GUDD - ECOLI - GREMLIN Contacts

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GUDD - Glucarate dehydratase

UniProt:	P0AES2	Sequences: MSSQFTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKATPLPYQSQPDDSCDWYRLRHEEAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSLNEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGLVQVPEKPGLGVEIDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMVR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG13167
Length:	446 (358)
Sequences:	6739 (4141)
Seq/√Len:	218.8

ECOLI - GUDD GUDX RHMD RSPA DGOD AEEP MENC
BACSU - GUDD YITF AEEP MENC
HALSA - Q9HS20 Q9HP25 Q9HQN7
SULSO - GAD Q97VG1 Q97YL9 ARAD Q97YR3 Q97UK8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
144_E	389_L	4.069	1.00
279_R	308_D	3.599	1.00
49_H	123_L	3.393	1.00
75_K	86_L	3.258	1.00
14_Q	42_I	2.755	1.00
276_A	280_R	2.749	1.00
193_E	226_R	2.679	1.00
42_I	404_M	2.646	1.00
241_S	244_E	2.639	1.00
302_L	334_L	2.612	1.00
125_G	132_V	2.581	1.00
45_D	123_L	2.511	1.00
44_K	50_T	2.442	1.00
249_G	259_A	2.421	1.00
380_K	401_E	2.407	1.00
249_G	282_T	2.358	1.00
250_K	253_K	2.355	1.00
14_Q	44_K	2.345	1.00
52_V	402_I	2.339	1.00
12_E	44_K	2.330	1.00
193_E	197_E	2.293	1.00
246_I	281_A	2.291	1.00
271_G	274_V	2.268	1.00
295_W	321_G	2.248	1.00
277_E	280_R	2.232	1.00
45_D	49_H	2.230	1.00
253_K	283_G	2.218	1.00
117_E	320_Q	2.217	1.00
317_W	325_V	2.189	1.00
185_P	189_V	2.188	1.00
49_H	127_H	2.187	1.00
273_E	304_L	2.124	1.00
9_V	46_N	2.113	1.00
42_I	50_T	2.064	1.00
146_E	202_N	2.052	1.00
299_G	303_S	2.041	1.00
13_M	43_I	1.996	1.00
189_V	226_R	1.969	1.00
126_Q	401_E	1.954	1.00
196_Y	230_A	1.933	1.00
79_E	82_N	1.874	1.00
242_L	278_F	1.871	1.00
184_T	187_A	1.853	1.00
277_E	281_A	1.848	1.00
303_S	332_F	1.846	1.00
221_V	225_Q	1.846	1.00
248_I	252_L	1.842	1.00
263_C	278_F	1.823	1.00
276_A	304_L	1.797	1.00
386_K	391_Q	1.795	1.00
140_Q	143_S	1.779	1.00
217_A	251_Y	1.760	1.00
16_I	42_I	1.755	1.00
144_E	391_Q	1.745	1.00
251_Y	254_G	1.725	1.00
253_K	284_L	1.714	1.00
300_H	304_L	1.685	1.00
75_K	82_N	1.671	1.00
222_A	225_Q	1.666	1.00
298_M	325_V	1.653	1.00
132_V	398_L	1.642	1.00
130_V	134_S	1.640	1.00
19_A	35_F	1.637	1.00
43_I	120_M	1.636	1.00
11_T	46_N	1.615	1.00
227_F	232_I	1.588	1.00
301_T	307_V	1.583	1.00
11_T	44_K	1.573	1.00
49_H	126_Q	1.563	1.00
187_A	190_R	1.546	1.00
242_L	277_E	1.536	1.00
221_V	254_G	1.528	1.00
356_A	392_V	1.519	1.00
204_F	230_A	1.511	1.00
45_D	127_H	1.509	1.00
302_L	328_M	1.506	1.00
324_R	330_H	1.493	1.00
16_I	411_H	1.484	1.00
75_K	83_V	1.475	1.00
322_S	354_V	1.475	1.00
190_R	193_E	1.474	1.00
380_K	403_D	1.470	1.00
78_G	127_H	1.467	1.00
83_V	87_V	1.466	1.00
124_L	128_L	1.461	1.00
327_Q	330_H	1.447	1.00
212_A	215_E	1.434	1.00
