GHXP - ECOLI - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

GHXP - Guanine/hypoxanthine permease GhxP

UniProt:	P0AF52	Sequences: MSTPSARTGGSLDAWFKISQRGSTVRQEVVAGLTTFLAMVYSVIVVPGMLGKAGFPPAAVFVATCLVAGLGSIVMGLWANLPLAIGCAISLTAFTAFSLVLGQHISVPVALGAVFLMGVLFTVISATGIRSWILRNLPHGVAHGTGIGIGLFLLLIAANGVGLVIKNPLDGLPVALGDFATFPVIMSLVGLAVIIGLEKLKVPGGILLTIIGISIVGLIFDPNVHFSGVFAMPSLSDENGNSLIGSLDIMGALNPVVLPSVLALVMTAVFDATGTIRAVAGQANLLDKDGQIIDGGKALTTDSMSSVFSGLVGAAPAAVYIESAAGTAAGGKTGLTAITVGVLFLLILFLSPLSYLVPGYATAPALMYVGLLMLSNVAKIDFADFVDAMAGLVTAVFIVLTCNIVTGIMIGFATLVIGRLVSGEWRKLNIGTVVIAVALVTFYAGGWAI	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG11939
Length:	449 (386)
Sequences:	10718 (6281)
Seq/√Len:	319.7

ECOLI - GHXP GHXQ ADEP ADEQ DAUA
BACSU - PBUG YVDB YBAR PBUO
HALSA - Q9HNG4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
115_F	310_G	3.619	1.00
161_V	187_S	3.361	1.00
29_V	339_T	3.327	1.00
397_F	410_I	3.196	1.00
393_V	414_T	3.108	1.00
76_G	338_I	2.975	1.00
125_S	300_T	2.952	1.00
25_V	335_L	2.837	1.00
73_I	341_G	2.598	1.00
74_V	308_F	2.555	1.00
78_W	304_M	2.507	1.00
131_S	296_G	2.498	1.00
331_G	336_T	2.464	1.00
167_N	175_A	2.359	1.00
230_F	233_P	2.340	1.00
172_L	175_A	2.317	1.00
210_I	214_S	2.291	1.00
67_V	317_A	2.237	1.00
73_I	338_I	2.208	1.00
119_V	123_V	2.202	1.00
32_G	339_T	2.177	1.00
231_A	234_S	2.167	1.00
52_K	97_F	2.115	1.00
123_V	127_T	2.099	1.00
326_G	336_T	2.089	1.00
208_L	214_S	2.067	1.00
191_L	368_Y	2.065	1.00
179_F	184_V	2.061	1.00
261_V	265_V	2.053	1.00
375_S	378_A	2.037	1.00
201_K	204_G	2.012	1.00
69_G	345_L	2.011	1.00
342_V	346_L	2.001	1.00
394_T	411_G	1.999	1.00
185_I	189_V	1.965	1.00
208_L	211_I	1.950	1.00
119_V	307_V	1.949	1.00
424_E	427_K	1.932	1.00
115_F	307_V	1.924	1.00
215_I	219_I	1.910	1.00
126_A	300_T	1.899	1.00
71_G	305_S	1.893	1.00
239_N	242_S	1.873	1.00
403_N	406_T	1.865	1.00
309_S	314_A	1.856	1.00
122_T	307_V	1.856	1.00
214_S	218_L	1.840	1.00
190_G	364_P	1.821	1.00
116_L	261_V	1.816	1.00
213_I	217_G	1.815	1.00
189_V	193_V	1.806	1.00
265_V	271_D	1.794	1.00
84_A	340_V	1.772	1.00
264_L	271_D	1.765	1.00
31_A	331_G	1.764	1.00
190_G	213_I	1.756	1.00
397_F	401_T	1.755	1.00
191_L	364_P	1.726	1.00
74_V	78_W	1.715	1.00
205_G	208_L	1.701	1.00
216_V	220_F	1.696	1.00
214_S	217_G	1.687	1.00
339_T	343_L	1.680	1.00
83_L	319_V	1.678	1.00
187_S	364_P	1.678	1.00
25_V	29_V	1.668	1.00
228_G	231_A	1.650	1.00
240_G	245_G	1.649	1.00
69_G	341_G	1.647	1.00
