GREMLIN Database
ODO1 - 2-oxoglutarate dehydrogenase E1 component
UniProt: P0AFG3 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG10979
Length: 933 (892)
Sequences: 2249 (1161)
Seq/√Len: 38.9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
136_Q154_G5.2031.00
734_L776_M5.1731.00
815_K839_D4.8941.00
831_Q835_N4.8911.00
749_C760_M4.7761.00
665_L716_M4.6711.00
702_S746_M4.2951.00
387_V409_T4.2901.00
672_A712_C4.2321.00
420_F433_V4.2311.00
268_V278_L4.1631.00
690_A737_Y4.1281.00
818_V872_C3.8801.00
697_I716_M3.7881.00
557_L602_A3.7821.00
180_E446_R3.5711.00
259_A388_I3.5061.00
741_C746_M3.4851.00
859_V862_Q3.3971.00
613_L654_V3.3801.00
804_G859_V3.3351.00
232_G454_C3.3261.00
200_K494_E3.3121.00
187_R439_D3.3031.00
824_V827_D3.3001.00
235_L388_I3.2931.00
420_F448_V3.2131.00
569_E634_S3.1521.00
475_Q634_S3.1071.00
259_A354_I3.0911.00
499_L503_T3.0581.00
168_I433_V2.9791.00
252_R348_K2.9291.00
304_D313_H2.9211.00
197_S201_K2.8971.00
325_I700_F2.8941.00
489_D493_Q2.8781.00
922_Q926_V2.8401.00
347_N445_K2.7801.00
549_V603_T2.7591.00
644_H649_Q2.7421.00
481_P489_D2.7341.00
816_R868_D2.7131.00
741_C748_V2.6801.00
813_G838_H2.6271.00
619_G656_D2.6261.00
734_L881_A2.5991.00
551_M555_Q2.5851.00
170_A188_I2.5501.00
331_I380_V2.5171.00
424_A454_C2.5151.00
180_E440_F2.5141.00
701_I716_M2.5051.00
760_M775_V2.5041.00
924_D928_D2.5031.00
167_P426_D2.4951.00
817_V866_V2.4901.00
504_E508_L2.4791.00
245_H439_D2.4441.00
179_E443_T2.4181.00
485_K489_D2.4151.00
614_S664_V2.4151.00
211_E482_T2.4141.00
845_I885_S2.3861.00
242_M384_V2.3851.00
734_L821_S2.3751.00
845_I848_L2.3741.00
754_P788_V2.3681.00
365_V662_E2.3561.00
831_Q834_K2.3551.00
817_V860_L2.3031.00
840_V930_L2.3031.00
553_R606_D2.2971.00
810_D813_G2.2941.00
820_C824_V2.2861.00
915_M919_Q2.2561.00
819_M856_M2.2470.99
557_L603_T2.2410.99
325_I696_V2.2400.99
717_L775_V2.2290.99
426_D429_A2.2190.99
811_P862_Q2.2180.99
503_T507_N2.1940.99
818_V929_A2.1930.99
372_M658_V2.1890.99
818_V842_I2.1800.99
239_L266_V2.1720.99
607_E766_L2.1690.99
327_S353_T2.1680.99
830_E834_K2.1620.99
747_Q767_R2.1550.99
152_K155_E2.1500.99
824_V872_C2.1250.99
238_M434_T2.1180.99
208_T484_R2.0980.99
610_P650_G2.0900.99
692_G695_V2.0790.99
666_A696_V2.0720.99
238_M386_I2.0640.99
609_I765_A2.0310.99
749_C775_V2.0170.99
468_A624_F2.0130.99
923_Q927_N2.0050.99
824_V925_L1.9960.99
800_L803_I1.9930.99
108_N167_P1.9760.99
786_L833_R1.9540.99
831_Q930_L1.9470.99
412_G449_F1.9200.98
740_L746_M1.9200.98
801_P855_A1.9150.98
428_E487_Y1.9140.98
835_N927_N1.9130.98
828_L842_I1.9130.98
705_E771_R1.9090.98
334_V351_P1.9080.98
238_M430_V1.9070.98
851_F885_S1.9000.98
30_F46_Q1.8890.98
239_L354_I1.8880.98
325_I662_E1.8870.98
