GREMLIN Database
DCUS - Sensor histidine kinase DcuS
UniProt: P0AEC8 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG12465
Length: 543 (506)
Sequences: 10236 (8898)
Seq/√Len: 395.6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
523_E526_I4.4161.00
474_N529_Q4.2101.00
362_L374_I4.1541.00
485_I520_V3.7951.00
508_K512_E3.7711.00
233_E322_R3.5391.00
519_A531_F3.4011.00
450_L476_D3.3821.00
418_N461_T3.3741.00
416_I457_E3.2741.00
221_F225_Q3.2521.00
438_T510_Q3.0841.00
468_W533_Q3.0511.00
239_D243_E3.0501.00
511_V532_V3.0331.00
507_V518_I3.0231.00
220_L223_Q2.9081.00
481_A484_K2.8961.00
471_C532_V2.8941.00
459_S474_N2.8531.00
430_D514_L2.7971.00
461_T472_E2.7741.00
520_V530_F2.7381.00
250_A253_E2.7011.00
475_D479_G2.6721.00
510_Q514_L2.6651.00
480_I484_K2.6501.00
418_N459_S2.6061.00
472_E529_Q2.5871.00
416_I459_S2.5751.00
293_E296_I2.4841.00
472_E531_F2.4361.00
450_L456_G2.4311.00
470_H533_Q2.4271.00
522_S528_T2.4031.00
457_E476_D2.4021.00
463_H470_H2.3771.00
461_T474_N2.3631.00
365_K369_Q2.3521.00
438_T511_V2.3441.00
511_V516_G2.2491.00
485_I522_S2.2221.00
215_Y218_S2.1911.00
464_Y536_W2.1911.00
521_E529_Q2.1791.00
218_S221_F2.1731.00
449_A494_S2.1721.00
264_E268_T2.1671.00
102_D106_L2.1541.00
414_T457_E2.1531.00
489_F518_I2.1501.00
439_L471_C2.1391.00
234_G321_F2.1301.00
438_T507_V2.1251.00
292_E295_T2.1021.00
450_L458_I2.0851.00
522_S526_I2.0801.00
456_G476_D2.0801.00
220_L225_Q2.0611.00
359_L378_A2.0431.00
327_V331_M2.0381.00
236_V251_A2.0271.00
231_I235_V2.0261.00
470_H531_F2.0201.00
404_K440_G1.9211.00
487_H490_D1.9071.00
234_G254_L1.8991.00
399_G436_I1.8951.00
512_E517_S1.8901.00
198_T202_V1.8811.00
517_S533_Q1.8781.00
431_Q434_T1.8741.00
394_S462_L1.8691.00
361_L370_L1.8631.00
480_I488_I1.8571.00
405_I409_T1.8051.00
216_E220_L1.7921.00
430_D435_L1.7881.00
236_V319_S1.7751.00
463_H472_E1.7651.00
482_P485_I1.7521.00
434_T437_T1.7491.00
434_T510_Q1.7301.00
220_L224_R1.7271.00
328_R331_M1.7251.00
359_L379_N1.7231.00
419_S462_L1.7171.00
329_K333_R1.7141.00
516_G534_I1.6941.00
521_E531_F1.6931.00
265_K268_T1.6851.00
225_Q229_Q1.6731.00
522_S525_G1.6671.00
439_L443_I1.6601.00
448_E496_K1.6451.00
281_E285_D1.6331.00
224_R228_L1.6251.00
249_D253_E1.6211.00
87_E90_R1.6141.00
217_I220_L1.6051.00
205_L208_I1.5911.00
494_S497_G1.5911.00
446_A458_I1.5631.00
236_V244_V1.5431.00
444_E448_E1.5391.00
329_K332_Q1.5361.00
484_K493_V1.5121.00
383_E433_A1.4991.00
438_T532_V1.4781.00
221_F224_R1.4741.00
519_A533_Q1.4611.00
331_M335_D1.4601.00
511_V518_I1.4571.00
484_K487_H1.4461.00
489_F520_V1.4431.00
326_E329_K1.4241.00
469_L536_W1.4211.00
439_L473_V1.4021.00