125_G	135_L	1.424	1.00
321_G	324_R	1.422	1.00
246_I	278_F	1.422	1.00
55_I	115_G	1.412	1.00
13_M	69_I	1.411	1.00
81_K	324_R	1.408	1.00
207_K	237_N	1.403	1.00
218_E	221_V	1.403	1.00
117_E	121_L	1.388	1.00
298_M	310_P	1.384	1.00
404_M	408_M	1.367	1.00
76_T	79_E	1.358	1.00
381_E	395_K	1.355	1.00
41_V	115_G	1.354	1.00
132_V	319_M	1.354	1.00
323_V	327_Q	1.346	1.00
192_A	227_F	1.334	1.00
206_L	223_L	1.327	1.00
40_I	407_V	1.326	1.00
406_Q	409_K	1.323	1.00
47_S	127_H	1.316	1.00
220_I	234_L	1.301	1.00
263_C	274_V	1.300	1.00
40_I	346_I	1.300	1.00
300_H	303_S	1.296	1.00
78_G	124_L	1.293	1.00
287_A	311_L	1.287	1.00
12_E	69_I	1.278	1.00
231_R	257_A	1.272	1.00
27_N	32_H	1.271	1.00
192_A	204_F	1.267	1.00
196_Y	204_F	1.266	1.00
233_T	257_A	1.263	1.00
87_V	113_V	1.262	1.00
186_D	190_R	1.258	1.00
75_K	79_E	1.256	1.00
194_A	199_Y	1.255	1.00
288_T	301_T	1.250	1.00
81_K	323_V	1.242	1.00
402_I	407_V	1.237	1.00
253_K	282_T	1.237	1.00
83_V	86_L	1.233	1.00
234_L	256_L	1.228	1.00
293_T	297_Q	1.222	1.00
273_E	300_H	1.222	1.00
146_E	389_L	1.220	1.00
193_E	196_Y	1.217	1.00
46_N	77_L	1.215	1.00
131_N	134_S	1.211	1.00
406_Q	410_A	1.210	1.00
313_D	339_H	1.197	1.00
250_K	281_A	1.194	1.00
218_E	222_A	1.190	1.00
224_A	232_I	1.185	1.00
63_K	66_E	1.180	1.00
302_L	332_F	1.176	1.00
250_K	283_G	1.168	1.00
13_M	72_V	1.167	1.00
227_F	230_A	1.160	1.00
121_L	320_Q	1.160	1.00
69_I	73_V	1.152	1.00
350_M	398_L	1.149	1.00
256_L	284_L	1.146	1.00
215_E	218_E	1.142	1.00
224_A	229_Q	1.135	1.00
189_V	227_F	1.135	1.00
43_I	72_V	1.125	1.00
247_K	251_Y	1.122	1.00
326_A	358_A	1.120	1.00
82_N	86_L	1.113	1.00
223_L	227_F	1.112	1.00
312_A	322_S	1.108	1.00
217_A	221_V	1.107	1.00
403_D	406_Q	1.104	1.00
144_E	387_G	1.101	1.00
307_V	310_P	1.097	1.00
261_D	311_L	1.097	1.00
78_G	128_L	1.093	1.00
130_V	135_L	1.088	1.00
134_S	394_E	1.082	1.00
279_R	305_Q	1.079	1.00
118_A	350_M	1.077	1.00
275_M	288_T	1.077	1.00
42_I	52_V	1.075	1.00
330_H	359_P	1.069	1.00
208_G	236_P	1.065	1.00
190_R	194_A	1.061	1.00
194_A	197_E	1.051	1.00
278_F	286_T	1.036	1.00
317_W	322_S	1.034	1.00
126_Q	395_K	1.032	1.00
314_P	322_S	1.030	1.00
189_V	193_E	1.029	1.00
206_L	220_I	1.026	1.00
352_T	392_V	1.025	1.00
80_Y	124_L	1.021	1.00
192_A	223_L	1.021	1.00
68_A	116_I	1.021	1.00
203_D	233_T	1.019	1.00
272_R	301_T	1.018	1.00
294_D	297_Q	1.017	1.00
68_A	87_V	1.016	1.00
128_L	135_L	1.010	1.00
302_L	310_P	1.006	1.00
222_A	226_R	1.003	1.00
213_G	248_I	1.002	1.00
405_D	408_M	1.000	1.00
236_P	259_A	0.998	1.00
204_F	227_F	0.993	1.00
323_V	357_A	0.992	1.00
185_P	222_A	0.988	1.00
287_A	309_I	0.983	1.00
220_I	252_L	0.982	1.00
195_A	199_Y	0.982	1.00
217_A	254_G	0.982	1.00
129_G	396_P	0.980	1.00
189_V	225_Q	0.972	1.00
133_A	392_V	0.971	1.00
