NUON - ECOLI - GREMLIN Contacts

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NUON - NADH-quinone oxidoreductase subunit N

UniProt:	P0AFF0	Sequences: MTITPQNLIALLPLLIVGLTVVVVMLSIAWRRNHFLNATLSVIGLNAALVSLWFVGQAGAMDVTPLMRVDGFAMLYTGLVLLASLATCTFAYPWLEGYNDNKDEFYLLVLIAALGGILLANANHLASLFLGIELISLPLFGLVGYAFRQKRSLEASIKYTILSAAASSFLLFGMALVYAQSGDLSFVALGKNLGDGMLNEPLLLAGFGLMIVGLGFKLSLVPFHLWTPDVYQGAPAPVSTFLATASKIAIFGVVMRLFLYAPVGDSEAIRVVLAIIAFASIIFGNLMALSQTNIKRLLGYSSISHLGYLLVALIALQTGEMSMEAVGVYLAGYLFSSLGAFGVVSLMSSPYRGPDADSLFSYRGLFWHRPILAAVMTVMMLSLAGIPMTLGFIGKFYVLAVGVQAHLWWLVGAVVVGSAIGLYYYLRVAVSLYLHAPEQPGRDAPSNWQYSAGGIVVLISALLVLVLGVWPQPLISIVRLAMPLM	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG12093
Length:	485 (444)
Sequences:	20188 (12501)
Seq/√Len:	593.3

ECOLI - NUON HYFB NUOL HYCC HYFF NUOM HYFD
BACSU - MRPA MRPD NDHF
HALSA - Q9HRL3 Q9HRL2 Q9HRT0 Q9HRS9 Q9HRL1 Q9HRS8
SULSO - Q980G8 Q97ZA6 Q97ZA9 Q980G9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
339_G	379_M	4.733	1.00
118_L	131_G	4.525	1.00
185_S	188_A	4.049	1.00
77_T	121_N	3.831	1.00
144_G	156_S	3.620	1.00
332_G	390_L	3.338	1.00
293_N	357_D	3.203	1.00
84_S	113_A	3.195	1.00
158_K	229_D	3.187	1.00
281_I	417_G	3.076	1.00
183_D	188_A	3.007	1.00
329_Y	394_G	2.953	1.00
292_T	360_F	2.844	1.00
277_A	314_I	2.729	1.00
115_G	134_L	2.720	1.00
298_L	344_V	2.703	1.00
356_A	361_S	2.675	1.00
377_T	429_A	2.670	1.00
173_G	209_L	2.639	1.00
13_P	16_I	2.587	1.00
77_T	117_I	2.573	1.00
80_V	120_A	2.546	1.00
358_S	361_S	2.538	1.00
220_L	310_L	2.505	1.00
380_M	425_Y	2.290	1.00
68_R	123_N	2.286	1.00
91_A	105_F	2.279	1.00
297_L	359_L	2.277	1.00
70_D	255_M	2.260	1.00
289_L	423_Y	2.236	1.00
42_V	85_L	2.188	1.00
311_V	414_V	2.156	1.00
81_L	117_I	2.111	1.00
70_D	73_A	2.084	1.00
231_Y	239_S	2.046	1.00
188_A	191_K	1.997	1.00
312_A	398_V	1.983	1.00
271_V	275_I	1.969	1.00
328_V	394_G	1.958	1.00
231_Y	246_S	1.932	1.00
215_G	220_L	1.914	1.00
16_I	21_V	1.909	1.00
42_V	46_N	1.883	1.00
292_T	358_S	1.871	1.00
301_S	424_Y	1.860	1.00
24_V	27_S	1.860	1.00
282_I	417_G	1.858	1.00
427_R	431_S	1.847	1.00
369_R	372_L	1.835	1.00
470_W	473_P	1.822	1.00
294_I	428_V	1.816	1.00
285_N	304_S	1.812	1.00
325_A	401_V	1.767	1.00
125_L	189_L	1.758	1.00
274_A	314_I	1.735	1.00
408_W	412_G	1.729	1.00
17_V	27_S	1.721	1.00
291_Q	296_R	1.719	1.00
451_S	455_I	1.715	1.00
14_L	17_V	1.707	1.00
45_L	82_L	1.706	1.00