408_A447_L1.4001.00
307_P316_G1.4001.00
234_G248_N1.3991.00
237_A316_G1.3951.00
161_G168_E1.3921.00
38_L42_S1.3831.00
357_V361_L1.3721.00
251_A255_L1.3711.00
481_A524_P1.3691.00
424_P464_Y1.3641.00
151_P161_G1.3601.00
362_L375_L1.3421.00
488_I520_V1.3401.00
442_L532_V1.3391.00
382_Q386_G1.3351.00
358_I374_I1.3311.00
397_I462_L1.3301.00
252_Q259_K1.3261.00
488_I530_F1.3161.00
399_G432_V1.3141.00
247_I252_Q1.3131.00
394_S398_A1.3091.00
437_T510_Q1.3081.00
125_I129_L1.3051.00
360_G364_L1.3041.00
64_A68_E1.3011.00
257_Y261_Q1.2961.00
375_L379_N1.2831.00
119_P122_G1.2781.00
52_L56_A1.2771.00
480_I528_T1.2711.00
345_R350_E1.2651.00
56_A60_A1.2641.00
224_R227_M1.2621.00
490_D493_V1.2561.00
372_D376_K1.2541.00
249_D252_Q1.2491.00
218_S223_Q1.2451.00
336_G339_N1.2401.00
357_V377_T1.2361.00
362_L371_E1.2351.00
459_S476_D1.2301.00
252_Q258_R1.2301.00
408_A415_L1.2261.00
78_Q81_G1.2231.00
97_F166_G1.2221.00
465_R470_H1.2171.00
350_E353_N1.2151.00
468_W517_S1.2151.00
348_S353_N1.2111.00
310_S313_V1.2071.00
520_V528_T1.2061.00
482_P523_E1.1991.00
60_A64_A1.1961.00
400_F443_I1.1941.00
451_G455_G1.1831.00
435_L514_L1.1781.00
203_K207_K1.1741.00
334_L337_L1.1721.00
291_D296_I1.1701.00
519_A532_V1.1631.00
487_H493_V1.1611.00
158_K161_G1.1611.00
49_R53_A1.1601.00
489_F530_F1.1601.00
403_S440_G1.1541.00
480_I520_V1.1531.00
351_F354_K1.1531.00
423_L462_L1.1461.00
400_F436_I1.1431.00
480_I485_I1.1251.00
484_K495_T1.1241.00
353_N449_A1.1221.00
442_L507_V1.1161.00
290_R293_E1.1131.00
335_D338_V1.1111.00
395_P432_V1.1101.00
277_V281_E1.1031.00
218_S222_E1.1011.00
408_A458_I1.0901.00
340_Y344_L1.0801.00
396_V400_F1.0801.00
82_I86_A1.0801.00
280_S284_R1.0781.00
420_E463_H1.0761.00
338_V342_D1.0731.00
361_L373_Y1.0681.00
258_R261_Q1.0621.00
442_L530_F1.0551.00
399_G403_S1.0531.00
304_N307_P1.0451.00
394_S419_S1.0421.00
327_V334_L1.0401.00
247_I251_A1.0381.00
238_V319_S1.0381.00
324_K328_R1.0331.00
161_G165_I1.0321.00
289_R292_E1.0321.00
434_T513_N1.0311.00
338_V341_A1.0301.00
511_V534_I1.0261.00
56_A59_V1.0241.00
353_N360_G1.0211.00
350_E354_K1.0201.00
118_Q122_G1.0181.00
228_L246_L1.0171.00
208_I212_L1.0141.00
97_F110_H1.0131.00
127_K132_E1.0121.00
480_I522_S1.0111.00
328_R332_Q1.0091.00
448_E494_S1.0081.00
347_R388_L1.0081.00
278_D281_E1.0051.00
202_V206_K1.0031.00
361_L374_I1.0011.00
395_P399_G0.9981.00
309_R314_I0.9971.00
299_R302_L0.9961.00
351_F381_Y0.9961.00
442_L473_V0.9951.00
443_I460_V0.9941.00
438_T514_L0.9921.00
401_L417_L0.9921.00
374_I378_A0.9871.00
124_D127_K0.9851.00
407_R410_D0.9811.00
238_V244_V0.9801.00
404_K447_L0.9781.00
330_L334_L0.9771.00
216_E221_F0.9771.00