65_L	70_P	0.969	1.00
40_I	52_V	0.956	1.00
299_G	332_F	0.953	1.00
240_W	248_I	0.953	1.00
149_G	201_F	0.950	1.00
228_P	255_S	0.947	1.00
214_E	251_Y	0.947	1.00
295_W	328_M	0.933	1.00
292_A	298_M	0.933	1.00
324_R	327_Q	0.932	1.00
297_Q	300_H	0.926	0.99
242_L	263_C	0.925	0.99
136_L	319_M	0.924	0.99
65_L	69_I	0.923	0.99
246_I	282_T	0.922	0.99
263_C	275_M	0.921	0.99
15_V	62_R	0.920	0.99
189_V	222_A	0.913	0.99
349_A	400_V	0.912	0.99
39_N	62_R	0.904	0.99
282_T	286_T	0.900	0.99
185_P	218_E	0.898	0.99
242_L	274_V	0.896	0.99
277_E	305_Q	0.891	0.99
76_T	134_S	0.890	0.99
240_W	259_A	0.888	0.99
144_E	386_K	0.884	0.99
319_M	354_V	0.882	0.99
120_M	124_L	0.882	0.99
246_I	277_E	0.881	0.99
44_K	47_S	0.879	0.99
77_L	120_M	0.878	0.99
193_E	227_F	0.876	0.99
408_M	411_H	0.876	0.99
65_L	116_I	0.875	0.99
272_R	306_S	0.874	0.99
233_T	258_Y	0.864	0.99
346_I	400_V	0.862	0.99
209_G	216_E	0.861	0.99
328_M	332_F	0.860	0.99
124_L	135_L	0.858	0.99
404_M	407_V	0.858	0.99
299_G	328_M	0.853	0.99
79_E	134_S	0.851	0.99
385_I	390_V	0.849	0.99
356_A	393_P	0.849	0.99
83_V	120_M	0.847	0.99
190_R	226_R	0.847	0.99
71_L	86_L	0.847	0.99
214_E	218_E	0.846	0.99
72_V	116_I	0.840	0.99
84_L	320_Q	0.839	0.99
319_M	323_V	0.838	0.99
381_E	401_E	0.838	0.99
279_R	286_T	0.838	0.99
15_V	65_L	0.835	0.99
189_V	192_A	0.834	0.99
224_A	228_P	0.832	0.99
310_P	329_C	0.830	0.99
189_V	223_L	0.829	0.99
386_K	389_L	0.826	0.99
133_A	394_E	0.825	0.99
192_A	226_R	0.823	0.99
395_K	401_E	0.822	0.99
149_G	195_A	0.822	0.99
289_N	313_D	0.821	0.99
196_Y	226_R	0.819	0.99
16_I	408_M	0.815	0.99
140_Q	394_E	0.813	0.99
376_Q	406_Q	0.813	0.99
203_D	231_R	0.810	0.99
246_I	250_K	0.809	0.99
125_G	128_L	0.809	0.99
236_P	240_W	0.807	0.99
10_V	43_I	0.805	0.99
84_L	117_E	0.804	0.99
72_V	83_V	0.803	0.99
50_T	401_E	0.799	0.98
19_A	37_T	0.797	0.98
67_D	70_P	0.795	0.98
44_K	52_V	0.795	0.98
88_R	321_G	0.794	0.98
280_R	305_Q	0.791	0.98
123_L	127_H	0.791	0.98
87_V	116_I	0.788	0.98
314_P	351_F	0.787	0.98
261_D	289_N	0.786	0.98
122_D	126_Q	0.786	0.98
64_T	112_V	0.786	0.98
196_Y	227_F	0.785	0.98
243_N	247_K	0.780	0.98
367_T	370_I	0.780	0.98
84_L	87_V	0.773	0.98
272_R	300_H	0.769	0.98
314_P	354_V	0.769	0.98
292_A	297_Q	0.767	0.98
262_P	286_T	0.767	0.98
202_N	229_Q	0.766	0.98
9_V	76_T	0.764	0.98
125_G	130_V	0.763	0.98
311_L	339_H	0.763	0.98
17_P	37_T	0.762	0.98
288_T	307_V	0.759	0.98
292_A	301_T	0.758	0.98
125_G	396_P	0.757	0.98
391_Q	394_E	0.755	0.98
66_E	69_I	0.754	0.98
11_T	45_D	0.754	0.98
330_H	360_G	0.754	0.98
143_S	394_E	0.753	0.98
305_Q	334_L	0.753	0.98
202_N	387_G	0.749	0.98
188_V	219_S	0.747	0.98
134_S	140_Q	0.745	0.98
312_A	336_W	0.743	0.98
349_A	352_T	0.743	0.98
242_L	246_I	0.741	0.98
62_R	65_L	0.740	0.97
