GREMLIN Database
YJCO - Uncharacterized protein YjcO
UniProt: P0AF56 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG11951
Length: 229 (186)
Sequences: 27655 (24461)
Seq/√Len: 1793.6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
161_D164_K3.0451.00
121_D124_K2.9991.00
85_D88_Q2.9971.00
50_D53_K2.9121.00
145_Q168_Y2.7851.00
18_N21_E2.6831.00
105_E128_L2.6261.00
38_Q57_W2.6161.00
70_C92_L2.4071.00
74_A93_A2.3811.00
109_A129_L2.3381.00
42_A58_A2.2691.00
108_L128_L2.2381.00
130_E148_L2.1991.00
149_G169_F2.1961.00
148_L168_Y2.1321.00
41_L57_W2.0941.00
182_E207_W2.0871.00
73_L92_L1.9901.00
59_Q73_L1.9871.00
94_E108_L1.9701.00
126_I130_E1.9291.00
10_F26_Y1.9091.00
27_L41_L1.8981.00
152_Y168_Y1.8931.00
45_W53_K1.8671.00
152_Y164_K1.8531.00
45_W57_W1.8501.00
26_Y40_F1.8361.00
129_L147_L1.7941.00
112_L128_L1.7461.00
13_F25_Q1.7291.00
77_K92_L1.7211.00
58_A72_L1.6911.00
77_K88_Q1.6781.00
112_L124_K1.6631.00
93_A107_T1.5851.00
166_T170_K1.5471.00
186_G208_L1.4991.00
170_K185_A1.4921.00
55_E59_Q1.4851.00
126_I152_Y1.4851.00
13_F21_E1.4491.00
138_N141_A1.4311.00
90_K94_E1.4211.00
126_I159_K1.3991.00
73_L77_K1.3531.00
55_E77_K1.3221.00
145_Q171_R1.3201.00
96_A104_G1.3021.00
148_L152_Y1.2911.00
23_G45_W1.2821.00
23_G48_S1.2781.00
12_T16_H1.2681.00
108_L112_L1.2511.00
205_L209_N1.2321.00
132_A144_A1.2291.00
41_L45_W1.2191.00
23_G27_L1.2111.00
13_F18_N1.2081.00
105_E131_N1.2051.00
169_F184_W1.1911.00
133_S145_Q1.1871.00
152_Y161_D1.1831.00
38_Q60_K1.1751.00
189_F207_W1.1691.00
55_E83_S1.1691.00
45_W50_D1.1661.00
90_K112_L1.1611.00
164_K167_W1.1481.00
70_C95_K1.1261.00
90_K119_K1.1061.00
112_L121_D1.0971.00
183_Y187_M1.0931.00
29_A37_A1.0881.00
113_V147_L1.0821.00
126_I148_L1.0791.00
131_N135_D1.0551.00
61_A69_A1.0541.00
57_W60_K1.0521.00
150_L184_W1.0431.00
173_S182_E1.0381.00
77_K85_D1.0361.00
166_T189_F1.0321.00
39_Y43_D1.0271.00
141_A144_A1.0231.00
43_D72_L1.0191.00
124_K127_S1.0151.00
71_A75_Q1.0141.00
20_S48_S1.0081.00
146_M150_L1.0031.00
62_A70_C1.0001.00
42_A61_A0.9951.00
192_G195_G0.9881.00
75_Q107_T0.9811.00
109_A125_A0.9731.00
195_G203_K0.9691.00
34_D37_A0.9661.00
149_G172_S0.9651.00
185_A189_F0.9571.00
106_V147_L0.9481.00
189_F203_K0.9451.00
53_K56_Y0.9431.00
30_A38_Q0.9351.00
88_Q91_V0.9321.00
66_D69_A0.9311.00
97_A105_E0.9291.00
149_G165_A0.9291.00
146_M184_W0.9251.00
166_T192_G0.9251.00
90_K108_L0.9121.00
171_R175_I0.9111.00
153_A184_W0.9091.00
186_G204_A0.9091.00
55_E73_L0.9081.00
70_C96_A0.9031.00
60_K64_S0.9031.00
122_Y151_I0.8961.00
106_V144_A0.8901.00
52_S83_S0.8821.00
126_I151_I0.8811.00
110_H147_L0.8801.00
106_V110_H0.8751.00
92_L95_K0.8721.00
38_Q61_A0.8711.00
46_F72_L0.8701.00
43_D47_S0.8701.00
11_L40_F0.8701.00
14_F40_F0.8691.00
75_Q78_I0.8661.00
35_R61_A0.8511.00
109_A132_A0.8471.00
23_G41_L0.8461.00
72_L75_Q0.8451.00
184_W187_M0.8441.00
133_S144_A0.8431.00
42_A54_A0.8431.00
39_Y72_L0.8421.00
185_A207_W0.8411.00
101_S104_G0.8281.00
145_Q172_S0.8271.00
178_T181_S0.8191.00
105_E135_D0.8181.00
55_E76_I0.8171.00
123_P159_K0.8171.00
182_E210_L0.8171.00
207_W210_L0.8071.00