59_V62_T0.9761.00
373_Y377_T0.9741.00
234_G251_A0.9711.00
362_L378_A0.9701.00
398_A402_I0.9681.00
237_A318_I0.9651.00
462_L471_C0.9631.00
420_E423_L0.9611.00
77_P81_G0.9601.00
42_S46_D0.9581.00
223_Q227_M0.9571.00
398_A417_L0.9561.00
352_M381_Y0.9551.00
413_H450_L0.9551.00
357_V373_Y0.9551.00
401_L405_I0.9541.00
502_V506_L0.9541.00
112_E115_R0.9541.00
228_L248_N0.9531.00
480_I504_L0.9531.00
51_G54_N0.9511.00
494_S500_R0.9511.00
467_G536_W0.9511.00
435_L532_V0.9491.00
149_F162_V0.9471.00
393_K494_S0.9451.00
397_I460_V0.9421.00
451_G454_P0.9421.00
436_I440_G0.9401.00
349_H441_N0.9401.00
123_D127_K0.9351.00
215_Y223_Q0.9341.00
228_L235_V0.9321.00
55_K58_A0.9291.00
418_N463_H0.9281.00
480_I486_D0.9221.00
307_P314_I0.9221.00
449_A496_K0.9181.00
138_N141_F0.9181.00
295_T299_R0.9171.00
60_A63_L0.9151.00
215_Y220_L0.9081.00
412_G454_P0.9071.00
350_E506_L0.9051.00
291_D294_I0.9051.00
67_P70_R0.9051.00
126_L130_N0.9011.00
37_H41_F0.9001.00
196_I200_I0.8981.00
359_L362_L0.8951.00
468_W535_P0.8931.00
450_L455_G0.8931.00
333_R336_G0.8921.00
354_K381_Y0.8911.00
153_Y159_Q0.8881.00
50_D53_A0.8861.00
350_E437_T0.8851.00
237_A246_L0.8831.00
352_M389_L0.8831.00
101_T107_R0.8831.00
343_A348_S0.8791.00
404_K443_I0.8791.00
346_E491_K0.8771.00
141_F145_A0.8771.00
124_D128_A0.8741.00
390_G434_T0.8711.00
177_N180_R0.8701.00
84_A87_E0.8691.00
42_S45_S0.8641.00
99_V107_R0.8631.00
215_Y221_F0.8631.00
344_L353_N0.8611.00
204_V208_I0.8601.00
342_D346_E0.8591.00
235_V320_T0.8571.00
177_N181_W0.8561.00
330_L333_R0.8561.00
363_H375_L0.8531.00
271_H274_S0.8511.00
254_L301_L0.8491.00
245_T316_G0.8491.00
377_T380_N0.8471.00
248_N251_A0.8451.00
352_M382_Q0.8441.00
332_Q335_D0.8441.00
370_L373_Y0.8421.00
302_L322_R0.8391.00
36_V40_Y0.8391.00
509_Q512_E0.8391.00
516_G535_P0.8371.00
491_K509_Q0.8351.00
460_V473_V0.8351.00
154_D158_K0.8301.00
143_A147_R0.8301.00
57_L61_R0.8271.00
358_I378_A0.8261.00
443_I458_I0.8261.00
437_T440_G0.8261.00
236_V248_N0.8221.00
237_A248_N0.8201.00
359_L382_Q0.8201.00
351_F355_L0.8201.00
439_L532_V0.8191.00
388_L392_I0.8191.00
448_E495_T0.8151.00
432_V436_I0.8131.00
343_A347_R0.8121.00
66_S69_I0.8121.00
403_S407_R0.8091.00
351_F385_I0.8091.00
48_T51_G0.8061.00
194_G198_T0.8061.00
83_Q87_E0.8041.00
404_K407_R0.7991.00
354_K492_G0.7991.00
125_I128_A0.7981.00
81_G84_A0.7971.00
482_P486_D0.7941.00
216_E223_Q0.7921.00
238_V242_G0.7901.00
353_N357_V0.7891.00
399_G402_I0.7881.00
180_R184_I0.7881.00
26_S29_L0.7841.00
243_E265_K0.7821.00
148_V151_P0.7801.00
310_S314_I0.7801.00
350_E384_E0.7761.00
356_H359_L0.7751.00
353_N364_L0.7741.00
168_E171_R0.7741.00
34_L38_L0.7721.00
