NUPC - ECOLI - GREMLIN Contacts

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NUPC - Nucleoside permease NupC

UniProt:	P0AFF2	Sequences: MDRVLHFVLALAVVAILALLVSSDRKKIRIRYVIQLLVIEVLLAWFFLNSDVGLGFVKGFSEMFEKLLGFANEGTNFVFGSMNDQGLAFFFLKVLCPIVFISALIGILQHIRVLPVIIRAIGFLLSKVNGMGKLESFNAVSSLILGQSENFIAYKDILGKISRNRMYTMAATAMSTVSMSIVGAYMTMLEPKYVVAALVLNMFSTFIVLSLINPYRVDASEENIQMSNLHEGQSFFEMLGEYILAGFKVAIIVAAMLIGFIALIAALNALFATVTGWFGYSISFQGILGYIFYPIAWVMGVPSSEALQVGSIMATKLVSNEFVAMMDLQKIASTLSPRAEGIISVFLVSFANFSSIGIIAGAVKGLNEEQGNVVSRFGLKLVYGSTLVSVLSASIAALVL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG11971
Length:	400 (396)
Sequences:	1656 (931)
Seq/√Len:	46.8

ECOLI - NUPC PSUT NUPX
BACSU - YUTK NUPC NUPG

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
70_F	269_A	5.002	1.00
305_E	336_S	4.523	1.00
303_S	306_A	4.328	1.00
370_Q	373_V	3.912	1.00
268_N	285_Q	3.847	1.00
285_Q	327_D	3.779	1.00
24_D	27_K	3.734	1.00
98_I	253_V	3.684	1.00
327_D	330_K	3.515	1.00
168_T	206_F	3.323	1.00
309_V	343_I	3.304	1.00
23_S	380_K	3.268	1.00
163_R	376_R	2.992	1.00
154_Y	161_I	2.985	1.00
275_T	282_I	2.907	1.00
309_V	339_A	2.876	1.00
21_V	383_Y	2.845	1.00
13_V	298_V	2.795	1.00
78_V	258_I	2.733	1.00
11_L	391_L	2.677	1.00
299_M	390_V	2.639	1.00
247_F	251_I	2.632	1.00
116_V	120_A	2.596	1.00
379_L	383_Y	2.578	1.00
19_L	25_R	2.519	1.00
23_S	213_N	2.497	1.00
204_S	388_V	2.483	1.00
36_L	207_I	2.455	1.00
107_I	235_F	2.423	1.00
58_K	62_E	2.379	1.00
159_G	369_E	2.339	1.00
158_L	367_N	2.317	1.00
353_F	379_L	2.284	1.00
315_T	327_D	2.271	1.00
243_I	259_G	2.262	1.00
18_A	211_L	2.238	1.00
110_H	232_G	2.158	1.00
111_I	235_F	2.057	1.00
328_L	338_R	2.040	0.99
23_S	163_R	2.034	0.99
67_L	104_L	2.033	0.99
244_L	252_I	2.031	0.99
18_A	208_V	2.022	0.99
107_I	239_L	2.011	0.99
299_M	394_S	1.994	0.99
193_Y	345_V	1.989	0.99
141_S	153_A	1.988	0.99
293_Y	310_G	1.949	0.99
73_E	76_N	1.945	0.99
249_V	252_I	1.882	0.99
72_N	93_K	1.855	0.99
239_L	263_L	1.852	0.99
201_N	392_S	1.840	0.99
212_I	384_G	1.832	0.99
52_V	56_F	1.816	0.99
351_A	389_S	1.810	0.99
163_R	373_V	1.808	0.99
135_E	210_S	1.764	0.98
8_V	12_A	1.764	0.98
345_V	392_S	1.754	0.98
212_I	383_Y	1.741	0.98
131_M	136_S	1.721	0.98
45_W	399_V	1.686	0.98
286_G	290_Y	1.677	0.98
317_L	386_T	1.675	0.98
248_K	251_I	1.669	0.98
284_F	288_L	1.655	0.98
162_S	215_Y	1.642	0.98
6_H	297_W	1.637	0.98
46_F	50_S	1.635	0.98
201_N	204_S	1.622	0.97
147_Q	355_S	1.606	0.97
120_A	123_F	1.606	0.97
274_V	278_F	1.602	0.97