79_L	334_L	1.702	1.00
366_F	373_A	1.701	1.00
219_S	227_T	1.678	1.00
176_L	206_G	1.673	1.00
399_L	414_V	1.666	1.00
211_I	215_G	1.665	1.00
188_A	192_N	1.657	1.00
17_V	21_V	1.656	1.00
123_N	187_V	1.654	1.00
268_A	271_V	1.650	1.00
17_V	114_L	1.645	1.00
335_F	463_L	1.636	1.00
41_S	44_G	1.628	1.00
16_I	27_S	1.618	1.00
278_F	413_A	1.607	1.00
462_L	466_V	1.603	1.00
122_A	127_S	1.593	1.00
221_V	279_A	1.589	1.00
44_G	48_A	1.578	1.00
246_S	302_S	1.561	1.00
40_L	44_G	1.495	1.00
75_L	331_A	1.473	1.00
313_L	326_V	1.470	1.00
68_R	71_G	1.467	1.00
108_L	141_G	1.465	1.00
180_Q	206_G	1.462	1.00
400_A	404_Q	1.461	1.00
402_G	411_V	1.452	1.00
19_L	40_L	1.451	1.00
273_L	314_I	1.448	1.00
378_V	461_A	1.447	1.00
16_I	19_L	1.435	1.00
149_Q	152_S	1.431	1.00
376_M	380_M	1.419	1.00
88_C	106_Y	1.412	1.00
309_L	326_V	1.406	1.00
48_A	81_L	1.403	1.00
124_H	184_L	1.400	1.00
285_N	417_G	1.399	1.00
124_H	185_S	1.398	1.00
220_L	276_I	1.397	1.00
274_A	410_L	1.389	1.00
88_C	109_V	1.386	1.00
201_P	205_A	1.381	1.00
173_G	213_G	1.381	1.00
451_S	454_G	1.379	1.00
458_L	462_L	1.377	1.00
270_R	274_A	1.377	1.00
142_L	238_V	1.376	1.00
373_A	434_L	1.367	1.00
178_Y	184_L	1.364	1.00
70_D	257_L	1.361	1.00
311_V	402_G	1.361	1.00
66_L	123_N	1.360	1.00
28_I	31_R	1.354	1.00
69_V	121_N	1.351	1.00
459_I	463_L	1.350	1.00
336_S	382_S	1.350	1.00
21_V	27_S	1.341	1.00
173_G	210_M	1.341	1.00
211_I	273_L	1.333	1.00
155_A	233_G	1.332	1.00
46_N	50_V	1.332	1.00
41_S	45_L	1.326	1.00
128_L	186_F	1.321	1.00
34_H	37_N	1.314	1.00
373_A	429_A	1.308	1.00
312_A	322_S	1.308	1.00
173_G	206_G	1.287	1.00
251_F	255_M	1.286	1.00
175_A	179_A	1.279	1.00
75_L	327_G	1.277	1.00
322_S	401_V	1.275	1.00
20_T	24_V	1.265	1.00
376_M	428_V	1.261	1.00
340_A	379_M	1.254	1.00
170_L	213_G	1.251	1.00
39_T	43_I	1.246	1.00
312_A	326_V	1.241	1.00
73_A	251_F	1.239	1.00
34_H	38_A	1.238	1.00
151_R	232_Q	1.231	1.00
343_V	376_M	1.228	1.00
101_N	104_E	1.227	1.00
35_F	39_T	1.224	1.00
450_Y	453_G	1.221	1.00
83_A	338_L	1.218	1.00
229_D	296_R	1.217	1.00
162_L	225_L	1.206	1.00
37_N	41_S	1.204	1.00
316_L	322_S	1.199	1.00
380_M	429_A	1.196	1.00
126_A	184_L	1.191	1.00
359_L	432_L	1.186	1.00
283_F	287_M	1.184	1.00
90_F	342_G	1.183	1.00
379_M	461_A	1.180	1.00
83_A	334_L	1.179	1.00
176_L	202_L	1.178	1.00
56_G	59_G	1.174	1.00
456_V	459_I	1.167	1.00
180_Q	202_L	1.156	1.00
38_A	41_S	1.151	1.00
383_L	425_Y	1.148	1.00
332_G	394_G	1.145	1.00
