GREMLIN Database
YJBR - Uncharacterized protein YjbR
UniProt: P0AF50 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG11936
Length: 118 (113)
Sequences: 1262 (879)
Seq/√Len: 82.7

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
49_S73_L4.6211.00
13_K97_D4.1201.00
70_S80_T3.0551.00
67_V95_L2.8521.00
52_T57_A2.5971.00
9_Y97_D2.4131.00
16_A36_F2.3631.00
47_A80_T2.2601.00
56_L98_A2.1131.00
61_R79_S2.1021.00
77_H102_Q2.0091.00
19_S30_K1.9141.00
7_L18_Q1.8951.00
68_R82_Y1.8361.00
66_D87_L1.8301.00
37_A50_L1.8181.00
24_W28_Q1.7311.00
67_V91_Q1.6411.00
66_D85_G1.6381.00
7_L29_I1.6331.00
23_D28_Q1.6181.00
31_V103_A1.6021.00
23_D26_A1.5921.00
35_L38_M1.5401.00
21_H28_Q1.5170.99
108_P112_R1.4630.99
104_V115_L1.4420.99
20_V27_T1.4390.99
28_Q35_L1.4320.99
10_C37_A1.4300.99
111_K114_L1.4160.99
32_E104_V1.3970.99
37_A48_V1.3540.99
66_D86_S1.3360.99
17_E33_D1.3240.99
52_T98_A1.2880.98
56_L94_Y1.2770.98
49_S70_S1.2340.98
18_Q27_T1.2280.98
30_K35_L1.1900.97
9_Y13_K1.1700.97
108_P111_K1.1700.97
91_Q94_Y1.1530.96
53_S57_A1.1460.96
22_N72_H1.1450.96
31_V104_V1.1230.96
104_V107_L1.1190.96
91_Q95_L1.1090.96
66_D84_D1.0710.95
104_V112_R1.0630.94
58_E62_Q1.0630.94
32_E115_L1.0610.94
79_S95_L1.0490.94
49_S72_H1.0410.94
56_L59_L1.0360.94
38_M73_L1.0160.93
59_L63_Q1.0090.93
21_H30_K0.9670.91
57_A61_R0.9510.90
52_T56_L0.9380.90
3_I7_L0.9380.90
81_V92_I0.9350.90
45_R82_Y0.9260.89
6_L48_V0.9120.88
7_L20_V0.9060.88
28_Q31_V0.9020.88
6_L39_V0.8930.87
19_S28_Q0.8740.86
108_P114_L0.8660.86
52_T79_S0.8620.85
25_K40_K0.8580.85
23_D30_K0.8520.85
32_E111_K0.8490.85
57_A79_S0.8480.85
57_A98_A0.8410.84
35_L73_L0.8380.84
6_L37_A0.8350.84
89_D93_Y0.8300.83
10_C96_V0.8280.83
99_S102_Q0.8270.83
9_Y93_Y0.8270.83
88_P91_Q0.8250.83
54_P77_H0.8210.83
87_L91_Q0.8010.81
81_V95_L0.7960.81
72_H75_K0.7850.80
5_E93_Y0.7840.80
83_L88_P0.7770.79
22_N28_Q0.7760.79
108_P113_K0.7700.78
26_A30_K0.7690.78
9_Y12_A0.7650.78
33_D111_K0.7570.77
48_V96_V0.7520.77
3_I27_T0.7430.76
66_D82_Y0.7400.76
98_A102_Q0.7390.75
42_V45_R0.7280.74
87_L95_L0.7200.74
49_S69_P0.7170.73
83_L92_I0.7140.73
100_Y115_L0.7080.72
7_L11_M0.6900.70
4_S7_L0.6820.70
49_S80_T0.6810.69
26_A35_L0.6680.68
94_Y98_A0.6650.68
11_M16_A0.6640.67
15_G32_E0.6640.67
79_S96_V0.6610.67
65_S86_S0.6530.66
32_E107_L0.6520.66
92_I110_E0.6430.65
11_M18_Q0.6420.65
83_L95_L0.6410.65
110_E114_L0.6360.64
102_Q105_N0.6350.64
49_S99_S0.6270.63
56_L101_Q0.6220.62
65_S68_R0.6190.62
69_P74_N0.6180.62
98_A101_Q0.6170.62
38_M99_S0.6140.61
19_S33_D0.6140.61
10_C18_Q0.6120.61
102_Q106_L0.6110.61
81_V87_L0.6090.61
18_Q21_H0.6080.61
69_P75_K0.6080.61
109_E112_R0.6060.60
103_A106_L0.6010.60
4_S8_Q0.5980.59
70_S73_L0.5980.59
27_T39_V0.5980.59
92_I111_K0.5920.59
50_L81_V0.5890.58
74_N77_H0.5880.58
83_L96_V0.5800.57
38_M80_T0.5680.56
56_L91_Q0.5640.55
47_A82_Y0.5630.55
41_E46_P0.5590.54
30_K80_T0.5570.54
26_A38_M0.5570.54
65_S85_G0.5530.54
55_E62_Q0.5510.53
15_G101_Q0.5500.53
59_L76_A0.5490.53
5_E40_K0.5480.53
54_P102_Q0.5480.53
55_E76_A0.5480.53
13_K100_Y0.5460.53
53_S98_A0.5440.52
20_V24_W0.5390.52
53_S79_S0.5380.52
26_A40_K0.5360.51
37_A83_L0.5330.51
42_V46_P0.5310.51
63_Q94_Y0.5310.51
107_L111_K0.5300.51
21_H24_W0.5290.50
45_R83_L0.5260.50
32_E108_P0.5230.50
42_V83_L0.5210.49
6_L46_P0.5200.49
97_D101_Q0.5200.49
64_H87_L0.5130.48
64_H90_S0.5060.47
51_K78_W0.5000.47
21_H72_H0.5000.47
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2fkiA 1 1 100 0.235 Contact Map
2a1vA 1 1 100 0.253 Contact Map
2kfpA 1 0.9407 100 0.304 Contact Map
2od0A 2 0.7881 98.8 0.768 Contact Map
2kl4A 1 0.822 90.3 0.892 Contact Map
2i8dA 2 0.8644 89.2 0.895 Contact Map
2oc6A 1 0.8898 88.7 0.896 Contact Map
3ituA 2 0.9661 35.9 0.93 Contact Map
3v93A 3 0.9746 35.2 0.931 Contact Map
1tkeA 1 1 32.7 0.932 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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