164_N	215_Y	1.600	0.97
148_S	249_V	1.579	0.97
122_G	133_K	1.566	0.97
18_A	387_L	1.546	0.96
166_M	373_V	1.541	0.96
101_I	145_L	1.538	0.96
112_R	115_P	1.535	0.96
95_L	254_A	1.530	0.96
262_A	354_S	1.528	0.96
34_I	38_V	1.521	0.96
21_V	212_I	1.520	0.96
33_V	207_I	1.512	0.96
124_L	128_V	1.510	0.96
81_S	86_G	1.510	0.96
331_I	334_T	1.502	0.96
106_G	110_H	1.501	0.96
147_Q	359_I	1.500	0.96
24_D	216_R	1.462	0.95
351_A	386_T	1.455	0.95
71_A	75_T	1.448	0.95
19_L	28_I	1.445	0.95
116_V	119_R	1.434	0.95
9_L	297_W	1.433	0.95
293_Y	303_S	1.424	0.94
56_F	59_G	1.412	0.94
379_L	382_V	1.404	0.94
167_Y	384_G	1.404	0.94
282_I	287_I	1.403	0.94
174_M	359_I	1.394	0.94
71_A	262_A	1.391	0.94
65_E	69_G	1.383	0.93
252_I	256_M	1.368	0.93
28_I	211_L	1.360	0.93
148_S	252_I	1.358	0.93
5_L	9_L	1.350	0.93
235_F	239_L	1.347	0.93
249_V	253_V	1.338	0.92
318_V	353_F	1.337	0.92
396_A	399_V	1.331	0.92
247_F	255_A	1.329	0.92
250_A	254_A	1.329	0.92
158_L	366_L	1.325	0.92
147_Q	354_S	1.324	0.92
266_A	270_L	1.319	0.92
150_N	172_T	1.298	0.91
297_W	303_S	1.292	0.91
75_T	92_L	1.284	0.91
103_A	239_L	1.273	0.90
29_R	32_Y	1.262	0.90
304_S	308_Q	1.256	0.90
73_E	265_A	1.254	0.90
79_F	91_F	1.252	0.90
120_A	124_L	1.249	0.89
290_Y	307_L	1.248	0.89
90_F	354_S	1.235	0.89
238_M	242_Y	1.227	0.89
190_E	332_A	1.218	0.88
141_S	145_L	1.209	0.88
66_K	69_G	1.209	0.88
338_R	342_I	1.192	0.87
162_S	217_V	1.190	0.87
148_S	362_A	1.189	0.87
296_A	313_M	1.188	0.87
66_K	70_F	1.188	0.87
237_E	371_G	1.183	0.87
138_N	150_N	1.183	0.87
97_P	180_S	1.176	0.86
50_S	53_G	1.165	0.86
16_I	20_L	1.163	0.86
237_E	241_E	1.158	0.85
162_S	165_R	1.155	0.85
284_F	318_V	1.147	0.85
293_Y	307_L	1.134	0.84
264_I	319_S	1.133	0.84
312_I	331_I	1.128	0.84
305_E	335_L	1.126	0.84
168_T	172_T	1.125	0.84
270_L	273_T	1.125	0.84
180_S	249_V	1.122	0.84
267_L	284_F	1.116	0.83
389_S	392_S	1.107	0.83
184_A	322_F	1.100	0.82
103_A	243_I	1.098	0.82
151_F	173_A	1.097	0.82
45_W	49_N	1.094	0.82
319_S	323_V	1.090	0.82
382_V	386_T	1.081	0.81
328_L	343_I	1.079	0.81
259_G	357_G	1.079	0.81
301_V	309_V	1.064	0.80
303_S	310_G	1.064	0.80
121_I	143_L	1.058	0.80
43_L	204_S	1.054	0.80
20_L	25_R	1.052	0.79
41_V	395_I	1.045	0.79
325_M	348_V	1.040	0.79
162_S	216_R	1.039	0.79
285_Q	315_T	1.038	0.79
201_N	345_V	1.035	0.78
39_I	128_V	1.030	0.78
46_F	52_V	1.026	0.78
15_A	33_V	1.024	0.78
186_M	191_P	1.023	0.77
356_I	359_I	1.021	0.77
7_F	338_R	1.018	0.77
62_E	65_E	1.017	0.77
31_R	35_Q	1.014	0.77
113_V	337_P	1.012	0.77
332_A	340_E	1.006	0.76
