MIND - ECOLI - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

MIND - Septum site-determining protein MinD

UniProt:	P0AEZ3	Sequences: MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVILDINADAGKAYADTVERLLGEERPFRFIEEEKKGFLKRLFGG	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG10597
Length:	270 (235)
Sequences:	16940 (11007)
Seq/√Len:	718.0

ECOLI - MIND BCSQ MRP
BACSU - MIND SOJ YLXH SALA YWQD YVEL
HALSA - O51969 Q9HNF1 Q9HHZ7 Q9HHU2 Q9HQJ7 Q9HQY5 O54573 O51991 Q9HHL5
SULSO - Q97ZW4 Q981B3 Q97VX7 Q97WA2 Q97YM8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
212_P	238_A	3.913	1.00
20_S	118_V	3.658	1.00
84_Y	114_F	3.624	1.00
30_K	244_E	3.134	1.00
32_K	116_F	2.899	1.00
19_S	239_Y	2.836	1.00
27_L	116_F	2.835	1.00
6_V	136_A	2.762	1.00
226_P	229_L	2.715	1.00
3_R	138_E	2.676	1.00
35_V	114_F	2.673	1.00
36_V	46_L	2.555	1.00
144_N	182_R	2.425	1.00
180_L	183_Y	2.405	1.00
21_A	46_L	2.392	1.00
182_R	213_E	2.356	1.00
24_A	36_V	2.203	1.00
49_I	148_S	2.191	1.00
76_K	84_Y	2.072	1.00
216_S	219_R	2.057	1.00
7_V	23_I	2.013	1.00
184_N	213_E	2.003	1.00
26_G	243_V	1.972	1.00
20_S	36_V	1.962	1.00
29_Q	240_A	1.961	1.00
26_G	228_I	1.921	1.00
197_E	201_E	1.900	1.00
209_G	245_R	1.827	1.00
27_L	118_V	1.803	1.00
33_K	115_E	1.772	1.00
19_S	179_L	1.758	1.00
48_L	151_R	1.744	1.00
21_A	49_I	1.728	1.00
30_K	240_A	1.710	1.00
69_T	72_Q	1.709	1.00
39_F	132_A	1.691	1.00
32_K	247_L	1.655	1.00
6_V	121_S	1.653	1.00
4_I	119_C	1.605	1.00
24_A	118_V	1.594	1.00
209_G	242_T	1.586	1.00
214_D	235_A	1.581	1.00
32_K	115_E	1.530	1.00
7_V	140_I	1.518	1.00
138_E	176_E	1.518	1.00
180_L	196_M	1.504	1.00
197_E	210_V	1.478	1.00
179_L	242_T	1.434	1.00
196_M	200_L	1.431	1.00
45_N	152_D	1.426	1.00
182_R	185_P	1.422	1.00
23_I	246_L	1.408	1.00
215_Q	219_R	1.408	1.00
59_D	62_N	1.396	1.00
71_N	113_D	1.395	1.00
178_L	187_R	1.392	1.00
139_A	160_L	1.389	1.00
39_F	119_C	1.378	1.00
3_R	137_D	1.374	1.00
198_D	202_I	1.359	1.00
21_A	50_M	1.352	1.00
24_A	46_L	1.348	1.00
39_F	60_F	1.347	1.00
61_V	65_Q	1.318	1.00
8_T	156_I	1.309	1.00
23_I	243_V	1.307	1.00
145_P	180_L	1.300	1.00
28_A	83_L	1.281	1.00
7_V	20_S	1.271	1.00
77_D	80_T	1.259	1.00
30_K	247_L	1.256	1.00
177_H	208_V	1.252	1.00
217_V	235_A	1.252	1.00
35_V	117_I	1.236	1.00