129_F	171_L	1.139	1.00
304_S	421_G	1.136	1.00
125_L	174_M	1.133	1.00
128_L	252_G	1.130	1.00
93_P	96_E	1.130	1.00
187_V	191_K	1.130	1.00
58_A	62_D	1.126	1.00
57_Q	62_D	1.125	1.00
409_W	412_G	1.120	1.00
325_A	397_Y	1.119	1.00
21_V	24_V	1.115	1.00
112_A	116_G	1.114	1.00
215_G	276_I	1.113	1.00
397_Y	400_A	1.113	1.00
375_V	461_A	1.112	1.00
216_F	223_F	1.112	1.00
45_L	49_L	1.105	1.00
170_L	174_M	1.104	1.00
35_F	38_A	1.103	1.00
284_G	307_G	1.099	1.00
154_E	158_K	1.098	1.00
81_L	85_L	1.096	1.00
86_A	459_I	1.092	1.00
348_S	357_D	1.091	1.00
403_V	411_V	1.090	1.00
275_I	279_A	1.090	1.00
93_P	452_A	1.089	1.00
174_M	210_M	1.088	1.00
48_A	52_L	1.088	1.00
371_I	374_A	1.076	1.00
277_A	307_G	1.073	1.00
37_N	40_L	1.073	1.00
76_Y	330_L	1.067	1.00
343_V	457_V	1.066	1.00
463_L	467_L	1.063	1.00
346_L	372_L	1.054	1.00
377_T	433_Y	1.051	1.00
181_S	189_L	1.050	1.00
371_I	458_L	1.049	1.00
111_I	138_P	1.046	1.00
236_A	295_K	1.044	1.00
146_A	149_Q	1.039	1.00
53_W	56_G	1.034	1.00
109_V	241_F	1.029	1.00
249_A	252_G	1.028	1.00
59_G	62_D	1.027	1.00
169_F	209_L	1.025	1.00
452_A	456_V	1.024	1.00
412_G	416_V	1.022	1.00
421_G	424_Y	1.015	1.00
381_L	386_I	1.014	1.00
33_N	36_L	1.013	1.00
166_A	216_F	1.013	1.00
206_G	210_M	1.011	1.00
204_L	269_I	1.011	1.00
36_L	40_L	1.011	1.00
375_V	457_V	1.008	1.00
201_P	204_L	1.005	1.00
69_V	74_M	1.004	1.00
19_L	23_V	1.002	1.00
116_G	245_A	0.999	1.00
363_R	438_E	0.997	1.00
376_M	433_Y	0.997	1.00
149_Q	232_Q	0.996	1.00
184_L	188_A	0.996	1.00
371_I	375_V	0.993	1.00
267_E	270_R	0.989	1.00
350_P	369_R	0.988	1.00
31_R	34_H	0.987	1.00
390_L	467_L	0.985	1.00
123_N	185_S	0.985	1.00
37_N	44_G	0.978	1.00
178_Y	181_S	0.976	1.00
85_L	89_T	0.976	1.00
54_F	57_Q	0.973	1.00
150_K	154_E	0.971	1.00
80_V	113_A	0.969	1.00
333_Y	337_S	0.968	1.00
346_L	457_V	0.963	1.00
253_V	257_L	0.960	1.00
186_F	190_G	0.958	1.00
110_L	114_L	0.957	1.00
37_N	106_Y	0.956	1.00
373_A	433_Y	0.954	1.00
82_L	86_A	0.953	1.00
12_L	17_V	0.951	1.00
243_A	337_S	0.950	1.00
90_F	345_S	0.947	1.00
294_I	344_V	0.947	1.00
461_A	465_L	0.947	1.00
177_V	206_G	0.947	1.00
228_P	300_Y	0.942	1.00
221_V	283_F	0.939	1.00
309_L	330_L	0.938	1.00
265_D	268_A	0.938	1.00
169_F	212_V	0.935	1.00
312_A	325_A	0.935	1.00
240_T	342_G	0.933	1.00
279_A	283_F	0.932	1.00
231_Y	243_A	0.932	1.00
277_A	311_V	0.929	1.00
440_P	443_D	0.927	1.00
44_G	47_A	0.926	1.00
197_M	200_E	0.925	1.00