283_S	286_G	1.005	0.76
320_N	354_S	1.000	0.76
17_L	295_I	0.999	0.76
353_F	382_V	0.997	0.76
188_M	326_M	0.995	0.75
63_M	66_K	0.993	0.75
81_S	85_Q	0.991	0.75
99_V	246_G	0.990	0.75
118_I	157_I	0.988	0.75
138_N	172_T	0.986	0.75
56_F	60_F	0.984	0.75
147_Q	358_I	0.983	0.75
86_G	89_F	0.981	0.74
275_T	283_S	0.977	0.74
388_V	392_S	0.976	0.74
14_V	208_V	0.974	0.74
382_V	385_S	0.974	0.74
363_V	374_V	0.974	0.74
68_L	183_G	0.971	0.74
111_I	114_L	0.963	0.73
125_L	129_N	0.963	0.73
22_S	211_L	0.958	0.73
60_F	63_M	0.955	0.72
271_F	282_I	0.953	0.72
168_T	209_L	0.945	0.72
252_I	362_A	0.945	0.72
142_S	176_T	0.942	0.71
282_I	286_G	0.936	0.71
311_S	315_T	0.935	0.71
147_Q	317_L	0.933	0.71
188_M	356_I	0.928	0.70
75_T	262_A	0.924	0.70
36_L	129_N	0.915	0.69
131_M	206_F	0.913	0.69
182_V	194_V	0.911	0.69
316_K	322_F	0.910	0.69
44_A	310_G	0.907	0.68
172_T	202_M	0.906	0.68
174_M	385_S	0.904	0.68
153_A	253_V	0.904	0.68
44_A	339_A	0.903	0.68
29_R	34_I	0.898	0.68
9_L	155_K	0.897	0.68
41_V	399_V	0.895	0.67
371_G	385_S	0.894	0.67
19_L	211_L	0.893	0.67
14_V	391_L	0.891	0.67
36_L	49_N	0.890	0.67
139_A	206_F	0.884	0.66
15_A	211_L	0.882	0.66
17_L	366_L	0.881	0.66
163_R	377_F	0.878	0.66
256_M	353_F	0.876	0.66
208_V	384_G	0.875	0.66
158_L	169_M	0.874	0.66
356_I	382_V	0.872	0.65
335_L	340_E	0.869	0.65
274_V	277_W	0.866	0.65
356_I	378_G	0.864	0.65
17_L	383_Y	0.862	0.65
181_I	354_S	0.860	0.64
285_Q	330_K	0.859	0.64
163_R	213_N	0.857	0.64
109_Q	156_D	0.857	0.64
145_L	153_A	0.854	0.64
356_I	374_V	0.852	0.64
43_L	105_I	0.848	0.63
77_F	90_F	0.847	0.63
69_G	72_N	0.844	0.63
71_A	97_P	0.844	0.63
207_I	389_S	0.841	0.63
13_V	16_I	0.839	0.62
94_V	250_A	0.839	0.62
198_L	201_N	0.837	0.62
35_Q	129_N	0.836	0.62
257_L	261_I	0.835	0.62
11_L	392_S	0.830	0.62
140_V	184_A	0.830	0.62
337_P	341_G	0.828	0.61
245_A	248_K	0.828	0.61
92_L	96_C	0.825	0.61
76_N	81_S	0.823	0.61
270_L	276_G	0.818	0.60
38_V	298_V	0.817	0.60
118_I	177_V	0.815	0.60
201_N	389_S	0.815	0.60
122_G	136_S	0.813	0.60
233_Q	376_R	0.812	0.60
308_Q	331_I	0.811	0.60
42_L	45_W	0.806	0.59
50_S	54_L	0.806	0.59
142_S	182_V	0.805	0.59
114_L	156_D	0.803	0.59
107_I	263_L	0.802	0.59
339_A	343_I	0.801	0.59
6_H	9_L	0.801	0.59
240_G	244_L	0.797	0.58
105_I	145_L	0.793	0.58
81_S	84_D	0.789	0.58
280_Y	290_Y	0.786	0.57
129_N	169_M	0.780	0.57
234_S	282_I	0.777	0.56
60_F	195_V	0.776	0.56
161_I	169_M	0.771	0.56
148_S	181_I	0.771	0.56
204_S	392_S	0.769	0.56
289_G	311_S	0.769	0.56
39_I	244_L	0.768	0.56
176_T	190_E	0.767	0.55