498_T501_D1.8680.98
139_F153_L1.8570.98
732_A776_M1.8520.98
681_I717_L1.8450.98
549_V554_L1.8390.98
177_S180_E1.8230.98
199_E435_R1.8100.98
360_V449_F1.8090.98
780_S823_K1.8090.98
716_M774_V1.8040.98
751_P760_M1.7820.97
596_A794_L1.7750.97
922_Q925_L1.7740.97
490_K494_E1.7640.97
748_V776_M1.7630.97
358_A393_G1.7530.97
184_I420_F1.7510.97
790_S793_E1.7470.97
372_M663_A1.7240.97
33_D36_S1.7030.97
781_L826_Y1.7010.96
868_D900_R1.6990.96
823_K922_Q1.6980.96
29_D36_S1.6970.96
575_A579_G1.6950.96
110_D114_L1.6900.96
196_N199_E1.6880.96
778_P823_K1.6850.96
845_I856_M1.6760.96
489_D499_L1.6730.96
829_L842_I1.6690.96
579_G582_Q1.6650.96
242_M352_I1.6640.96
378_Y614_S1.6630.96
912_V921_Q1.6580.96
465_E468_A1.6510.96
601_Y757_V1.6450.96
42_R46_Q1.6380.96
367_Q616_E1.6370.96
886_Q890_R1.6280.95
246_A438_L1.6280.95
331_I369_T1.6130.95
235_L386_I1.6080.95
631_H638_T1.6020.95
786_L830_E1.6000.95
302_S313_H1.5970.95
568_V630_I1.5950.95
365_V663_A1.5930.95
200_K428_E1.5850.95
507_N511_D1.5730.95
613_L681_I1.5710.94
628_A652_F1.5700.94
187_R443_T1.5680.94
480_H486_I1.5670.94
138_T150_T1.5640.94
564_V570_M1.5630.94
628_A654_V1.5540.94
235_L266_V1.5490.94
757_V760_M1.5460.94
371_N658_V1.5270.94
148_K155_E1.5260.94
425_D480_H1.5220.93
548_K798_T1.5180.93
235_L354_I1.5180.93
578_Y630_I1.5140.93
548_K795_A1.5090.93
302_S710_R1.5040.93
549_V553_R1.5000.93
727_P909_S1.4970.93
646_H649_Q1.4960.93
717_L777_S1.4930.93
803_I806_I1.4930.93
363_Q692_G1.4860.93
372_M380_V1.4820.93
358_A402_A1.4790.92
750_V874_E1.4790.92
367_Q414_M1.4670.92
125_P135_F1.4650.92
902_A928_D1.4650.92
241_E435_R1.4570.92
579_G583_A1.4560.92
112_L473_M1.4540.92
276_Q516_G1.4490.92
92_V139_F1.4460.92
890_R898_S1.4440.92
843_V859_V1.4340.91
554_L791_L1.4290.91
176_T416_Q1.4280.91
602_A606_D1.4260.91
926_V930_L1.4220.91
790_S794_L1.4210.91
467_S478_K1.4190.91
174_H419_I1.4160.91
804_G863_F1.4110.91
741_C849_Y1.4110.91
559_K582_Q1.4100.91
26_L29_D1.4090.91
723_E780_S1.4070.90
221_F283_A1.4040.90
201_K501_D1.3960.90
877_L887_H1.3870.90
424_A452_L1.3840.90
370_L415_V1.3840.90
662_E695_V1.3820.90
632_N635_N1.3810.90
584_M595_G1.3790.90
786_L829_L1.3790.90
807_D833_R1.3730.89
203_F431_A1.3730.89
533_W770_R1.3700.89
235_L452_L1.3690.89
665_L690_A1.3650.89
585_A595_G1.3640.89
158_E162_Q1.3630.89
723_E823_K1.3610.89
817_V843_V1.3580.89
669_Y704_G1.3580.89
603_T758_Y1.3550.89
476_K479_K1.3550.89
629_V640_T1.3450.88
559_K586_A1.3440.88
583_A587_G1.3440.88
213_L278_L1.3420.88
432_F436_L1.3420.88
353_T385_R1.3380.88
106_H161_K1.3360.88
859_V863_F1.3340.88
155_E158_E1.3330.88
819_M845_I1.3320.88
598_N601_Y1.3310.88
919_Q923_Q1.3290.88
610_P678_T1.3230.88
88_K130_L1.3220.87