29_A	32_R	0.922	1.00
37_N	47_A	0.915	1.00
57_Q	60_A	0.914	1.00
84_S	109_V	0.913	1.00
16_I	20_T	0.912	1.00
53_W	57_Q	0.911	1.00
347_M	365_L	0.911	1.00
328_V	332_G	0.908	1.00
248_I	251_F	0.908	1.00
73_A	77_T	0.908	1.00
28_I	32_R	0.908	1.00
363_R	431_S	0.906	1.00
305_H	421_G	0.906	1.00
254_V	313_L	0.906	1.00
43_I	47_A	0.903	1.00
72_F	327_G	0.903	1.00
33_N	37_N	0.901	1.00
49_L	78_G	0.900	1.00
41_S	88_C	0.900	1.00
339_G	460_S	0.898	1.00
204_L	268_A	0.896	1.00
231_Y	302_S	0.896	1.00
70_D	256_R	0.896	1.00
274_A	277_A	0.895	1.00
244_T	247_K	0.894	1.00
271_V	274_A	0.893	1.00
176_L	180_Q	0.888	1.00
375_V	458_L	0.888	1.00
227_T	231_Y	0.887	1.00
281_I	311_V	0.886	1.00
417_G	420_I	0.884	1.00
266_S	270_R	0.883	1.00
297_L	428_V	0.881	1.00
396_F	400_A	0.881	1.00
115_G	138_P	0.880	1.00
466_V	470_W	0.878	1.00
285_N	424_Y	0.874	1.00
153_L	156_S	0.873	1.00
19_L	27_S	0.871	1.00
140_F	156_S	0.871	1.00
294_I	362_Y	0.871	1.00
285_N	420_I	0.869	1.00
45_L	81_L	0.868	1.00
293_N	358_S	0.867	1.00
425_Y	428_V	0.865	1.00
93_P	450_Y	0.863	1.00
199_N	203_L	0.861	1.00
183_D	186_F	0.859	1.00
129_F	133_E	0.856	1.00
200_E	204_L	0.855	1.00
17_V	20_T	0.854	1.00
211_I	253_V	0.853	1.00
67_M	121_N	0.852	1.00
284_G	287_M	0.851	1.00
390_L	464_V	0.850	1.00
48_A	51_S	0.849	1.00
58_A	61_M	0.849	1.00
320_E	324_E	0.849	1.00
56_G	62_D	0.848	1.00
117_I	121_N	0.848	1.00
66_L	185_S	0.847	1.00
243_A	302_S	0.846	1.00
286_L	420_I	0.842	1.00
41_S	47_A	0.835	1.00
277_A	310_L	0.835	1.00
129_F	174_M	0.834	1.00
204_L	208_G	0.834	1.00
302_S	333_Y	0.832	1.00
308_Y	398_V	0.829	1.00
429_A	434_L	0.829	1.00
441_G	444_A	0.825	1.00
288_A	424_Y	0.824	1.00
207_F	269_I	0.824	1.00
208_G	212_V	0.819	1.00
278_F	410_L	0.818	1.00
143_V	230_V	0.817	1.00
305_H	329_Y	0.817	1.00
374_A	433_Y	0.816	1.00
16_I	24_V	0.816	1.00
87_T	342_G	0.816	1.00
373_A	377_T	0.813	1.00
112_A	139_L	0.812	1.00
125_L	258_F	0.811	1.00
35_F	40_L	0.809	1.00
115_G	131_G	0.806	1.00
205_A	209_L	0.806	1.00
305_H	424_Y	0.806	1.00
281_I	307_G	0.805	1.00
455_I	459_I	0.804	1.00
21_V	111_I	0.802	1.00
63_V	126_A	0.800	1.00
399_L	411_V	0.800	1.00
454_G	458_L	0.798	1.00
76_Y	252_G	0.796	1.00
374_A	378_V	0.795	1.00
18_G	114_L	0.794	1.00
38_A	42_V	0.794	1.00
367_W	370_P	0.792	1.00
151_R	233_G	0.791	1.00
346_L	449_Q	0.791	1.00
132_I	170_L	0.788	1.00
183_D	189_L	0.786	1.00
336_S	391_G	0.786	1.00
336_S	464_V	0.783	1.00