342_D491_K0.7701.00
255_L301_L0.7691.00
422_Q464_Y0.7691.00
40_Y44_I0.7671.00
387_S500_R0.7661.00
182_S185_W0.7641.00
409_T412_G0.7631.00
437_T506_L0.7621.00
344_L356_H0.7611.00
353_N389_L0.7611.00
41_F45_S0.7591.00
352_M386_G0.7581.00
237_A251_A0.7581.00
153_Y161_G0.7571.00
161_G169_L0.7551.00
85_I88_A0.7541.00
221_F227_M0.7501.00
348_S352_M0.7491.00
299_R323_D0.7481.00
340_Y346_E0.7481.00
237_A245_T0.7471.00
383_E387_S0.7451.00
397_I439_L0.7451.00
48_T52_L0.7431.00
364_L370_L0.7421.00
344_L347_R0.7421.00
99_V110_H0.7411.00
336_G340_Y0.7411.00
446_A473_V0.7411.00
481_A488_I0.7401.00
347_R351_F0.7371.00
218_S224_R0.7361.00
475_D527_F0.7361.00
223_Q228_L0.7361.00
343_A353_N0.7341.00
389_L500_R0.7331.00
325_T329_K0.7331.00
192_L196_I0.7291.00
478_P528_T0.7291.00
51_G55_K0.7291.00
532_V535_P0.7281.00
145_A148_V0.7281.00
292_E296_I0.7261.00
231_I234_G0.7261.00
219_T223_Q0.7261.00
289_R294_I0.7251.00
343_A389_L0.7221.00
348_S449_A0.7211.00
465_R468_W0.7171.00
389_L393_K0.7171.00
239_D245_T0.7171.00
45_S49_R0.7141.00
377_T389_L0.7101.00
305_T308_V0.7101.00
434_T514_L0.7091.00
478_P497_G0.7071.00
88_A92_R0.7061.00
387_S434_T0.7051.00
305_T317_A0.7041.00
237_A319_S0.7011.00
283_L286_G0.7011.00
142_L145_A0.7011.00
229_Q249_D0.7001.00
123_D126_L0.7001.00
383_E386_G0.7001.00
302_L327_V0.6991.00
407_R444_E0.6991.00
151_P162_V0.6991.00
52_L55_K0.6981.00
257_Y296_I0.6981.00
335_D339_N0.6961.00
86_A90_R0.6951.00
494_S498_S0.6951.00
59_V63_L0.6911.00
355_L361_L0.6880.99
218_S225_Q0.6880.99
59_V64_A0.6870.99
345_R353_N0.6860.99
53_A57_L0.6860.99
449_A478_P0.6850.99
486_D490_D0.6850.99
345_R384_E0.6850.99
349_H353_N0.6840.99
233_E250_A0.6830.99
407_R411_L0.6830.99
149_F164_A0.6830.99
400_F404_K0.6830.99
58_A62_T0.6820.99
441_N449_A0.6820.99
251_A254_L0.6820.99
351_F361_L0.6800.99
85_I89_V0.6800.99
355_L385_I0.6800.99
97_F111_P0.6790.99
397_I400_F0.6790.99
398_A401_L0.6780.99
359_L363_H0.6770.99
236_V321_F0.6760.99
361_L377_T0.6750.99
413_H447_L0.6750.99
411_L447_L0.6740.99
163_V168_E0.6730.99
278_D282_V0.6730.99
99_V105_S0.6720.99
279_V283_L0.6710.99
353_N448_E0.6710.99
127_K131_G0.6700.99
281_E286_G0.6700.99
151_P160_I0.6700.99
194_G197_G0.6690.99
386_G390_G0.6690.99
445_N503_G0.6690.99
396_V430_D0.6680.99
327_V330_L0.6670.99
63_L66_S0.6660.99
376_K399_G0.6660.99
489_F508_K0.6660.99
282_V317_A0.6630.99
181_W185_W0.6630.99
251_A321_F0.6620.99
207_K210_F0.6610.99
350_E441_N0.6610.99
492_G502_V0.6600.99
227_M232_K0.6600.99
188_L192_L0.6580.99
310_S315_I0.6560.99
102_D108_Y0.6550.99
449_A495_T0.6540.99
341_A345_R0.6540.99
507_V511_V0.6540.99
345_R348_S0.6540.99
353_N356_H0.6530.99