250_A	310_G	0.765	0.55
28_I	60_F	0.764	0.55
264_I	311_S	0.760	0.55
171_A	291_I	0.758	0.55
29_R	130_G	0.757	0.55
166_M	370_Q	0.756	0.54
304_S	336_S	0.756	0.54
157_I	385_S	0.756	0.54
122_G	125_L	0.754	0.54
352_N	355_S	0.752	0.54
134_L	161_I	0.751	0.54
160_K	285_Q	0.751	0.54
147_Q	250_A	0.750	0.54
55_G	58_K	0.749	0.54
177_V	181_I	0.748	0.54
194_V	210_S	0.748	0.54
63_M	107_I	0.747	0.54
40_E	204_S	0.747	0.54
134_L	150_N	0.746	0.53
345_V	396_A	0.745	0.53
299_M	342_I	0.742	0.53
59_G	63_M	0.741	0.53
35_Q	38_V	0.739	0.53
308_Q	335_L	0.736	0.52
54_L	58_K	0.731	0.52
164_N	210_S	0.731	0.52
345_V	389_S	0.731	0.52
44_A	331_I	0.730	0.52
14_V	299_M	0.730	0.52
182_V	186_M	0.729	0.52
105_I	114_L	0.727	0.52
342_I	380_K	0.727	0.52
195_V	199_V	0.727	0.52
164_N	202_M	0.726	0.51
105_I	176_T	0.726	0.51
317_L	351_A	0.724	0.51
138_N	169_M	0.722	0.51
182_V	198_L	0.721	0.51
106_G	232_G	0.720	0.51
7_F	195_V	0.719	0.51
15_A	398_L	0.718	0.51
211_L	298_V	0.717	0.51
89_F	258_I	0.714	0.50
358_I	361_G	0.711	0.50
135_E	168_T	0.710	0.50
91_F	254_A	0.710	0.50
11_L	204_S	0.707	0.50
142_S	172_T	0.706	0.49
79_F	96_C	0.705	0.49
215_Y	219_A	0.704	0.49
101_I	260_F	0.703	0.49
295_I	390_V	0.701	0.49
208_V	357_G	0.700	0.49
337_P	340_E	0.692	0.48
289_G	310_G	0.691	0.48
46_F	286_G	0.691	0.48
265_A	269_A	0.690	0.48
113_V	291_I	0.688	0.48
104_L	255_A	0.688	0.48
272_A	303_S	0.687	0.48
213_N	304_S	0.685	0.47
263_L	332_A	0.684	0.47
19_L	23_S	0.684	0.47
114_L	118_I	0.683	0.47
171_A	349_S	0.682	0.47
386_T	389_S	0.681	0.47
70_F	266_A	0.679	0.47
114_L	189_L	0.679	0.47
357_G	389_S	0.678	0.47
16_I	19_L	0.677	0.47
61_S	261_I	0.676	0.47
139_A	320_N	0.676	0.47
178_S	181_I	0.675	0.46
256_M	358_I	0.675	0.46
112_R	116_V	0.675	0.46
134_L	137_F	0.673	0.46
390_V	393_A	0.670	0.46
94_V	184_A	0.669	0.46
372_N	376_R	0.668	0.46
172_T	338_R	0.668	0.46
105_I	313_M	0.667	0.46
30_I	145_L	0.667	0.46
132_G	219_A	0.667	0.46
287_I	291_I	0.664	0.45
59_G	62_E	0.663	0.45
134_L	222_E	0.661	0.45
258_I	273_T	0.660	0.45
73_E	268_N	0.658	0.45
83_N	92_L	0.657	0.45
273_T	277_W	0.656	0.45
78_V	257_L	0.656	0.45
141_S	201_N	0.649	0.44
26_K	127_K	0.649	0.44
113_V	116_V	0.649	0.44
72_N	76_N	0.646	0.44
31_R	130_G	0.646	0.44
193_Y	392_S	0.645	0.43
307_L	310_G	0.645	0.43
268_N	283_S	0.644	0.43
342_I	391_L	0.644	0.43
170_A	179_M	0.644	0.43
357_G	378_G	0.641	0.43
312_I	324_A	0.641	0.43
81_S	89_F	0.640	0.43
16_I	211_L	0.638	0.43
35_Q	155_K	0.636	0.43
320_N	324_A	0.636	0.43
140_V	143_L	0.635	0.42