380_M	428_V	0.782	1.00
78_G	82_L	0.781	1.00
177_V	189_L	0.779	1.00
284_G	304_S	0.778	1.00
466_V	473_P	0.776	1.00
34_H	41_S	0.772	1.00
199_N	202_L	0.766	1.00
140_F	163_S	0.765	1.00
56_G	60_A	0.764	1.00
54_F	64_T	0.762	1.00
372_L	449_Q	0.762	1.00
382_S	389_T	0.762	1.00
86_A	456_V	0.762	1.00
278_F	311_V	0.759	1.00
455_I	458_L	0.758	1.00
200_E	203_L	0.757	1.00
356_A	362_Y	0.757	1.00
368_H	437_P	0.754	1.00
247_K	251_F	0.753	1.00
116_G	135_I	0.753	1.00
384_A	422_L	0.753	1.00
419_A	423_Y	0.752	1.00
274_A	278_F	0.748	1.00
80_V	116_G	0.746	1.00
24_V	28_I	0.746	1.00
298_L	340_A	0.743	1.00
143_V	234_A	0.740	1.00
94_W	237_P	0.738	1.00
301_S	333_Y	0.737	1.00
37_N	43_I	0.737	1.00
41_S	48_A	0.737	1.00
359_L	431_S	0.734	1.00
33_N	44_G	0.731	1.00
92_Y	452_A	0.731	1.00
103_D	107_L	0.729	1.00
35_F	41_S	0.729	1.00
12_L	16_I	0.729	1.00
18_G	22_V	0.727	1.00
166_A	213_G	0.726	1.00
151_R	154_E	0.726	1.00
374_A	377_T	0.721	1.00
79_L	331_A	0.721	1.00
27_S	30_W	0.721	1.00
44_G	50_V	0.721	1.00
164_A	167_S	0.720	1.00
34_H	45_L	0.717	1.00
363_R	435_H	0.716	1.00
413_A	417_G	0.716	1.00
426_L	430_V	0.716	1.00
354_P	362_Y	0.713	1.00
350_P	453_G	0.712	1.00
282_I	286_L	0.710	1.00
274_A	311_V	0.709	1.00
239_S	242_L	0.707	1.00
177_V	210_M	0.707	1.00
385_G	395_K	0.706	1.00
371_I	454_G	0.705	1.00
388_M	469_V	0.704	1.00
218_L	250_I	0.702	1.00
105_F	237_P	0.702	1.00
285_N	301_S	0.700	1.00
124_H	127_S	0.700	1.00
14_L	114_L	0.700	1.00
47_A	51_S	0.696	1.00
322_S	326_V	0.695	1.00
203_L	206_G	0.694	1.00
272_V	275_I	0.694	1.00
438_E	441_G	0.694	1.00
81_L	113_A	0.689	1.00
205_A	208_G	0.689	1.00
449_Q	454_G	0.689	1.00
26_L	29_A	0.688	1.00
232_Q	293_N	0.688	1.00
422_L	426_L	0.688	1.00
255_M	310_L	0.687	1.00
255_M	263_V	0.687	1.00
232_Q	296_R	0.685	1.00
329_Y	336_S	0.683	1.00
143_V	242_L	0.679	1.00
291_Q	300_Y	0.678	1.00
87_T	240_T	0.678	1.00
72_F	76_Y	0.678	1.00
66_L	124_H	0.677	1.00
250_I	309_L	0.676	1.00
375_V	379_M	0.675	1.00
123_N	127_S	0.675	1.00
236_A	345_S	0.672	1.00
278_F	282_I	0.671	1.00
308_Y	417_G	0.670	1.00
89_T	456_V	0.670	1.00
246_S	306_L	0.667	1.00
277_A	281_I	0.666	1.00
42_V	45_L	0.666	1.00
171_L	175_A	0.666	1.00
69_V	73_A	0.665	1.00
157_I	161_I	0.663	1.00
21_V	25_M	0.662	1.00
366_F	433_Y	0.661	1.00
83_A	241_F	0.658	1.00
439_Q	442_R	0.658	1.00
68_R	187_V	0.657	1.00
461_A	464_V	0.656	1.00
439_Q	443_D	0.656	1.00
467_L	474_L	0.655	1.00
239_S	295_K	0.654	1.00