261_V	264_L	1.629	1.00
24_T	332_K	1.615	1.00
72_S	341_G	1.613	1.00
261_V	271_D	1.611	1.00
31_A	336_T	1.591	1.00
93_A	315_A	1.542	1.00
248_D	251_G	1.533	1.00
209_T	213_I	1.528	1.00
27_Q	332_K	1.520	1.00
208_L	221_D	1.494	1.00
396_V	400_L	1.494	1.00
74_V	301_T	1.492	1.00
198_E	372_L	1.466	1.00
308_F	312_V	1.462	1.00
33_L	343_L	1.456	1.00
378_A	382_F	1.453	1.00
385_F	389_M	1.452	1.00
192_A	196_G	1.448	1.00
208_L	212_G	1.445	1.00
25_V	339_T	1.439	1.00
210_I	218_L	1.438	1.00
118_G	307_V	1.432	1.00
38_A	325_A	1.427	1.00
89_I	92_T	1.408	1.00
240_G	243_L	1.380	1.00
279_V	327_T	1.374	1.00
194_I	209_T	1.371	1.00
122_T	300_T	1.367	1.00
186_M	213_I	1.356	1.00
124_I	129_I	1.347	1.00
210_I	213_I	1.347	1.00
260_S	264_L	1.340	1.00
419_R	427_K	1.338	1.00
208_L	218_L	1.336	1.00
29_V	33_L	1.331	1.00
161_V	363_A	1.324	1.00
294_D	297_K	1.323	1.00
36_F	343_L	1.318	1.00
150_G	370_G	1.306	1.00
217_G	222_P	1.301	1.00
229_V	235_L	1.299	1.00
108_P	248_D	1.298	1.00
392_L	396_V	1.296	1.00
195_I	368_Y	1.294	1.00
218_L	221_D	1.292	1.00
220_F	224_V	1.273	1.00
71_G	317_A	1.273	1.00
304_M	308_F	1.272	1.00
191_L	195_I	1.254	1.00
247_L	250_M	1.250	1.00
123_V	126_A	1.245	1.00
219_I	223_N	1.245	1.00
183_P	360_Y	1.236	1.00
335_L	339_T	1.232	1.00
76_G	337_A	1.232	1.00
180_A	183_P	1.226	1.00
375_S	379_K	1.225	1.00
210_I	221_D	1.222	1.00
74_V	304_M	1.218	1.00
194_I	198_E	1.214	1.00
28_E	332_K	1.207	1.00
289_D	327_T	1.203	1.00
159_N	173_P	1.199	1.00
196_G	200_L	1.199	1.00
242_S	245_G	1.187	1.00
213_I	218_L	1.186	1.00
77_L	338_I	1.183	1.00
198_E	368_Y	1.182	1.00
69_G	73_I	1.182	1.00
214_S	221_D	1.177	1.00
219_I	222_P	1.171	1.00
245_G	248_D	1.168	1.00
175_A	178_D	1.164	1.00
26_R	30_V	1.162	1.00
338_I	342_V	1.162	1.00
151_L	399_V	1.161	1.00
417_I	421_V	1.161	1.00
154_L	367_M	1.161	1.00
128_G	132_W	1.158	1.00
188_L	192_A	1.158	1.00
393_V	397_F	1.156	1.00
244_I	247_L	1.156	1.00
194_I	368_Y	1.153	1.00
206_I	210_I	1.152	1.00
167_N	171_G	1.151	1.00
262_L	271_D	1.149	1.00
376_N	379_K	1.147	1.00
221_D	224_V	1.136	1.00
217_G	221_D	1.132	1.00
215_I	218_L	1.131	1.00
256_V	259_P	1.130	1.00
297_K	300_T	1.126	1.00
206_I	365_A	1.121	1.00
161_V	367_M	1.119	1.00
78_W	301_T	1.116	1.00
120_L	258_L	1.113	1.00
131_S	135_R	1.109	1.00
251_G	255_P	1.106	1.00
341_G	345_L	1.097	1.00
207_L	210_I	1.096	1.00
260_S	263_A	1.092	1.00
258_L	261_V	1.089	1.00
300_T	304_M	1.089	1.00
249_I	252_A	1.089	1.00
99_L	260_S	1.086	1.00
147_I	395_A	1.086	1.00