219_R	223_Q	1.231	1.00
138_E	177_H	1.229	1.00
146_E	149_S	1.223	1.00
199_V	203_L	1.223	1.00
100_E	103_A	1.210	1.00
216_S	230_D	1.208	1.00
169_N	172_E	1.196	1.00
68_A	72_Q	1.189	1.00
183_Y	210_V	1.183	1.00
102_V	105_V	1.183	1.00
15_G	181_T	1.179	1.00
140_I	179_L	1.172	1.00
8_T	121_S	1.172	1.00
27_L	34_T	1.161	1.00
237_K	240_A	1.152	1.00
50_M	83_L	1.150	1.00
194_L	197_E	1.143	1.00
233_A	236_G	1.110	1.00
238_A	241_D	1.100	1.00
207_L	210_V	1.087	1.00
17_T	49_I	1.081	1.00
225_E	229_L	1.076	1.00
211_I	235_A	1.075	1.00
146_E	218_L	1.074	1.00
25_T	29_Q	1.069	1.00
116_F	247_L	1.066	1.00
73_A	76_K	1.065	1.00
22_A	25_T	1.064	1.00
90_Q	155_R	1.064	1.00
45_N	148_S	1.059	1.00
214_D	233_A	1.051	1.00
80_T	229_L	1.045	1.00
19_S	23_I	1.036	1.00
148_S	221_S	1.035	1.00
241_D	245_R	1.035	1.00
69_T	74_L	1.029	1.00
240_A	244_E	1.028	1.00
19_S	181_T	1.026	1.00
100_E	104_K	1.025	1.00
95_D	98_T	1.025	1.00
58_Y	62_N	1.024	1.00
80_T	83_L	1.022	1.00
17_T	46_L	1.017	1.00
72_Q	75_I	1.006	1.00
195_S	198_D	1.006	1.00
37_I	119_C	1.005	1.00
198_D	201_E	1.003	1.00
27_L	243_V	1.003	1.00
241_D	244_E	0.999	1.00
101_G	105_V	0.994	1.00
60_F	63_V	0.992	1.00
105_V	108_D	0.982	1.00
244_E	248_G	0.980	1.00
26_G	30_K	0.979	1.00
22_A	228_I	0.978	1.00
104_K	108_D	0.977	1.00
88_A	91_T	0.974	1.00
33_K	113_D	0.973	1.00
84_Y	87_P	0.960	1.00
41_I	128_G	0.957	1.00
28_A	82_N	0.948	1.00
4_I	117_I	0.941	1.00
37_I	117_I	0.940	1.00
26_G	240_A	0.939	1.00
121_S	132_A	0.933	1.00
214_D	234_D	0.919	1.00
63_V	66_G	0.919	1.00
61_V	64_I	0.918	1.00
143_T	196_M	0.916	1.00
70_L	86_L	0.915	1.00
5_I	246_L	0.914	1.00
7_V	19_S	0.910	1.00
242_T	246_L	0.908	1.00
228_I	240_A	0.905	1.00
43_L	47_D	0.905	1.00
18_T	221_S	0.903	1.00
8_T	129_A	0.902	1.00
174_I	177_H	0.899	1.00
154_D	202_I	0.898	1.00
178_L	181_T	0.895	1.00
103_A	107_D	0.894	1.00
194_L	198_D	0.893	1.00
235_A	238_A	0.893	1.00
141_I	153_S	0.888	1.00
195_S	200_L	0.887	1.00
211_I	238_A	0.885	1.00
25_T	228_I	0.884	1.00
18_T	217_V	0.881	1.00
5_I	116_F	0.874	1.00
7_V	118_V	0.871	1.00
158_G	161_A	0.870	1.00
234_D	237_K	0.864	1.00
44_R	47_D	0.861	1.00
68_A	71_N	0.860	1.00
29_Q	229_L	0.852	1.00
192_D	195_S	0.847	1.00
231_I	236_G	0.847	1.00
96_A	126_E	0.846	1.00
43_L	123_A	0.841	1.00
4_I	110_K	0.836	1.00