74_M	78_G	0.652	1.00
37_N	50_V	0.650	1.00
41_S	51_S	0.649	1.00
13_P	27_S	0.649	1.00
28_I	34_H	0.648	1.00
294_I	432_L	0.645	1.00
202_L	206_G	0.643	1.00
282_I	413_A	0.642	1.00
389_T	393_I	0.638	1.00
249_A	253_V	0.638	1.00
27_S	31_R	0.636	1.00
451_S	456_V	0.633	1.00
254_V	323_M	0.633	1.00
399_L	418_S	0.631	1.00
38_A	44_G	0.629	1.00
250_I	330_L	0.626	1.00
343_V	375_V	0.624	1.00
251_F	256_R	0.622	1.00
80_V	117_I	0.621	1.00
331_A	474_L	0.621	1.00
346_L	350_P	0.620	1.00
33_N	41_S	0.619	1.00
207_F	211_I	0.617	1.00
112_A	241_F	0.613	1.00
87_T	237_P	0.613	1.00
22_V	25_M	0.613	1.00
378_V	465_L	0.610	1.00
346_L	453_G	0.609	1.00
45_L	51_S	0.609	1.00
429_A	433_Y	0.607	1.00
128_L	170_L	0.606	1.00
197_M	201_P	0.606	1.00
287_M	300_Y	0.606	1.00
102_K	106_Y	0.605	1.00
26_L	30_W	0.605	1.00
53_W	58_A	0.603	1.00
385_G	389_T	0.601	1.00
49_L	52_L	0.601	1.00
105_F	145_Y	0.600	1.00
78_G	81_L	0.600	1.00
39_T	44_G	0.598	1.00
228_P	303_I	0.598	1.00
231_Y	299_G	0.597	1.00
305_H	337_S	0.597	1.00
84_S	241_F	0.595	1.00
33_N	38_A	0.595	1.00
285_N	421_G	0.595	1.00
401_V	405_A	0.595	1.00
382_S	391_G	0.595	1.00
24_V	31_R	0.595	1.00
54_F	59_G	0.594	1.00
440_P	444_A	0.592	1.00
251_F	257_L	0.591	1.00
139_L	245_A	0.591	1.00
359_L	428_V	0.591	1.00
214_L	252_G	0.589	1.00
76_Y	80_V	0.589	1.00
37_N	48_A	0.589	1.00
19_L	22_V	0.588	1.00
111_I	115_G	0.587	1.00
82_L	463_L	0.585	1.00
225_L	228_P	0.584	1.00
45_L	85_L	0.584	1.00
35_F	44_G	0.584	1.00
44_G	81_L	0.584	1.00
339_G	457_V	0.583	1.00
80_V	84_S	0.583	1.00
239_S	333_Y	0.582	1.00
234_A	239_S	0.582	1.00
395_K	418_S	0.579	1.00
15_L	19_L	0.578	1.00
268_A	272_V	0.577	1.00
343_V	379_M	0.577	1.00
377_T	434_L	0.576	1.00
342_G	456_V	0.576	1.00
379_M	464_V	0.575	1.00
287_M	291_Q	0.573	1.00
387_P	392_F	0.571	1.00
198_L	201_P	0.569	1.00
336_S	383_L	0.568	1.00
87_T	109_V	0.568	1.00
86_A	338_L	0.567	1.00
97_G	101_N	0.567	1.00
129_F	167_S	0.566	1.00
281_I	308_Y	0.566	1.00
301_S	337_S	0.566	1.00
20_T	23_V	0.565	1.00
91_A	237_P	0.564	1.00
40_L	47_A	0.564	1.00
125_L	177_V	0.563	1.00
48_A	78_G	0.563	1.00
34_H	44_G	0.563	1.00
291_Q	297_L	0.561	1.00
302_S	306_L	0.560	1.00
13_P	17_V	0.560	1.00
33_N	47_A	0.559	0.99
189_L	192_N	0.558	0.99
375_V	454_G	0.556	0.99
25_M	29_A	0.556	0.99
301_S	305_H	0.556	0.99
322_S	325_A	0.555	0.99
393_I	397_Y	0.555	0.99
55_V	59_G	0.554	0.99
113_A	117_I	0.554	0.99
119_L	248_I	0.554	0.99