295_I	298_V	0.633	0.42
123_F	128_V	0.631	0.42
37_L	395_I	0.631	0.42
232_G	241_E	0.631	0.42
27_K	345_V	0.630	0.42
177_V	292_F	0.630	0.42
15_A	28_I	0.629	0.42
147_Q	240_G	0.629	0.42
163_R	370_Q	0.628	0.42
75_T	196_A	0.625	0.42
301_V	343_I	0.624	0.41
362_A	374_V	0.623	0.41
94_V	322_F	0.622	0.41
134_L	220_S	0.620	0.41
53_G	135_E	0.620	0.41
102_S	176_T	0.620	0.41
104_L	263_L	0.620	0.41
138_N	205_T	0.618	0.41
147_Q	310_G	0.617	0.41
8_V	398_L	0.617	0.41
193_Y	204_S	0.617	0.41
254_A	257_L	0.615	0.41
8_V	372_N	0.614	0.40
247_F	254_A	0.614	0.40
250_A	253_V	0.611	0.40
125_L	382_V	0.610	0.40
55_G	99_V	0.609	0.40
44_A	303_S	0.608	0.40
180_S	356_I	0.607	0.40
320_N	323_V	0.606	0.40
207_I	378_G	0.606	0.40
287_I	310_G	0.605	0.40
109_Q	115_P	0.605	0.40
244_L	251_I	0.604	0.40
394_S	397_A	0.603	0.39
43_L	46_F	0.602	0.39
158_L	270_L	0.602	0.39
28_I	224_I	0.601	0.39
20_L	251_I	0.601	0.39
321_E	324_A	0.601	0.39
15_A	366_L	0.600	0.39
57_V	122_G	0.600	0.39
301_V	339_A	0.599	0.39
158_L	330_K	0.599	0.39
142_S	202_M	0.598	0.39
29_R	129_N	0.597	0.39
15_A	37_L	0.596	0.39
122_G	161_I	0.595	0.39
320_N	352_N	0.594	0.39
112_R	256_M	0.593	0.38
131_M	164_N	0.593	0.38
342_I	386_T	0.591	0.38
174_M	381_L	0.589	0.38
367_N	373_V	0.589	0.38
55_G	59_G	0.585	0.38
178_S	315_T	0.585	0.38
41_V	45_W	0.585	0.38
54_L	192_K	0.585	0.38
36_L	140_V	0.582	0.37
7_F	398_L	0.582	0.37
46_F	342_I	0.581	0.37
42_L	130_G	0.581	0.37
97_P	202_M	0.580	0.37
66_K	269_A	0.580	0.37
46_F	56_F	0.579	0.37
219_A	222_E	0.579	0.37
275_T	281_S	0.578	0.37
359_I	363_V	0.578	0.37
132_G	165_R	0.578	0.37
136_S	146_G	0.578	0.37
316_K	352_N	0.575	0.37
95_L	250_A	0.574	0.37
360_A	395_I	0.574	0.37
170_A	359_I	0.573	0.37
351_A	355_S	0.573	0.37
213_N	377_F	0.573	0.37
161_I	396_A	0.570	0.36
142_S	150_N	0.569	0.36
84_D	87_L	0.568	0.36
155_K	301_V	0.568	0.36
44_A	341_G	0.568	0.36
270_L	308_Q	0.568	0.36
100_F	135_E	0.567	0.36
52_V	55_G	0.566	0.36
238_M	314_A	0.565	0.36
113_V	279_G	0.564	0.36
15_A	207_I	0.563	0.36
339_A	344_S	0.563	0.36
9_L	13_V	0.562	0.36
85_Q	330_K	0.562	0.36
395_I	398_L	0.560	0.35
189_L	347_L	0.560	0.35
208_V	360_A	0.560	0.35
181_I	322_F	0.559	0.35
65_E	353_F	0.558	0.35
15_A	30_I	0.556	0.35
337_P	399_V	0.556	0.35
63_M	67_L	0.555	0.35
253_V	262_A	0.553	0.35
219_A	258_I	0.553	0.35
152_I	249_V	0.552	0.35
315_T	320_N	0.552	0.35
189_L	348_V	0.550	0.35
246_G	250_A	0.549	0.34
142_S	173_A	0.548	0.34
150_N	362_A	0.548	0.34
82_M	92_L	0.547	0.34
288_L	318_V	0.547	0.34