618_S654_V1.3210.87
138_T152_K1.3180.87
237_P431_A1.3180.87
132_E154_G1.3150.87
559_K563_T1.3140.87
206_E209_A1.3130.87
167_P429_A1.3110.87
386_I452_L1.3100.87
492_E498_T1.3090.87
341_L349_V1.3090.87
750_V821_S1.2990.87
88_K134_D1.2920.86
872_C929_A1.2780.86
551_M792_E1.2780.86
252_R310_G1.2780.86
218_G228_S1.2770.86
814_V863_F1.2720.85
557_L606_D1.2710.85
249_S438_L1.2700.85
417_A449_F1.2690.85
126_S132_E1.2660.85
591_F790_S1.2650.85
703_S727_P1.2630.85
234_A430_V1.2620.85
848_L881_A1.2620.85
823_K874_E1.2610.85
917_V921_Q1.2600.85
242_M434_T1.2590.85
609_I766_L1.2540.85
330_V353_T1.2530.84
591_F595_G1.2480.84
366_V616_E1.2460.84
825_Y829_L1.2410.84
232_G424_A1.2400.84
533_W713_G1.2360.84
690_A697_I1.2340.84
273_K281_E1.2320.83
754_P826_Y1.2300.83
209_A512_A1.2290.83
306_Q311_L1.2280.83
702_S740_L1.2270.83
511_D515_A1.2250.83
343_E346_S1.2240.83
492_E500_E1.2210.83
573_R624_F1.2180.83
820_C842_I1.2140.83
818_V870_V1.2100.82
304_D311_L1.2090.82
230_E458_H1.2050.82
211_E485_K1.2030.82
877_L906_A1.2020.82
151_M155_E1.1990.82
842_I872_C1.1940.81
820_C825_Y1.1940.81
353_T383_T1.1920.81
837_Q840_V1.1880.81
200_K490_K1.1870.81
232_G388_I1.1830.81
751_P756_Q1.1790.81
755_A800_L1.1750.80
206_E240_K1.1730.80
202_R240_K1.1710.80
492_E502_A1.1700.80
594_G625_H1.1680.80
55_P58_F1.1670.80
819_M889_F1.1560.79
484_R502_A1.1490.79
815_K837_Q1.1470.79
569_E632_N1.1430.79
866_V869_F1.1420.78
662_E692_G1.1380.78
722_Y876_P1.1370.78
246_A350_L1.1360.78
135_F154_G1.1340.78
821_S881_A1.1340.78
259_A325_I1.1310.78
139_F156_L1.1280.78
639_Y644_H1.1270.78
925_L928_D1.1260.77
251_T350_L1.1180.77
213_L268_V1.1150.77
377_G614_S1.1140.77
375_A658_V1.1140.77
249_S439_D1.1130.77
246_A442_N1.1110.76
591_F794_L1.1100.76
475_Q479_K1.1060.76
239_L452_L1.1040.76
829_L833_R1.1020.76
377_G655_W1.0970.76
122_D128_H1.0970.76
328_P365_V1.0950.75
31_L49_P1.0950.75
420_F436_L1.0940.75
243_I254_V1.0940.75
352_I434_T1.0920.75
497_A502_A1.0910.75
605_V652_F1.0910.75
784_H788_V1.0850.75
723_E778_P1.0840.75
547_N763_R1.0830.75
203_F428_E1.0820.75
742_A849_Y1.0820.75
619_G629_V1.0810.74
699_Q728_E1.0790.74
457_R482_T1.0770.74
210_A229_L1.0760.74
97_N101_F1.0760.74
275_P509_Y1.0760.74
717_L757_V1.0760.74
560_R563_T1.0750.74
204_L497_A1.0750.74
819_M869_F1.0740.74
313_H710_R1.0730.74
481_P486_I1.0730.74
613_L618_S1.0730.74
556_E560_R1.0720.74
912_V917_V1.0700.74
254_V352_I1.0690.74
706_Q743_E1.0650.73
551_M795_A1.0630.73
679_L715_V1.0540.73
722_Y730_S1.0540.73
877_L901_Y1.0490.72
236_I270_V1.0470.72
805_E829_L1.0460.72
339_D671_Y1.0410.72
869_F889_F1.0390.71
877_L903_G1.0350.71
562_S582_Q1.0350.71
625_H777_S1.0340.71
57_Q60_S1.0320.71
801_P847_Q1.0300.71