36_L	39_T	0.550	0.99
23_V	27_S	0.549	0.99
154_E	229_D	0.548	0.99
335_F	390_L	0.548	0.99
202_L	205_A	0.547	0.99
176_L	205_A	0.546	0.99
349_S	450_Y	0.546	0.99
349_S	453_G	0.546	0.99
249_A	255_M	0.545	0.99
286_L	290_S	0.545	0.99
415_V	418_S	0.545	0.99
252_G	256_R	0.541	0.99
39_T	42_V	0.541	0.99
403_V	408_W	0.541	0.99
72_F	254_V	0.541	0.99
333_Y	341_F	0.539	0.99
12_L	19_L	0.538	0.99
187_V	190_G	0.537	0.99
227_T	230_V	0.537	0.99
25_M	28_I	0.536	0.99
287_M	290_S	0.536	0.99
105_F	238_V	0.533	0.99
381_L	426_L	0.533	0.99
243_A	341_F	0.531	0.99
12_L	15_L	0.530	0.99
172_F	176_L	0.530	0.99
321_M	404_Q	0.529	0.99
14_L	27_S	0.529	0.99
37_N	51_S	0.528	0.99
133_E	217_K	0.528	0.99
139_L	142_L	0.527	0.99
108_L	138_P	0.527	0.99
377_T	381_L	0.527	0.99
13_P	21_V	0.527	0.99
37_N	45_L	0.526	0.99
362_Y	432_L	0.526	0.99
235_P	295_K	0.525	0.99
305_H	308_Y	0.524	0.99
104_E	108_L	0.524	0.99
343_V	372_L	0.524	0.99
135_I	248_I	0.521	0.99
247_K	250_I	0.520	0.99
39_T	46_N	0.519	0.99
21_V	29_A	0.519	0.99
131_G	134_L	0.519	0.99
90_F	240_T	0.519	0.99
51_S	74_M	0.518	0.99
127_S	130_L	0.518	0.99
122_A	131_G	0.517	0.99
465_L	469_V	0.517	0.99
370_P	373_A	0.517	0.99
430_V	435_H	0.517	0.99
91_A	94_W	0.515	0.99
423_Y	427_R	0.515	0.99
33_N	48_A	0.515	0.99
365_L	369_R	0.515	0.99
108_L	111_I	0.515	0.99
329_Y	332_G	0.514	0.99
264_G	267_E	0.514	0.99
32_R	35_F	0.513	0.99
20_T	25_M	0.513	0.99
26_L	31_R	0.512	0.99
125_L	186_F	0.510	0.99
83_A	87_T	0.510	0.99
292_T	301_S	0.509	0.99
13_P	20_T	0.509	0.99
452_A	455_I	0.509	0.99
44_G	49_L	0.508	0.99
39_T	50_V	0.508	0.99
52_L	78_G	0.507	0.99
89_T	455_I	0.507	0.99
409_W	413_A	0.505	0.99
339_G	461_A	0.504	0.99
181_S	185_S	0.503	0.99
253_V	310_L	0.503	0.99
14_L	21_V	0.502	0.99
139_L	242_L	0.502	0.99
232_Q	243_A	0.502	0.99
262_P	265_D	0.502	0.99
236_A	239_S	0.501	0.99
209_L	213_G	0.501	0.99
380_M	384_A	0.500	0.99

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3rkoN	1	0.9711	100	0.143	Contact Map
3rkoM	1	0.9588	100	0.185	Contact Map
3rkoL	1	0.9567	100	0.204	Contact Map
4he8L	1	0.9526	100	0.217	Contact Map
4he8M	1	0.9175	100	0.221	Contact Map
4he8N	1	0.8722	100	0.271	Contact Map
4he8K	1	0.1918	30.8	0.963	Contact Map
3rkoK	1	0.2	24.2	0.965	Contact Map
2gfpA	2	0.7134	11.9	0.97	Contact Map
4he8J	1	0.3093	7.4	0.972	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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