9_L	298_V	0.547	0.34
5_L	123_F	0.545	0.34
101_I	152_I	0.545	0.34
386_T	390_V	0.543	0.34
302_P	308_Q	0.543	0.34
110_H	224_I	0.543	0.34
102_S	152_I	0.543	0.34
140_V	172_T	0.543	0.34
99_V	125_L	0.542	0.34
107_I	111_I	0.542	0.34
83_N	88_A	0.542	0.34
154_Y	169_M	0.541	0.34
44_A	389_S	0.539	0.34
305_E	339_A	0.539	0.34
19_L	396_A	0.538	0.33
42_L	46_F	0.538	0.33
116_V	393_A	0.537	0.33
165_R	284_F	0.536	0.33
137_F	153_A	0.535	0.33
85_Q	212_I	0.535	0.33
143_L	202_M	0.534	0.33
142_S	151_F	0.533	0.33
200_L	393_A	0.533	0.33
98_I	250_A	0.532	0.33
239_L	396_A	0.531	0.33
355_S	358_I	0.530	0.33
78_V	254_A	0.529	0.33
139_A	201_N	0.529	0.33
32_Y	199_V	0.529	0.33
374_V	382_V	0.529	0.33
354_S	358_I	0.527	0.32
38_V	42_L	0.527	0.32
11_L	282_I	0.527	0.32
129_N	172_T	0.525	0.32
114_L	201_N	0.524	0.32
325_M	347_L	0.524	0.32
167_Y	186_M	0.522	0.32
267_L	361_G	0.522	0.32
158_L	271_F	0.522	0.32
326_M	329_Q	0.521	0.32
5_L	14_V	0.520	0.32
153_A	205_T	0.519	0.32
19_L	281_S	0.519	0.32
176_T	338_R	0.519	0.32
204_S	399_V	0.518	0.32
156_D	368_E	0.518	0.32
100_F	310_G	0.518	0.32
35_Q	128_V	0.518	0.32
71_A	208_V	0.517	0.32
98_I	322_F	0.517	0.32
36_L	40_E	0.517	0.32
145_L	150_N	0.517	0.32
44_A	385_S	0.516	0.32
8_V	226_M	0.516	0.32
97_P	183_G	0.516	0.32
65_E	190_E	0.515	0.31
113_V	372_N	0.515	0.31
161_I	198_L	0.515	0.31
30_I	34_I	0.514	0.31
354_S	376_R	0.514	0.31
6_H	398_L	0.512	0.31
218_D	222_E	0.512	0.31
238_M	243_I	0.511	0.31
87_L	337_P	0.511	0.31
137_F	142_S	0.510	0.31
236_F	353_F	0.509	0.31
95_L	102_S	0.509	0.31
183_G	187_T	0.509	0.31
295_I	376_R	0.509	0.31
10_A	396_A	0.508	0.31
29_R	282_I	0.508	0.31
89_F	93_K	0.508	0.31
78_V	101_I	0.507	0.31
208_V	387_L	0.507	0.31
193_Y	341_G	0.506	0.31
70_F	265_A	0.506	0.31
252_I	361_G	0.504	0.31
107_I	255_A	0.504	0.31
24_D	311_S	0.503	0.30
131_M	210_S	0.502	0.30
33_V	158_L	0.502	0.30
5_L	216_R	0.501	0.30
145_L	362_A	0.501	0.30
256_M	386_T	0.501	0.30
129_N	215_Y	0.501	0.30
169_M	337_P	0.500	0.30

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4pd6A	3	0.965	100	0.119	Contact Map
2cfqA	1	0.8775	31.7	0.978	Contact Map
4ikvA	1	0.425	25	0.979	Contact Map
4oh3A	2	0.4125	21.6	0.979	Contact Map
2mofA	1	0.0825	14.9	0.981	Contact Map
4zw9A	1	0.39	13.6	0.981	Contact Map
4j05A	3	0.3725	11.6	0.982	Contact Map
4fc4A	3	0.4	6.3	0.984	Contact Map
4w6vA	1	0.4125	6.1	0.984	Contact Map
4r1iA	2	0.9325	4.7	0.985	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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