178_D	181_T	1.084	1.00
257_V	260_S	1.077	1.00
99_L	264_L	1.073	1.00
112_G	249_I	1.071	1.00
326_G	331_G	1.070	1.00
265_V	269_V	1.068	1.00
171_G	174_V	1.067	1.00
87_C	322_E	1.067	1.00
211_I	218_L	1.064	1.00
386_V	422_S	1.063	1.00
181_T	185_I	1.063	1.00
211_I	214_S	1.062	1.00
92_T	264_L	1.060	1.00
204_G	208_L	1.057	1.00
182_F	185_I	1.053	1.00
120_L	265_V	1.052	1.00
122_T	303_S	1.052	1.00
276_I	280_A	1.050	1.00
113_A	257_V	1.049	1.00
49_M	89_I	1.048	1.00
391_G	395_A	1.046	1.00
190_G	361_A	1.046	1.00
106_S	109_V	1.045	1.00
262_L	265_V	1.038	1.00
227_S	230_F	1.038	1.00
346_L	349_F	1.029	1.00
187_S	367_M	1.020	1.00
116_L	257_V	1.020	1.00
304_M	307_V	1.018	1.00
241_N	245_G	1.016	1.00
157_A	367_M	1.015	1.00
420_L	425_W	1.008	1.00
143_H	379_K	1.004	1.00
205_G	209_T	1.003	1.00
250_M	253_L	1.001	1.00
140_G	387_D	1.000	1.00
181_T	184_V	0.998	1.00
31_A	35_T	0.998	1.00
336_T	340_V	0.997	1.00
222_P	226_F	0.994	1.00
209_T	214_S	0.993	1.00
205_G	210_I	0.992	1.00
384_D	387_D	0.991	1.00
418_G	422_S	0.991	1.00
276_I	298_A	0.974	1.00
243_L	246_S	0.972	1.00
151_L	395_A	0.971	1.00
230_F	234_S	0.969	1.00
122_T	126_A	0.968	1.00
147_I	150_G	0.965	1.00
184_V	188_L	0.964	1.00
210_I	223_N	0.959	1.00
398_I	407_G	0.959	1.00
75_M	86_G	0.953	1.00
268_A	316_P	0.948	1.00
248_D	253_L	0.947	1.00
251_G	254_N	0.946	1.00
144_G	394_T	0.946	1.00
266_M	271_D	0.943	1.00
83_L	327_T	0.942	1.00
70_L	308_F	0.942	1.00
213_I	361_A	0.940	1.00
213_I	216_V	0.931	1.00
184_V	187_S	0.928	1.00
216_V	219_I	0.928	1.00
347_I	350_L	0.927	1.00
207_L	211_I	0.921	1.00
139_H	143_H	0.917	1.00
267_T	270_F	0.915	1.00
114_V	310_G	0.915	1.00
266_M	270_F	0.901	1.00
165_I	168_P	0.900	1.00
117_M	264_L	0.899	1.00
231_A	235_L	0.899	1.00
229_V	233_P	0.897	1.00
305_S	317_A	0.897	1.00
217_G	223_N	0.894	1.00
189_V	216_V	0.894	1.00
59_A	315_A	0.892	1.00
96_A	316_P	0.892	1.00
171_G	175_A	0.891	1.00
264_L	269_V	0.891	1.00
59_A	63_A	0.890	1.00
339_T	342_V	0.890	1.00
252_A	255_P	0.890	1.00
155_L	400_L	0.889	1.00
183_P	187_S	0.887	1.00
128_G	296_G	0.887	1.00
160_G	363_A	0.887	1.00
305_S	308_F	0.887	1.00
24_T	27_Q	0.884	1.00
379_K	383_A	0.883	1.00
324_A	328_A	0.882	1.00
214_S	223_N	0.880	1.00
199_K	203_P	0.880	1.00
307_V	310_G	0.877	1.00
245_G	252_A	0.876	1.00
159_N	166_K	0.872	1.00
185_I	188_L	0.872	1.00
168_P	171_G	0.869	1.00
393_V	410_I	0.859	1.00
377_V	395_A	0.858	1.00
113_A	117_M	0.856	1.00
269_V	272_A	0.855	1.00
70_L	312_V	0.853	1.00
263_A	270_F	0.853	1.00
