GREMLIN Database
YJBQ - UPF0047 protein YjbQ
UniProt: P0AF48 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG11935
Length: 138 (129)
Sequences: 2781 (1832)
Seq/√Len: 161.3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
5_K29_D3.4541.00
23_I117_I2.9621.00
6_T130_R2.6791.00
48_S122_H2.6461.00
105_H110_Q2.6331.00
38_L133_A2.5061.00
61_H78_E2.4091.00
65_R78_E2.2271.00
22_E25_N2.2051.00
42_L47_A2.1521.00
33_V135_L2.1351.00
7_L133_A2.1301.00
50_T94_S2.1131.00
8_T128_S2.0751.00
43_Q130_R2.0301.00
26_Q133_A1.9891.00
40_L133_A1.9101.00
73_D88_P1.8911.00
24_L108_R1.8181.00
34_N106_K1.7721.00
58_T78_E1.7181.00
12_K15_G1.7061.00
35_I105_H1.6241.00
39_H101_V1.6181.00
66_F91_I1.5101.00
67_F96_L1.4921.00
37_L101_V1.4821.00
8_T130_R1.4801.00
18_L116_G1.4771.00
54_N116_G1.4751.00
14_R88_P1.4711.00
58_T81_Y1.4681.00
25_N29_D1.4491.00
66_F70_T1.3621.00
33_V104_V1.3151.00
74_N84_A1.2971.00
6_T43_Q1.2941.00
93_S98_T1.2771.00
68_L73_D1.2601.00
39_H134_T1.2571.00
71_V95_M1.2521.00
16_F120_G1.2381.00
64_E68_L1.2341.00
104_V135_L1.2241.00
69_R75_G1.2201.00
63_M94_S1.2191.00
10_S128_S1.2121.00
24_L109_I1.2101.00
23_I38_L1.2091.00
48_S96_L1.2051.00
41_L51_L1.1981.00
31_P135_L1.1981.00
38_L109_I1.1881.00
5_K26_Q1.1341.00
43_Q132_I1.1311.00
61_H65_R1.1251.00
10_S22_E1.1151.00
51_L102_L1.1111.00
19_V131_I1.1091.00
66_F77_Y1.1001.00
7_L131_I1.0961.00
16_F67_F1.0840.99
27_L135_L1.0630.99
14_R73_D1.0560.99
66_F69_R1.0480.99
26_Q135_L1.0190.99
27_L104_V0.9990.99
66_F75_G0.9950.99
66_F71_V0.9860.99
21_D25_N0.9830.99
43_Q110_Q0.9820.99
103_P134_T0.9740.99
71_V77_Y0.9740.99
47_A119_L0.9700.99
102_L117_I0.9600.99
65_R69_R0.9470.99
37_L136_Q0.9450.99
6_T105_H0.9370.98
27_L31_P0.9330.98
72_P75_G0.9310.98
67_F120_G0.9170.98
42_L93_S0.9090.98
19_V23_I0.9070.98
58_T61_H0.8930.98
24_L28_A0.8920.98
96_L122_H0.8910.98
76_N80_D0.8810.98
25_N28_A0.8760.98
28_A108_R0.8740.98
55_C118_W0.8650.97
40_L100_L0.8510.97
21_D24_L0.8370.97
65_R75_G0.8280.97
71_V91_I0.8280.97
110_Q132_I0.8270.97
73_D92_K0.8200.97
50_T120_G0.8050.96
16_F118_W0.8020.96
27_L109_I0.7940.96
77_Y80_D0.7930.96
12_K22_E0.7870.96
38_L104_V0.7800.95
42_L49_L0.7730.95
9_L17_H0.7710.95
26_Q31_P0.7700.95
51_L111_T0.7700.95
50_T97_G0.7690.95
73_D77_Y0.7670.95
41_L103_P0.7620.95
102_L109_I0.7570.95
41_L102_L0.7570.95
60_R64_E0.7530.94
49_L100_L0.7520.94
51_L98_T0.7490.94
53_E114_W0.7460.94
38_L135_L0.7440.94
79_H82_E0.7390.94
35_I134_T0.7380.94
73_D124_I0.7360.94
6_T110_Q0.7320.94
35_I106_K0.7290.93
82_E85_D0.7280.93
39_H103_P0.7260.93
54_N118_W0.7240.93
28_A32_R0.7150.93
23_I40_L0.7110.93
68_L92_K0.7090.92
65_R76_N0.7000.92
124_I127_G0.6980.92
42_L119_L0.6930.92
103_P132_I0.6840.91
34_N107_G0.6710.90
46_S86_D0.6670.90
37_L134_T0.6650.90
55_C59_V0.6530.89
9_L22_E0.6470.89
7_L26_Q0.6420.88
41_L99_S0.6410.88
39_H99_S0.6410.88
22_E26_Q0.6390.88
16_F63_M0.6390.88
58_T116_G0.6370.88
87_M91_I0.6230.87
48_S100_L0.6180.86
40_L49_L0.6020.85
21_D108_R0.5990.84
55_C113_T0.5970.84
48_S120_G0.5920.84
35_I104_V0.5910.84
82_E86_D0.5910.84
94_S97_G0.5880.83
63_M91_I0.5850.83
11_A127_G0.5850.83
21_D28_A0.5810.83
77_Y91_I0.5750.82
83_G87_M0.5740.82
16_F60_R0.5690.81
85_D122_H0.5670.81
33_V36_G0.5660.81
52_N118_W0.5640.81
14_R64_E0.5620.81
53_E59_V0.5610.80
24_L27_L0.5570.80
23_I26_Q0.5570.80
35_I136_Q0.5570.80
80_D84_A0.5550.80
15_G121_E0.5490.79
44_H52_N0.5440.78
53_E129_R0.5440.78
26_Q29_D0.5430.78
49_L117_I0.5400.78
92_K120_G0.5400.78
16_F50_T0.5360.77
16_F52_N0.5350.77
44_H90_H0.5320.77
110_Q134_T0.5310.77
67_F95_M0.5300.77
21_D34_N0.5240.76
18_L54_N0.5230.76
89_S92_K0.5190.75
41_L100_L0.5170.75
54_N60_R0.5140.74
52_N63_M0.5130.74
55_C80_D0.5120.74
59_V87_M0.5120.74
46_S82_E0.5120.74
119_L131_I0.5080.74
67_F72_P0.5070.73
60_R71_V0.5060.73
105_H134_T0.5050.73
6_T132_I0.5050.73
11_A128_S0.5050.73
51_L118_W0.5010.73
27_L33_V0.5000.72
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2p6cA 3 0.9783 100 0.079 Contact Map
2p6hA 3 0.9638 100 0.087 Contact Map
1vphA 4 0.971 100 0.091 Contact Map
1vmjA 4 0.9783 100 0.096 Contact Map
1ve0A 3 0.9565 100 0.098 Contact Map
1vmhA 3 0.9275 100 0.138 Contact Map
1vmfA 3 0.9638 100 0.141 Contact Map
2cu5A 3 0.9275 100 0.15 Contact Map
2w1iA 1 0.2391 8.4 0.951 Contact Map
1mzrA 1 0.2536 8.3 0.951 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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