568_V578_Y1.0290.71
378_Y667_F1.0290.71
282_F296_K1.0260.71
907_S910_P1.0240.70
585_A591_F1.0230.70
271_L314_L1.0200.70
363_Q660_S1.0200.70
872_C902_A1.0190.70
434_T450_I1.0160.70
257_G326_V1.0150.70
248_N308_D1.0140.70
793_E821_S1.0140.70
841_A863_F1.0140.70
305_F314_L1.0140.70
816_R840_V1.0130.70
411_I616_E1.0130.70
334_V338_L1.0110.69
713_G770_R1.0110.69
533_W536_Y1.0090.69
39_A43_S1.0070.69
580_D583_A1.0070.69
757_V775_V1.0050.69
805_E809_L1.0030.69
29_D38_D1.0020.69
723_E922_Q1.0010.69
455_Y482_T0.9990.68
195_F203_F0.9940.68
482_T485_K0.9940.68
492_E499_L0.9930.68
803_I843_V0.9920.68
184_I433_V0.9910.68
616_E714_L0.9910.68
95_L157_L0.9890.68
302_S533_W0.9880.68
268_V275_P0.9870.68
625_H757_V0.9830.67
184_I188_I0.9830.67
255_V334_V0.9820.67
339_D653_R0.9810.67
555_Q586_A0.9800.67
823_K827_D0.9800.67
743_E884_C0.9790.67
334_V349_V0.9780.67
817_V869_F0.9780.67
675_E678_T0.9770.67
848_L884_C0.9760.67
178_T182_R0.9760.67
367_Q371_N0.9750.67
848_L885_S0.9750.67
327_S666_A0.9750.67
554_L599_L0.9750.67
545_Y766_L0.9740.66
488_A502_A0.9730.66
794_L798_T0.9730.66
809_L838_H0.9720.66
737_Y741_C0.9720.66
811_P864_A0.9710.66
831_Q927_N0.9690.66
804_G862_Q0.9660.66
398_N656_D0.9650.66
224_A228_S0.9650.66
751_P775_V0.9630.66
681_I777_S0.9620.65
916_S919_Q0.9600.65
197_S501_D0.9590.65
110_D419_I0.9590.65
643_Q652_F0.9590.65
645_I649_Q0.9580.65
812_K865_H0.9560.65
885_S889_F0.9550.65
866_V897_A0.9540.65
241_E431_A0.9520.65
663_A692_G0.9500.65
596_A757_V0.9500.65
596_A787_A0.9500.65
533_W676_P0.9490.64
686_F725_Q0.9480.64
809_L814_V0.9480.64
583_A586_A0.9470.64
30_F42_R0.9460.64
371_N414_M0.9460.64
780_S922_Q0.9460.64
440_F446_R0.9450.64
819_M860_L0.9440.64
202_R244_R0.9440.64
492_E497_A0.9420.64
723_E742_A0.9400.64
439_D443_T0.9390.64
722_Y918_H0.9390.64
753_T826_Y0.9380.64
665_L701_I0.9380.64
605_V645_I0.9360.63
601_Y625_H0.9330.63
125_P129_D0.9320.63
722_Y879_Q0.9280.63
257_G330_V0.9270.63
234_A483_P0.9270.63
577_I624_F0.9260.62
673_T712_C0.9250.62
855_A858_E0.9240.62
717_L778_P0.9220.62
812_K864_A0.9210.62
857_Q861_Q0.9200.62
754_P784_H0.9190.62
247_G309_G0.9180.62
550_E796_N0.9160.62
606_D645_I0.9160.62
609_I650_G0.9160.62
902_A925_L0.9150.62
594_G803_I0.9150.62
552_K555_Q0.9120.61
26_L38_D0.9120.61
162_Q192_R0.9120.61
554_L794_L0.9090.61
604_L607_E0.9080.61
370_L449_F0.9080.61
851_F892_V0.9080.61
807_D842_I0.9060.61
245_H435_R0.9050.61
386_I434_T0.9040.61
690_A740_L0.9040.61
619_G631_H0.9010.60
810_D814_V0.9010.60
405_T414_M0.8990.60
204_L208_T0.8990.60
380_V383_T0.8980.60
223_G742_A0.8980.60
91_K94_Q0.8970.60
749_C777_S0.8940.60
27_Y31_L0.8940.60
341_L348_K0.8940.60
438_L442_N0.8920.60
387_V449_F0.8910.59
900_R928_D0.8900.59