124_L	127_H	0.739	0.97
77_L	123_L	0.736	0.97
276_A	306_S	0.733	0.97
216_E	240_W	0.732	0.97
224_A	255_S	0.728	0.97
214_E	247_K	0.720	0.97
192_A	222_A	0.719	0.97
50_T	126_Q	0.719	0.97
147_M	390_V	0.719	0.97
234_L	252_L	0.719	0.97
63_K	67_D	0.715	0.97
319_M	350_M	0.714	0.97
88_R	113_V	0.713	0.97
69_I	116_I	0.712	0.97
68_A	91_F	0.711	0.97
53_G	115_G	0.706	0.97
84_L	88_R	0.702	0.97
352_T	390_V	0.700	0.96
47_S	77_L	0.696	0.96
383_F	390_V	0.695	0.96
154_V	187_A	0.695	0.96
384_E	391_Q	0.692	0.96
225_Q	228_P	0.690	0.96
62_R	66_E	0.682	0.96
46_N	49_H	0.680	0.96
208_G	234_L	0.672	0.96
323_V	358_A	0.671	0.96
366_D	370_I	0.671	0.96
133_A	353_H	0.670	0.95
80_Y	87_V	0.669	0.95
191_L	194_A	0.669	0.95
146_E	231_R	0.669	0.95
133_A	140_Q	0.664	0.95
251_Y	255_S	0.661	0.95
55_I	111_H	0.660	0.95
275_M	286_T	0.659	0.95
273_E	303_S	0.658	0.95
272_R	304_L	0.655	0.95
121_L	132_V	0.655	0.95
368_H	372_Q	0.651	0.95
345_D	379_T	0.649	0.95
17_P	62_R	0.648	0.95
77_L	80_Y	0.647	0.95
213_G	217_A	0.647	0.95
66_E	70_P	0.643	0.94
257_A	285_P	0.642	0.94
366_D	369_W	0.642	0.94
214_E	228_P	0.641	0.94
249_G	284_L	0.639	0.94
370_I	373_E	0.638	0.94
128_L	131_N	0.637	0.94
11_T	47_S	0.637	0.94
196_Y	229_Q	0.636	0.94
214_E	221_V	0.635	0.94
256_L	259_A	0.634	0.94
244_E	247_K	0.631	0.94
247_K	250_K	0.629	0.94
83_V	116_I	0.628	0.94
405_D	409_K	0.626	0.94
238_G	265_A	0.626	0.94
273_E	276_A	0.625	0.94
52_V	346_I	0.624	0.93
52_V	404_M	0.621	0.93
340_S	348_L	0.620	0.93
298_M	312_A	0.619	0.93
150_Y	207_K	0.618	0.93
224_A	230_A	0.618	0.93
223_L	226_R	0.616	0.93
276_A	305_Q	0.615	0.93
132_V	323_V	0.614	0.93
77_L	127_H	0.613	0.93
215_E	219_S	0.612	0.93
118_A	346_I	0.612	0.93
369_W	372_Q	0.612	0.93
72_V	120_M	0.612	0.93
335_T	362_I	0.610	0.93
131_N	353_H	0.609	0.93
126_Q	398_L	0.608	0.93
318_T	321_G	0.608	0.93
80_Y	83_V	0.607	0.93
68_A	113_V	0.605	0.92
311_L	338_S	0.605	0.92
186_D	189_V	0.604	0.92
217_A	252_L	0.603	0.92
118_A	315_H	0.602	0.92
253_K	256_L	0.602	0.92
346_I	402_I	0.602	0.92
65_L	112_V	0.599	0.92
352_T	393_P	0.599	0.92
247_K	255_S	0.599	0.92
186_D	222_A	0.597	0.92
326_A	360_G	0.595	0.92
56_P	315_H	0.592	0.92
289_N	311_L	0.592	0.92
258_Y	337_G	0.591	0.92
151_L	195_A	0.591	0.92
245_A	263_C	0.590	0.91
28_L	33_A	0.590	0.91
217_A	220_I	0.589	0.91
296_R	300_H	0.589	0.91
24_M	191_L	0.588	0.91
275_M	278_F	0.587	0.91
121_L	125_G	0.586	0.91
16_I	52_V	0.585	0.91
93_D	109_T	0.583	0.91
310_P	334_L	0.581	0.91
302_L	329_C	0.581	0.91
57_G	111_H	0.580	0.91
271_G	333_G	0.580	0.91
202_N	389_L	0.579	0.91
381_E	384_E	0.577	0.91
61_I	65_L	0.577	0.91
261_D	290_M	0.576	0.90
131_N	135_L	0.576	0.90
64_T	108_T	0.575	0.90
278_F	281_A	0.575	0.90
298_M	329_C	0.572	0.90
349_A	398_L	0.570	0.90
