N	1.852	1.00
207_S	211_A	1.836	1.00
98_T	102_K	1.817	1.00
131_E	135_R	1.792	1.00
102_K	105_E	1.764	1.00
72_Q	212_Q	1.752	1.00
72_Q	216_K	1.720	1.00
68_E	98_T	1.715	1.00
31_L	34_Q	1.711	1.00
212_Q	215_A	1.702	1.00
146_A	182_A	1.681	1.00
47_S	118_M	1.645	1.00
75_A	213_L	1.644	1.00
14_N	27_K	1.625	0.99
207_S	217_M	1.604	0.99
69_V	73_E	1.547	0.99
209_Q	212_Q	1.546	0.99
113_D	117_R	1.534	0.99
177_Q	181_E	1.489	0.99
65_S	69_V	1.479	0.99
79_L	217_M	1.470	0.99
70_E	73_E	1.430	0.99
83_R	196_Q	1.420	0.99
197_F	200_L	1.410	0.99
198_A	201_K	1.405	0.98
61_I	108_V	1.402	0.98
30_R	140_M	1.393	0.98
197_F	201_K	1.352	0.98
54_K	115_L	1.346	0.98
20_E	23_E	1.340	0.98
95_Q	205_A	1.339	0.98
54_K	58_T	1.338	0.98
195_D	198_A	1.307	0.98
86_L	200_L	1.301	0.97
88_R	206_I	1.276	0.97
56_Q	60_R	1.268	0.97
193_L	196_Q	1.264	0.97
102_K	106_H	1.257	0.97
94_K	98_T	1.252	0.97
79_L	213_L	1.250	0.97
33_I	129_L	1.222	0.96
20_E	34_Q	1.220	0.96
47_S	122_I	1.220	0.96
99_D	102_K	1.219	0.96
35_E	38_D	1.214	0.96
80_L	217_M	1.210	0.96
22_A	27_K	1.207	0.96
192_S	195_D	1.201	0.96
112_D	116_A	1.192	0.96
76_E	217_M	1.160	0.95
66_A	70_E	1.149	0.95
79_L	214_K	1.133	0.94
12_N	35_E	1.099	0.93
121_E	124_E	1.085	0.93
139_L	175_I	1.071	0.93
68_E	94_K	1.071	0.93
13_A	17_A	1.070	0.93
143_H	147_N	1.069	0.92
62_E	65_S	1.059	0.92
58_T	108_V	1.051	0.92
127_N	131_E	1.045	0.92
85_D	196_Q	1.042	0.92
150_R	154_R	1.032	0.91
77_L	81_K	1.030	0.91
194_D	197_F	1.030	0.91
128_K	131_E	1.009	0.90
15_I	18_L	1.004	0.90
208_E	212_Q	0.991	0.89
164_A	168_F	0.988	0.89
17_A	27_K	0.987	0.89
73_E	76_E	0.987	0.89
62_E	66_A	0.985	0.89
71_W	93_E	0.964	0.88
111_V	115_L	0.960	0.88
170_S	173_R	0.954	0.87
28_L	31_L	0.944	0.87
125_L	132_T	0.944	0.87
92_I	96_K	0.940	0.87
64_A	97_L	0.939	0.87
191_K	196_Q	0.939	0.87
54_K	108_V	0.938	0.87
35_E	39_T	0.932	0.86
173_R	177_Q	0.932	0.86
75_A	91_L	0.930	0.86
140_M	144_Q	0.921	0.86
84_E	177_Q	0.912	0.85
26_Q	144_Q	0.877	0.83
10_I	29_V	0.874	0.82
93_E	96_K	0.872	0.82
24_D	27_K	0.872	0.82
17_A	21_K	0.871	0.82
13_A	28_L	0.870	0.82
11_V	18_L	0.868	0.82
29_V	168_F	0.864	0.82
150_R	182_A	0.861	0.81
72_Q	94_K	0.859	0.81
40_L	129_L	0.855	0.81
64_A	100_L	0.850	0.81
39_T	43_V	0.840	0.80
16_N	34_Q	0.837	0.80
9_D	12_N	0.833	0.79
19_L	23_E	0.819	0.78
123_G	127_N	0.819	0.78
15_I	22_A	0.812	0.78
13_A	21_K	0.810	0.77