73_A	86_L	0.833	1.00
74_L	77_D	0.833	1.00
24_A	83_L	0.830	1.00
234_D	238_A	0.827	1.00
181_T	239_Y	0.823	1.00
67_D	74_L	0.819	1.00
44_R	88_A	0.811	1.00
4_I	137_D	0.806	1.00
164_S	173_P	0.805	1.00
71_N	75_I	0.805	1.00
68_A	73_A	0.802	1.00
71_N	76_K	0.802	1.00
114_F	117_I	0.798	1.00
34_T	116_F	0.796	1.00
197_E	200_L	0.789	1.00
145_P	183_Y	0.788	1.00
230_D	233_A	0.786	1.00
137_D	171_E	0.782	1.00
236_G	240_A	0.780	1.00
144_N	149_S	0.780	1.00
11_K	148_S	0.779	1.00
71_N	74_L	0.778	1.00
141_I	157_L	0.768	1.00
14_V	149_S	0.768	1.00
25_T	229_L	0.756	1.00
5_I	138_E	0.750	1.00
22_A	226_P	0.750	1.00
110_K	137_D	0.748	1.00
67_D	71_N	0.747	1.00
80_T	84_Y	0.745	1.00
212_P	234_D	0.745	1.00
94_K	98_T	0.740	1.00
39_F	128_G	0.740	1.00
121_S	129_A	0.739	1.00
26_G	29_Q	0.739	1.00
47_D	83_L	0.738	1.00
99_R	131_M	0.735	1.00
102_V	106_L	0.735	1.00
193_M	197_E	0.731	1.00
177_H	186_G	0.730	1.00
227_V	236_G	0.730	1.00
188_V	193_M	0.730	1.00
62_N	65_Q	0.728	1.00
26_G	239_Y	0.726	1.00
58_Y	68_A	0.725	1.00
19_S	142_T	0.724	1.00
63_V	73_A	0.723	1.00
20_S	46_L	0.722	1.00
92_R	96_A	0.719	1.00
87_P	90_Q	0.719	1.00
16_K	123_A	0.717	1.00
187_R	215_Q	0.714	1.00
10_G	159_I	0.714	1.00
67_D	75_I	0.711	1.00
72_Q	77_D	0.710	1.00
232_N	237_K	0.709	1.00
11_K	14_V	0.698	1.00
45_N	151_R	0.696	1.00
130_L	159_I	0.694	1.00
206_K	245_R	0.690	1.00
208_V	245_R	0.689	1.00
91_T	94_K	0.688	1.00
105_V	109_L	0.687	1.00
35_V	74_L	0.681	1.00
180_L	199_V	0.681	1.00
140_I	246_L	0.679	1.00
48_L	147_V	0.675	1.00
22_A	239_Y	0.674	1.00
228_I	236_G	0.674	1.00
142_T	181_T	0.673	1.00
9_S	14_V	0.669	1.00
29_Q	228_I	0.666	1.00
199_V	202_I	0.665	1.00
34_T	118_V	0.664	1.00
126_E	129_A	0.664	1.00
182_R	187_R	0.661	1.00
69_T	75_I	0.660	1.00
179_L	186_G	0.658	1.00
237_K	241_D	0.657	1.00
36_V	50_M	0.655	1.00
3_R	32_K	0.650	1.00
19_S	211_I	0.649	1.00
176_E	208_V	0.646	1.00
132_A	136_A	0.642	1.00
63_V	105_V	0.641	1.00
157_L	161_A	0.641	1.00
22_A	227_V	0.636	1.00
138_E	173_P	0.634	1.00
69_T	73_A	0.633	1.00
200_L	210_V	0.631	1.00
158_G	162_S	0.630	1.00
239_Y	242_T	0.624	1.00
200_L	203_L	0.621	1.00
245_R	248_G	0.619	1.00
145_P	192_D	0.618	1.00
4_I	135_F	0.617	1.00
69_T	76_K	0.616	1.00
70_L	77_D	0.613	1.00
23_I	242_T	0.611	1.00
11_K	16_K	0.608	1.00