500_E504_E0.8890.59
253_E349_V0.8880.59
831_Q926_V0.8880.59
184_I448_V0.8860.59
831_Q923_Q0.8850.59
243_I312_V0.8840.59
307_T310_G0.8830.59
681_I757_V0.8820.59
879_Q909_S0.8810.59
550_E795_A0.8800.59
353_T666_A0.8770.58
819_M843_V0.8760.58
805_E832_R0.8740.58
583_A588_E0.8730.58
153_L156_L0.8730.58
518_C522_E0.8700.58
465_E478_K0.8680.57
512_A516_G0.8670.57
827_D922_Q0.8660.57
885_S888_H0.8640.57
893_I899_L0.8630.57
350_L438_L0.8630.57
327_S383_T0.8630.57
869_F899_L0.8620.57
792_E796_N0.8610.57
533_W767_R0.8610.57
465_E571_Q0.8600.57
182_R186_Q0.8590.57
56_D59_H0.8580.57
331_I353_T0.8580.57
858_E862_Q0.8570.56
465_E573_R0.8550.56
573_R592_D0.8540.56
484_R506_V0.8530.56
832_R842_I0.8530.56
723_E777_S0.8520.56
39_A42_R0.8520.56
662_E696_V0.8510.56
870_V900_R0.8510.56
553_R556_E0.8510.56
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365_V696_V0.5490.30
409_T415_V0.5490.30
227_F281_E0.5490.30
515_A637_S0.5480.30
167_P191_G0.5480.30
30_F635_N0.5470.30
89_Q139_F0.5470.30
99_Y644_H0.5470.30
352_I486_I0.5470.30
609_I678_T0.5470.30
26_L246_A0.5460.30
208_T478_K0.5460.30
169_G407_Y0.5460.30
673_T704_G0.5460.30
813_G900_R0.5460.30
717_L823_K0.5460.30
133_A663_A0.5460.30
35_D39_A0.5450.30
387_V417_A0.5450.30
171_E743_E0.5450.30
802_A843_V0.5450.30
317_A330_V0.5450.30
169_G433_V0.5440.30
614_S663_A0.5430.29
199_E244_R0.5430.29
425_D483_P0.5430.29
144_F156_L0.5430.29
753_T800_L0.5430.29
224_A281_E0.5420.29
396_T401_D0.5420.29
233_D238_M0.5420.29
628_A692_G0.5420.29
214_E296_K0.5410.29
388_I424_A0.5410.29
162_Q314_L0.5410.29
238_M636_G0.5410.29
365_V665_L0.5410.29
668_E821_S0.5410.29
184_I371_N0.5400.29
152_K197_S0.5400.29
577_I598_N0.5400.29
388_I747_Q0.5400.29
172_Y178_T0.5400.29
135_F157_L0.5390.29
352_I879_Q0.5390.29
314_L699_Q0.5390.29
554_L591_F0.5390.29
614_S618_S0.5390.29
639_Y649_Q0.5380.29
497_A505_M0.5380.29
574_V750_V0.5370.29
29_D37_V0.5370.29
281_E296_K0.5370.29
632_N921_Q0.5360.29
410_D413_K0.5360.29
830_E843_V0.5360.29
550_E611_V0.5360.29
660_S692_G0.5350.29
575_A888_H0.5350.29
810_D899_L0.5350.29
282_F297_Y0.5350.29
500_E503_T0.5340.29
539_H769_M0.5340.29
84_D701_I0.5330.29
452_L523_W0.5330.29
630_I656_D0.5330.29
214_E297_Y0.5320.29
22_W29_D0.5320.29
271_L427_P0.5320.29
405_T903_G0.5320.29
792_E795_A0.5310.29
835_N926_V0.5310.29
814_V817_V0.5310.29
820_C871_W0.5300.28
920_K923_Q0.5300.28
723_E849_Y0.5300.28
552_K812_K0.5290.28
79_T83_P0.5280.28
549_V794_L0.5280.28
168_I242_M0.5280.28
275_P536_Y0.5280.28
172_Y280_D0.5270.28
805_E842_I0.5270.28
605_V649_Q0.5270.28
101_F173_M0.5270.28
256_L402_A0.5260.28
266_V354_I0.5260.28
109_L114_L0.5260.28
750_V757_V0.5260.28
901_Y905_P0.5250.28
225_K686_F0.5250.28