91_L	94_K	0.805	0.77
195_D	199_E	0.800	0.76
106_H	211_A	0.799	0.76
99_D	205_A	0.798	0.76
71_W	90_A	0.787	0.75
18_L	22_A	0.786	0.75
60_R	63_Q	0.786	0.75
9_D	167_R	0.781	0.75
101_I	203_D	0.781	0.75
213_L	216_K	0.780	0.75
193_L	197_F	0.778	0.74
29_V	136_Q	0.776	0.74
67_R	97_L	0.775	0.74
74_K	77_L	0.774	0.74
116_A	120_K	0.774	0.74
52_A	193_L	0.765	0.73
196_Q	200_L	0.765	0.73
79_L	207_S	0.763	0.73
184_S	188_G	0.762	0.73
38_D	42_E	0.761	0.73
129_L	167_R	0.757	0.72
151_D	154_R	0.754	0.72
71_W	197_F	0.753	0.72
6_R	25_P	0.752	0.72
61_I	109_T	0.748	0.72
89_A	92_I	0.745	0.71
111_V	114_T	0.743	0.71
63_Q	69_V	0.743	0.71
9_D	136_Q	0.740	0.71
26_Q	128_K	0.733	0.70
47_S	50_A	0.733	0.70
3_I	15_I	0.731	0.70
26_Q	30_R	0.731	0.70
32_M	71_W	0.728	0.69
84_E	88_R	0.724	0.69
9_D	28_L	0.723	0.69
109_T	112_D	0.721	0.69
168_F	172_E	0.718	0.68
77_L	80_L	0.716	0.68
106_H	109_T	0.714	0.68
110_L	114_T	0.713	0.68
9_D	14_N	0.710	0.68
168_F	178_M	0.705	0.67
49_R	67_R	0.703	0.67
90_A	197_F	0.703	0.67
30_R	138_A	0.702	0.67
195_D	208_E	0.696	0.66
51_L	119_K	0.694	0.66
12_N	31_L	0.692	0.66
46_T	144_Q	0.690	0.65
154_R	173_R	0.689	0.65
48_A	56_Q	0.687	0.65
37_E	129_L	0.686	0.65
26_Q	132_T	0.682	0.64
86_L	196_Q	0.679	0.64
9_D	19_L	0.677	0.64
72_Q	79_L	0.674	0.64
29_V	36_M	0.673	0.63
157_D	160_K	0.673	0.63
107_E	111_V	0.670	0.63
40_L	56_Q	0.670	0.63
108_V	112_D	0.665	0.62
39_T	186_S	0.664	0.62
153_R	156_L	0.664	0.62
66_A	203_D	0.662	0.62
86_L	193_L	0.659	0.62
193_L	199_E	0.656	0.61
130_S	134_A	0.656	0.61
72_Q	98_T	0.652	0.61
210_L	214_K	0.651	0.61
91_L	95_Q	0.649	0.61
63_Q	116_A	0.647	0.60
213_L	217_M	0.643	0.60
64_A	104_L	0.643	0.60
63_Q	66_A	0.643	0.60
118_M	148_S	0.642	0.60
95_Q	209_Q	0.640	0.60
199_E	203_D	0.639	0.59
29_V	171_F	0.637	0.59
89_A	196_Q	0.637	0.59
64_A	101_I	0.636	0.59
68_E	103_S	0.634	0.59
75_A	184_S	0.633	0.59
33_I	37_E	0.633	0.59
83_R	86_L	0.632	0.59
74_K	144_Q	0.632	0.59
104_L	107_E	0.629	0.58
141_L	148_S	0.628	0.58
40_L	48_A	0.628	0.58
6_R	13_A	0.626	0.58
55_K	58_T	0.625	0.58
36_M	132_T	0.625	0.58
92_I	206_I	0.620	0.57
114_T	117_R	0.619	0.57
87_A	91_L	0.618	0.57
74_K	90_A	0.614	0.56
76_E	212_Q	0.609	0.56
58_T	112_D	0.608	0.56
72_Q	92_I	0.607	0.56
59_R	180_A	0.605	0.55
84_E	87_A	0.604	0.55
124_E	127_N	0.604	0.55
57_L	61_I	0.601	0.55
16_N	149_S	0.600	0.55
20_E	28_L	0.598	0.54