220_A	227_V	0.603	1.00
141_I	156_I	0.600	1.00
86_L	90_Q	0.599	1.00
147_V	151_R	0.599	1.00
154_D	158_G	0.598	1.00
31_G	82_N	0.597	1.00
133_L	139_A	0.596	1.00
94_K	97_L	0.596	1.00
34_T	83_L	0.594	1.00
3_R	176_E	0.593	1.00
44_R	89_S	0.590	1.00
243_V	247_L	0.589	1.00
39_F	102_V	0.589	1.00
119_C	132_A	0.589	1.00
25_T	226_P	0.585	1.00
45_N	48_L	0.585	1.00
37_I	106_L	0.585	1.00
69_T	108_D	0.582	1.00
99_R	102_V	0.580	1.00
216_S	233_A	0.580	1.00
192_D	200_L	0.578	1.00
147_V	222_N	0.577	1.00
187_R	192_D	0.576	1.00
62_N	66_G	0.575	1.00
8_T	133_L	0.574	1.00
227_V	235_A	0.574	1.00
215_Q	218_L	0.572	1.00
107_D	110_K	0.571	1.00
211_I	242_T	0.568	1.00
34_T	115_E	0.568	1.00
17_T	45_N	0.566	1.00
118_V	246_L	0.565	1.00
155_R	158_G	0.562	1.00
77_D	81_E	0.560	1.00
161_A	164_S	0.559	1.00
4_I	106_L	0.556	1.00
217_V	221_S	0.556	1.00
98_T	128_G	0.555	1.00
220_A	226_P	0.553	1.00
61_V	98_T	0.552	1.00
25_T	28_A	0.552	1.00
21_A	36_V	0.551	1.00
220_A	225_E	0.551	1.00
195_S	203_L	0.551	1.00
26_G	236_G	0.545	1.00
150_V	154_D	0.544	1.00
181_T	187_R	0.542	1.00
183_Y	188_V	0.542	1.00
47_D	87_P	0.542	1.00
218_L	221_S	0.541	1.00
183_Y	187_R	0.539	1.00
127_T	130_L	0.538	1.00
77_D	85_I	0.537	1.00
131_M	134_Y	0.537	1.00
106_L	135_F	0.536	1.00
30_K	243_V	0.535	1.00
123_A	152_D	0.534	1.00
10_G	124_G	0.533	1.00
218_L	222_N	0.533	1.00
184_N	215_Q	0.529	1.00
28_A	34_T	0.528	1.00
201_E	204_R	0.524	1.00
100_E	134_Y	0.523	1.00
70_L	74_L	0.523	1.00
48_L	148_S	0.523	1.00
74_L	84_Y	0.522	1.00
92_R	98_T	0.520	1.00
92_R	95_D	0.519	1.00
91_T	158_G	0.513	1.00
15_G	19_S	0.510	1.00
192_D	202_I	0.509	1.00
196_M	210_V	0.509	1.00
33_K	114_F	0.507	0.99
193_M	200_L	0.507	0.99
177_H	206_K	0.507	0.99
83_L	87_P	0.505	0.99
188_V	222_N	0.500	0.99
77_D	84_Y	0.500	0.99

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4pfsA	1	0.8778	100	0.286	Contact Map
1hyqA	1	0.8519	100	0.289	Contact Map
4rz3A	2	0.8741	100	0.295	Contact Map
3q9lA	2	0.9481	100	0.301	Contact Map
4v03A	2	0.8741	100	0.309	Contact Map
3pg5A	2	0.8259	100	0.312	Contact Map
1g3qA	1	0.8704	100	0.313	Contact Map
1wcv1	2	0.8778	100	0.324	Contact Map
3ez9A	2	0.7852	100	0.331	Contact Map
3ez2A	2	0.9222	100	0.333	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0089 seconds.