132_V	136_L	0.570	0.90
365_I	368_H	0.569	0.90
12_E	46_N	0.568	0.90
245_A	249_G	0.568	0.90
13_M	116_I	0.567	0.90
28_L	31_A	0.567	0.90
322_S	338_S	0.567	0.90
289_N	339_H	0.566	0.90
78_G	82_N	0.564	0.90
71_L	90_T	0.563	0.89
124_L	134_S	0.560	0.89
202_N	388_G	0.560	0.89
85_T	141_Q	0.560	0.89
311_L	337_G	0.559	0.89
214_E	229_Q	0.559	0.89
41_V	116_I	0.559	0.89
85_T	89_N	0.559	0.89
329_C	334_L	0.558	0.89
279_R	306_S	0.558	0.89
261_D	291_I	0.557	0.89
245_A	259_A	0.555	0.89
46_N	127_H	0.554	0.89
292_A	310_P	0.553	0.89
25_L	33_A	0.553	0.89
295_W	299_G	0.552	0.89
208_G	240_W	0.550	0.88
328_M	331_E	0.550	0.88
191_L	195_A	0.550	0.88
379_T	382_P	0.549	0.88
266_E	296_R	0.548	0.88
118_A	132_V	0.548	0.88
153_F	219_S	0.547	0.88
15_V	39_N	0.546	0.88
118_A	398_L	0.546	0.88
329_C	336_W	0.545	0.88
25_L	32_H	0.545	0.88
39_N	55_I	0.543	0.88
22_D	36_F	0.542	0.88
315_H	341_N	0.541	0.88
39_N	61_I	0.539	0.87
148_L	311_L	0.537	0.87
123_L	126_Q	0.537	0.87
51_G	119_A	0.536	0.87
52_V	126_Q	0.535	0.87
71_L	75_K	0.534	0.87
376_Q	380_K	0.534	0.87
213_G	244_E	0.532	0.87
241_S	335_T	0.531	0.87
121_L	319_M	0.530	0.86
349_A	353_H	0.528	0.86
289_N	338_S	0.527	0.86
114_T	118_A	0.527	0.86
131_N	395_K	0.527	0.86
347_S	351_F	0.527	0.86
295_W	324_R	0.527	0.86
336_W	358_A	0.526	0.86
58_G	341_N	0.526	0.86
125_G	398_L	0.525	0.86
220_I	256_L	0.524	0.86
250_K	254_G	0.524	0.86
207_K	235_D	0.523	0.86
148_L	339_H	0.522	0.86
263_C	288_T	0.521	0.86
148_L	233_T	0.521	0.86
111_H	316_F	0.519	0.85
54_E	344_F	0.519	0.85
275_M	307_V	0.519	0.85
296_R	299_G	0.516	0.85
327_Q	331_E	0.516	0.85
20_G	344_F	0.516	0.85
242_L	273_E	0.515	0.85
64_T	91_F	0.515	0.85
355_A	361_K	0.515	0.85
285_P	309_I	0.514	0.85
353_H	398_L	0.514	0.85
320_Q	323_V	0.514	0.85
131_N	392_V	0.513	0.85
206_L	219_S	0.512	0.85
43_I	123_L	0.512	0.85
57_G	316_F	0.511	0.84
357_A	360_G	0.511	0.84
259_A	282_T	0.510	0.84
78_G	130_V	0.510	0.84
217_A	248_I	0.510	0.84
10_V	13_M	0.509	0.84
85_T	359_P	0.507	0.84
85_T	324_R	0.506	0.84
254_G	283_G	0.505	0.84
80_Y	120_M	0.505	0.84
21_H	410_A	0.504	0.84
258_Y	289_N	0.504	0.84
258_Y	339_H	0.501	0.83
149_G	152_F	0.501	0.83
259_A	284_L	0.501	0.83
154_V	191_L	0.500	0.83
221_V	251_Y	0.500	0.83

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3mznA	2	0.9776	100	0.243	Contact Map
3p0wA	2	0.9372	100	0.249	Contact Map
3pfrA	2	0.9372	100	0.251	Contact Map
4hyrA	4	0.9596	100	0.257	Contact Map
4g8tA	3	0.9798	100	0.269	Contact Map
3vdgA	2	0.9327	100	0.296	Contact Map
3vc5A	2	0.917	100	0.302	Contact Map
4it1A	3	0.9395	100	0.308	Contact Map
3va8A	2	0.9283	100	0.31	Contact Map
3s5sA	2	0.7937	100	0.329	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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