106_H	110_L	0.598	0.54
40_L	43_V	0.596	0.54
9_D	35_E	0.592	0.54
40_L	126_E	0.592	0.54
78_A	128_K	0.590	0.53
51_L	115_L	0.590	0.53
55_K	183_E	0.589	0.53
77_L	186_S	0.588	0.53
15_I	99_D	0.582	0.52
88_R	91_L	0.581	0.52
95_Q	206_I	0.580	0.52
25_P	90_A	0.579	0.52
99_D	103_S	0.579	0.52
56_Q	63_Q	0.572	0.51
19_L	22_A	0.572	0.51
192_S	196_Q	0.569	0.51
47_S	51_L	0.568	0.51
114_T	121_E	0.568	0.51
90_A	128_K	0.565	0.50
69_V	106_H	0.565	0.50
173_R	176_D	0.564	0.50
28_L	175_I	0.562	0.50
137_Q	146_A	0.561	0.50
39_T	153_R	0.561	0.50
14_N	22_A	0.560	0.50
50_A	167_R	0.559	0.50
178_M	181_E	0.559	0.50
182_A	185_H	0.559	0.50
65_S	109_T	0.558	0.50
174_R	177_Q	0.556	0.49
169_E	173_R	0.552	0.49
152_V	171_F	0.551	0.49
77_L	201_K	0.551	0.49
60_R	170_S	0.551	0.49
40_L	44_R	0.550	0.49
9_D	129_L	0.547	0.48
98_T	101_I	0.546	0.48
47_S	148_S	0.545	0.48
32_M	171_F	0.545	0.48
23_E	28_L	0.544	0.48
191_K	199_E	0.543	0.48
142_R	146_A	0.543	0.48
95_Q	203_D	0.540	0.47
205_A	208_E	0.540	0.47
133_R	173_R	0.539	0.47
194_D	198_A	0.538	0.47
196_Q	199_E	0.537	0.47
108_V	116_A	0.536	0.47
91_L	125_L	0.536	0.47
82_E	216_K	0.534	0.47
12_N	19_L	0.532	0.46
14_N	17_A	0.531	0.46
50_A	145_A	0.528	0.46
66_A	127_N	0.528	0.46
18_L	21_K	0.527	0.46
11_V	15_I	0.526	0.46
98_T	190_Q	0.525	0.45
143_H	171_F	0.524	0.45
101_I	105_E	0.523	0.45
6_R	19_L	0.522	0.45
33_I	136_Q	0.521	0.45
44_R	178_M	0.520	0.45
33_I	133_R	0.518	0.45
2_G	108_V	0.518	0.45
86_L	90_A	0.518	0.45
112_D	130_S	0.515	0.44
119_K	122_I	0.512	0.44
167_R	171_F	0.511	0.44
99_D	158_S	0.511	0.44
36_M	48_A	0.509	0.43
11_V	150_R	0.509	0.43
61_I	97_L	0.507	0.43
51_L	182_A	0.507	0.43
26_Q	71_W	0.505	0.43
63_Q	139_L	0.502	0.43
50_A	111_V	0.502	0.43
36_M	129_L	0.502	0.43
154_R	185_H	0.501	0.43
89_A	93_E	0.501	0.43
84_E	91_L	0.500	0.42
86_L	197_F	0.500	0.42

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1i84S	2	0.4369	92.5	0.887	Contact Map
2gd5A	2	0.7072	88.1	0.898	Contact Map
3frtA	1	0.6396	87.6	0.898	Contact Map
3ghgA	2	0.6982	86.9	0.899	Contact Map
4abmA	2	0.3559	81.5	0.906	Contact Map
3ojaB	1	0.5946	80.6	0.907	Contact Map
1deqA	1	0.7387	74.5	0.912	Contact Map
1c1gA	2	0.9459	71.7	0.914	Contact Map
4iloA	3	0.7207	71.5	0.914	Contact Map
3mq9A	4	0.5541	66	0.917	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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