230_F	235_L	0.853	1.00
353_L	356_L	0.851	1.00
124_I	265_V	0.849	1.00
221_D	226_F	0.846	1.00
247_L	251_G	0.846	1.00
288_K	291_Q	0.846	1.00
179_F	182_F	0.846	1.00
387_D	390_A	0.845	1.00
276_I	279_V	0.844	1.00
195_I	389_M	0.843	1.00
154_L	370_G	0.842	1.00
155_L	159_N	0.841	1.00
335_L	338_I	0.841	1.00
52_K	96_A	0.840	1.00
115_F	311_L	0.839	1.00
248_D	254_N	0.838	1.00
239_N	243_L	0.836	1.00
195_I	371_L	0.834	1.00
208_L	223_N	0.832	1.00
113_A	260_S	0.831	1.00
374_L	377_V	0.829	1.00
48_G	52_K	0.827	1.00
63_A	107_V	0.826	1.00
259_P	263_A	0.826	1.00
243_L	247_L	0.823	1.00
59_A	100_V	0.822	1.00
197_L	208_L	0.821	1.00
247_L	311_L	0.817	1.00
46_V	344_F	0.817	1.00
206_I	209_T	0.816	1.00
263_A	271_D	0.816	1.00
414_T	418_G	0.816	1.00
381_D	388_A	0.815	1.00
112_G	116_L	0.813	1.00
229_V	232_M	0.813	1.00
88_A	318_A	0.813	1.00
81_L	298_A	0.812	1.00
207_L	221_D	0.808	1.00
307_V	311_L	0.808	1.00
117_M	316_P	0.805	1.00
86_G	302_D	0.799	1.00
232_M	235_L	0.797	1.00
277_R	281_G	0.797	1.00
117_M	265_V	0.795	1.00
117_M	268_A	0.795	1.00
218_L	222_P	0.794	1.00
78_W	300_T	0.792	1.00
150_G	374_L	0.791	1.00
29_V	335_L	0.789	1.00
78_W	297_K	0.789	1.00
205_G	214_S	0.788	1.00
208_L	224_V	0.787	1.00
358_P	361_A	0.786	1.00
388_A	392_L	0.785	1.00
261_V	269_V	0.785	1.00
265_V	272_A	0.785	1.00
110_A	114_V	0.784	1.00
262_L	266_M	0.784	1.00
97_F	101_L	0.782	1.00
401_T	406_T	0.782	1.00
46_V	49_M	0.780	1.00
409_M	413_A	0.774	1.00
406_T	409_M	0.774	1.00
264_L	272_A	0.773	1.00
45_V	48_G	0.773	1.00
220_F	223_N	0.773	1.00
32_G	36_F	0.767	0.99
195_I	199_K	0.766	0.99
207_L	214_S	0.766	0.99
263_A	267_T	0.764	0.99
210_I	224_V	0.763	0.99
206_I	214_S	0.762	0.99
53_A	60_V	0.759	0.99
68_A	72_S	0.757	0.99
65_C	69_G	0.754	0.99
27_Q	31_A	0.754	0.99
187_S	360_Y	0.753	0.99
197_L	201_K	0.749	0.99
229_V	234_S	0.748	0.99
28_E	333_T	0.746	0.99
266_M	269_V	0.744	0.99
241_N	250_M	0.742	0.99
111_L	310_G	0.741	0.99
264_L	267_T	0.739	0.99
211_I	215_I	0.738	0.99
267_T	271_D	0.735	0.99
218_L	223_N	0.734	0.99
265_V	268_A	0.733	0.99
419_R	424_E	0.732	0.99
98_S	102_G	0.731	0.99
222_P	225_H	0.731	0.99
240_G	244_I	0.731	0.99
146_G	278_A	0.725	0.99
176_L	179_F	0.722	0.99
102_G	260_S	0.722	0.99
258_L	265_V	0.721	0.99
347_I	354_S	0.719	0.99
46_V	92_T	0.715	0.99
81_L	292_I	0.709	0.99
62_V	348_L	0.707	0.99
268_A	306_S	0.706	0.99
325_A	329_A	0.706	0.99
125_S	131_S	0.706	0.99
166_K	172_L	0.704	0.99
124_I	299_L	0.704	0.99
386_V	419_R	0.704	0.99