341_L631_H0.5250.28
296_K300_G0.5250.28
81_S85_T0.5250.28
110_D123_L0.5250.28
325_I365_V0.5250.28
508_L511_D0.5240.28
269_N275_P0.5240.28
806_I832_R0.5240.28
28_E39_A0.5240.28
36_S550_E0.5230.28
244_R308_D0.5230.28
380_V629_V0.5230.28
754_P789_S0.5220.28
42_R278_L0.5220.28
548_K603_T0.5210.28
703_S820_C0.5210.28
371_N404_S0.5210.28
776_M821_S0.5200.28
479_K556_E0.5200.28
755_A758_Y0.5200.28
365_V839_D0.5200.28
637_S805_E0.5200.28
60_S603_T0.5190.28
197_S494_E0.5190.28
166_G851_F0.5190.28
316_L424_A0.5190.28
213_L510_R0.5190.28
110_D449_F0.5190.28
446_R737_Y0.5180.28
169_G696_V0.5180.28
573_R577_I0.5180.28
33_D335_R0.5180.28
91_K130_L0.5180.28
269_N300_G0.5180.28
472_L475_Q0.5180.28
556_E646_H0.5180.28
631_H640_T0.5170.28
88_K228_S0.5160.27
208_T212_G0.5160.27
430_V696_V0.5160.27
504_E561_I0.5160.27
480_H483_P0.5160.27
903_G928_D0.5150.27
112_L402_A0.5150.27
305_F308_D0.5150.27
793_E830_E0.5150.27
361_T367_Q0.5150.27
315_A592_D0.5150.27
186_Q443_T0.5140.27
424_A523_W0.5140.27
359_A776_M0.5140.27
815_K862_Q0.5130.27
370_L436_L0.5130.27
490_K493_Q0.5130.27
666_A879_Q0.5130.27
555_Q602_A0.5130.27
618_S777_S0.5130.27
868_D893_I0.5120.27
304_D533_W0.5120.27
804_G843_V0.5120.27
207_L775_V0.5120.27
248_N511_D0.5110.27
353_T360_V0.5110.27
228_S872_C0.5110.27
152_K585_A0.5110.27
227_F296_K0.5110.27
325_I387_V0.5100.27
654_V713_G0.5100.27
465_E784_H0.5100.27
53_V58_F0.5090.27
747_Q769_M0.5090.27
128_H803_I0.5090.27
521_A640_T0.5090.27
239_L352_I0.5090.27
619_G655_W0.5090.27
554_L585_A0.5090.27
100_R669_Y0.5090.27
239_L865_H0.5080.27
811_P863_F0.5080.27
200_K487_Y0.5080.27
816_R900_R0.5070.27
181_K361_T0.5070.27
114_L400_L0.5070.27
316_L695_V0.5070.27
328_P696_V0.5070.27
784_H830_E0.5060.27
536_Y711_M0.5060.27
686_F782_L0.5060.27
744_Q927_N0.5060.27
360_V411_I0.5060.27
593_W823_K0.5050.27
581_R681_I0.5050.27
805_E833_R0.5050.27
488_A506_V0.5040.27
218_G222_P0.5040.27
32_T902_A0.5040.27
819_M848_L0.5040.27
375_A379_E0.5040.27
110_D467_S0.5030.27
871_W874_E0.5030.27
760_M900_R0.5020.26
814_V841_A0.5020.26
568_V638_T0.5010.26
378_Y447_D0.5010.26
240_K244_R0.5010.26
266_V282_F0.5000.26
690_A732_A0.5000.26
46_Q50_G0.5000.26
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2jgdA 2 0.8789 100 0.414 Contact Map
2xt6A 2 0.9389 100 0.438 Contact Map
2yicA 2 0.8521 100 0.444 Contact Map
1itzA 2 0.6688 100 0.853 Contact Map
3l84A 2 0.6217 100 0.857 Contact Map
3komA 2 0.6259 100 0.857 Contact Map
4c7vA 2 0.6538 100 0.859 Contact Map
3uk1A 2 0.6345 100 0.861 Contact Map
2r8oA 2 0.6527 100 0.863 Contact Map
3rimA 2 0.686 100 0.864 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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