128_L131_N0.8061.00
105_E132_A0.7981.00
113_V154_N0.7951.00
21_E24_S0.7931.00
183_Y186_G0.7911.00
78_I107_T0.7781.00
97_A104_G0.7761.00
67_A96_A0.7751.00
153_A162_D0.7701.00
131_N134_E0.7701.00
90_K111_I0.7681.00
76_I83_S0.7681.00
74_A89_A0.7611.00
43_D46_F0.7611.00
147_L150_L0.7591.00
10_F29_A0.7571.00
150_L153_A0.7541.00
87_P119_K0.7501.00
166_T188_M0.7471.00
113_V122_Y0.7441.00
19_D44_S0.7331.00
193_E201_K0.7321.00
171_R174_A0.7281.00
86_Y111_I0.7261.00
142_V172_S0.7241.00
25_Q28_K0.7231.00
11_L15_A0.7181.00
166_T185_A0.7161.00
30_A41_L0.7151.00
168_Y171_R0.7131.00
163_D192_G0.7121.00
23_G44_S0.7111.00
187_M191_N0.7101.00
60_K63_D0.7091.00
164_K168_Y0.7071.00
110_H113_V0.7061.00
38_Q64_S0.7021.00
186_G211_S0.7021.00
132_A135_D0.6981.00
210_L213_M0.6941.00
102_K132_A0.6931.00
122_Y154_N0.6911.00
113_V151_I0.6901.00
39_Y66_D0.6891.00
78_I86_Y0.6871.00
46_F79_T0.6851.00
110_H114_N0.6831.00
151_I159_K0.6831.00
203_K206_H0.6821.00
62_A69_A0.6821.00
124_K128_L0.6801.00
88_Q92_L0.6751.00
113_V129_L0.6721.00
14_F26_Y0.6701.00
210_L214_E0.6701.00
172_S181_S0.6691.00
153_A169_F0.6691.00
74_A96_A0.6671.00
78_I89_A0.6651.00
40_F43_D0.6631.00
153_A191_N0.6621.00
97_A108_L0.6571.00
24_S28_K0.6571.00
78_I114_N0.6561.00
78_I111_I0.6561.00
71_A104_G0.6521.00
39_Y69_A0.6471.00
14_F44_S0.6441.00
95_K98_Q0.6421.00
190_L208_L0.6411.00
122_Y159_K0.6391.00
46_F76_I0.6381.00
106_V141_A0.6351.00
46_F51_L0.6331.00
59_Q92_L0.6141.00
62_A73_L0.6131.00
44_S48_S0.6121.00
51_L79_T0.6101.00
86_Y114_N0.6081.00
113_V125_A0.6071.00
14_F19_D0.6061.00
71_A107_T0.6031.00
167_W171_R0.6001.00
111_I119_K0.5991.00
129_L151_I0.5991.00
107_T110_H0.5981.00
51_L76_I0.5931.00
55_E85_D0.5911.00
30_A37_A0.5911.00
126_I161_D0.5871.00
162_D191_N0.5871.00
150_L154_N0.5791.00
75_Q79_T0.5781.00
145_Q175_I0.5771.00
53_K57_W0.5721.00
166_T195_G0.5711.00
56_Y60_K0.5711.00
128_L132_A0.5701.00
162_D188_M0.5701.00
14_F47_S0.5681.00
172_S175_I0.5631.00
102_K138_N0.5621.00
188_M192_G0.5561.00
106_V132_A0.5531.00
173_S181_S0.5481.00
201_K205_L0.5471.00
61_A64_S0.5461.00
89_A93_A0.5421.00
91_V95_K0.5421.00
153_A165_A0.5401.00
10_F22_P0.5401.00
130_E168_Y0.5371.00
130_E134_E0.5301.00
170_K174_A0.5281.00
167_W170_K0.5281.00
57_W61_A0.5271.00
90_K121_D0.5221.00
127_S131_N0.5211.00
150_L169_F0.5201.00
22_P44_S0.5191.00
19_D23_G0.5171.00
187_M190_L0.5121.00
162_D166_T0.5111.00
22_P26_Y0.5101.00
71_A101_S0.5101.00
94_E98_Q0.5061.00
51_L55_E0.5061.00
110_H129_L0.5051.00
59_Q77_K0.5051.00
206_H210_L0.5031.00
58_A76_I0.5021.00
25_Q29_A0.5001.00
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4ui9C 2 0.917 99.9 0.235 Contact Map
3dssA 1 0.917 99.9 0.236 Contact Map
4rg9A 2 0.8253 99.9 0.241 Contact Map
4ui9J 2 0.917 99.9 0.246 Contact Map
1w3bA 2 0.8996 99.9 0.253 Contact Map
4l9pA 1 0.8996 99.9 0.256 Contact Map
4ui9F 2 0.9083 99.9 0.256 Contact Map
3q7aA 1 0.8821 99.8 0.257 Contact Map
4uzyA 1 0.8646 99.8 0.258 Contact Map
3rjvA 1 0.8952 99.8 0.261 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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