210_I	217_G	0.702	0.99
92_T	96_A	0.702	0.99
285_L	288_K	0.701	0.99
281_G	286_L	0.701	0.99
49_M	52_K	0.699	0.99
148_G	398_I	0.699	0.99
245_G	250_M	0.696	0.99
135_R	291_Q	0.690	0.99
211_I	221_D	0.690	0.99
378_A	383_A	0.690	0.99
196_G	421_V	0.686	0.99
67_V	71_G	0.685	0.99
346_L	350_L	0.684	0.99
112_G	252_A	0.679	0.99
114_V	316_P	0.678	0.99
250_M	254_N	0.677	0.99
240_G	252_A	0.677	0.99
32_G	343_L	0.676	0.99
340_V	347_I	0.675	0.99
148_G	399_V	0.673	0.99
148_G	395_A	0.672	0.99
268_A	272_A	0.672	0.99
245_G	249_I	0.669	0.99
193_V	197_L	0.668	0.99
73_I	77_L	0.667	0.99
386_V	418_G	0.667	0.99
397_F	406_T	0.666	0.99
155_L	174_V	0.664	0.99
209_T	217_G	0.662	0.99
221_D	225_H	0.662	0.99
368_Y	372_L	0.661	0.99
81_L	294_D	0.661	0.99
240_G	250_M	0.661	0.99
263_A	266_M	0.660	0.98
241_N	246_S	0.658	0.98
308_F	311_L	0.656	0.98
194_I	364_P	0.654	0.98
260_S	267_T	0.654	0.98
211_I	224_V	0.649	0.98
140_G	144_G	0.649	0.98
262_L	272_A	0.649	0.98
89_I	319_V	0.648	0.98
268_A	271_D	0.647	0.98
266_M	272_A	0.645	0.98
245_G	311_L	0.645	0.98
388_A	391_G	0.644	0.98
228_G	234_S	0.642	0.98
189_V	213_I	0.640	0.98
378_A	381_D	0.640	0.98
259_P	262_L	0.640	0.98
46_V	64_T	0.638	0.98
116_L	120_L	0.638	0.98
260_S	270_F	0.634	0.98
261_V	270_F	0.631	0.98
85_I	317_A	0.627	0.98
243_L	248_D	0.627	0.98
47_P	58_A	0.625	0.98
264_L	268_A	0.624	0.98
260_S	271_D	0.621	0.98
22_G	26_R	0.620	0.98
419_R	423_G	0.620	0.98
108_P	111_L	0.620	0.98
85_I	337_A	0.618	0.98
92_T	117_M	0.612	0.98
286_L	292_I	0.611	0.98
48_G	51_G	0.610	0.97
103_Q	106_S	0.610	0.97
75_M	85_I	0.609	0.97
154_L	392_L	0.609	0.97
241_N	244_I	0.608	0.97
277_R	280_A	0.607	0.97
214_S	224_V	0.605	0.97
108_P	246_S	0.604	0.97
111_L	114_V	0.603	0.97
303_S	307_V	0.603	0.97
180_A	184_V	0.601	0.97
75_M	301_T	0.601	0.97
68_A	344_F	0.600	0.97
118_G	306_S	0.600	0.97
258_L	264_L	0.599	0.97
125_S	303_S	0.597	0.97
96_A	110_A	0.596	0.97
31_A	329_A	0.595	0.97
198_E	205_G	0.595	0.97
197_L	202_V	0.594	0.97
249_I	253_L	0.592	0.97
380_I	388_A	0.591	0.97
121_F	268_A	0.590	0.97
415_L	419_R	0.588	0.97
65_C	344_F	0.588	0.97
210_I	222_P	0.587	0.97
100_V	110_A	0.587	0.97
190_G	194_I	0.586	0.97
120_L	261_V	0.585	0.97
26_R	29_V	0.585	0.97
173_P	176_L	0.585	0.97
49_M	68_A	0.582	0.97
377_V	391_G	0.578	0.97
280_A	284_N	0.578	0.97
203_P	329_A	0.578	0.97
410_I	414_T	0.576	0.96
262_L	269_V	0.575	0.96
172_L	177_G	0.574	0.96
73_I	76_G	0.574	0.96
305_S	309_S	0.574	0.96
197_L	205_G	0.572	0.96
91_L	96_A	0.572	0.96
88_A	322_E	0.571	0.96
281_G	379_K	0.570	0.96
83_L	331_G	0.570	0.96
205_G	221_D	0.569	0.96
89_I	320_Y	0.569	0.96
71_G	309_S	0.569	0.96
227_S	231_A	0.568	0.96
257_V	261_V	0.565	0.96
239_N	252_A	0.564	0.96
70_L	309_S	0.562	0.96
174_V	177_G	0.561	0.96
134_L	137_L	0.561	0.96
421_V	425_W	0.560	0.96
264_L	270_F	0.559	0.96
306_S	316_P	0.558	0.96
155_L	158_A	0.556	0.96
138_P	415_L	0.555	0.96
85_I	91_L	0.555	0.96
416_V	420_L	0.554	0.96
300_T	307_V	0.554	0.96
144_G	391_G	0.552	0.96
120_L	124_I	0.552	0.96
227_S	232_M	0.551	0.95
75_M	302_D	0.548	0.95
240_G	246_S	0.548	0.95
228_G	232_M	0.548	0.95
147_I	374_L	0.545	0.95
132_W	135_R	0.545	0.95
128_G	131_S	0.544	0.95
256_V	260_S	0.544	0.95
195_I	198_E	0.544	0.95
63_A	313_G	0.543	0.95
214_S	357_V	0.543	0.95
110_A	113_A	0.543	0.95
190_G	193_V	0.542	0.95
328_A	372_L	0.542	0.95
263_A	269_V	0.541	0.95
261_V	272_A	0.541	0.95
166_K	173_P	0.540	0.95
235_L	240_G	0.540	0.95
303_S	306_S	0.535	0.95
186_M	190_G	0.535	0.95
193_V	209_T	0.534	0.95
246_S	251_G	0.533	0.95
386_V	390_A	0.533	0.95
194_I	206_I	0.533	0.95
206_I	217_G	0.533	0.95
258_L	270_F	0.533	0.95
49_M	96_A	0.532	0.95
192_A	195_I	0.532	0.95
96_A	100_V	0.532	0.95
381_D	385_F	0.531	0.94
33_L	339_T	0.531	0.94
213_I	222_P	0.530	0.94
90_S	95_T	0.529	0.94
189_V	192_A	0.529	0.94
27_Q	30_V	0.529	0.94
75_M	317_A	0.528	0.94
247_L	312_V	0.527	0.94
190_G	209_T	0.526	0.94
136_N	424_E	0.525	0.94
45_V	340_V	0.524	0.94
83_L	285_L	0.524	0.94
100_V	106_S	0.523	0.94
94_F	97_F	0.523	0.94
95_T	264_L	0.522	0.94
75_M	79_A	0.522	0.94
272_A	318_A	0.518	0.94
423_G	426_R	0.516	0.94
259_P	269_V	0.514	0.94
208_L	220_F	0.512	0.93
94_F	98_S	0.512	0.93
218_L	356_L	0.511	0.93
83_L	291_Q	0.510	0.93
55_F	60_V	0.509	0.93
30_V	34_T	0.508	0.93
200_L	204_G	0.508	0.93
59_A	107_V	0.508	0.93
205_G	213_I	0.507	0.93
248_D	252_A	0.505	0.93
418_G	421_V	0.505	0.93
87_C	91_L	0.502	0.93
385_F	388_A	0.501	0.93
143_H	376_N	0.500	0.93
243_L	251_G	0.500	0.93

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3qe7A	2	0.8486	100	0.538	Contact Map
4z7fA	2	0.3252	9	0.972	Contact Map
3o7qA	1	0.4143	8.8	0.972	Contact Map
2zy9A	2	0.2561	7.1	0.973	Contact Map
3orgA	2	0.5612	3.9	0.976	Contact Map
4b19A	1	0.0668	3.9	0.976	Contact Map
4bx9C	1	0.0735	3.6	0.977	Contact Map
1btsA	1	0.0468	3.4	0.977	Contact Map
4rgwA	1	0	3.2	0.977	Contact Map
4huqS	1	0.3185	2.8	0.978	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0118 seconds.