250_A254_L0.6530.99
143_A168_E0.6520.99
391_K491_K0.6520.99
261_Q296_I0.6520.99
63_L67_P0.6510.99
305_T319_S0.6500.99
450_L494_S0.6490.99
504_L530_F0.6480.99
138_N149_F0.6480.99
285_D288_P0.6460.99
223_Q237_A0.6460.99
55_K59_V0.6460.99
54_N57_L0.6460.99
407_R447_L0.6450.99
223_Q246_L0.6450.99
331_M334_L0.6430.99
345_R502_V0.6430.99
389_L448_E0.6400.99
61_R64_A0.6380.99
388_L393_K0.6370.99
147_R150_T0.6360.99
245_T248_N0.6330.99
360_G378_A0.6320.99
480_I530_F0.6270.99
239_D263_D0.6270.99
370_L392_I0.6260.99
141_F147_R0.6260.99
424_P427_G0.6260.99
146_L149_F0.6250.99
234_G255_L0.6240.99
228_L237_A0.6210.99
154_D160_I0.6210.99
77_P80_S0.6210.99
346_E353_N0.6210.99
511_V517_S0.6200.99
79_E82_I0.6200.99
343_A494_S0.6200.99
347_R356_H0.6200.99
279_V282_V0.6190.99
235_V248_N0.6190.99
441_N506_L0.6190.99
292_E328_R0.6190.99
337_L340_Y0.6180.99
236_V247_I0.6180.99
276_V279_V0.6170.99
379_N383_E0.6160.99
107_R110_H0.6160.99
353_N381_Y0.6160.99
413_H476_D0.6140.99
102_D105_S0.6130.99
354_K506_L0.6130.99
238_V266_L0.6130.99
351_F384_E0.6110.99
97_F101_T0.6090.99
18_S203_K0.6090.99
413_H455_G0.6090.99
145_A153_Y0.6090.99
406_N410_D0.6080.99
327_V333_R0.6080.99
140_G147_R0.6070.99
87_E91_K0.6050.99
234_G238_V0.6050.99
414_T455_G0.6050.99
326_E330_L0.6040.99
406_N409_T0.6030.99
378_A382_Q0.6030.99
178_D181_W0.6030.99
340_Y348_S0.6020.99
343_A346_E0.6020.99
345_R351_F0.5990.99
434_T438_T0.5990.99
231_I320_T0.5980.99
384_E392_I0.5970.99
396_V404_K0.5970.99
64_A67_P0.5960.99
349_H354_K0.5960.99
248_N325_T0.5930.99
234_G323_D0.5930.99
172_V176_I0.5930.99
226_A230_S0.5910.98
397_I417_L0.5910.98
435_L511_V0.5910.98
465_R533_Q0.5890.98
82_I89_V0.5880.98
29_L32_V0.5870.98
381_Y387_S0.5840.98
101_T164_A0.5840.98
235_V246_L0.5830.98
183_I186_S0.5830.98
291_D295_T0.5830.98
448_E500_R0.5820.98
220_L227_M0.5820.98
346_E356_H0.5810.98
481_A495_T0.5810.98
412_G455_G0.5810.98
169_L173_T0.5810.98
464_Y469_L0.5800.98
43_Q47_M0.5800.98
316_G321_F0.5790.98
244_V248_N0.5790.98
470_H519_A0.5790.98
420_E464_Y0.5780.98
353_N450_L0.5770.98
356_H502_V0.5770.98
391_K509_Q0.5770.98
347_R382_Q0.5760.98
394_S425_D0.5740.98
303_I321_F0.5740.98
511_V514_L0.5740.98
215_Y219_T0.5730.98
145_A166_G0.5720.98
518_I532_V0.5720.98
306_V318_I0.5720.98
227_M230_S0.5710.98
433_A436_I0.5710.98
448_E497_G0.5710.98
140_G143_A0.5710.98
161_G164_A0.5710.98
115_R118_Q0.5710.98
107_R111_P0.5710.98
435_L534_I0.5700.98
402_I406_N0.5680.98
393_K500_R0.5680.98
491_K505_A0.5680.98
441_N444_E0.5680.98
238_V305_T0.5670.98
353_N500_R0.5670.98
244_V251_A0.5670.98
350_E381_Y0.5650.98
472_E521_E0.5650.98
65_D69_I0.5650.98
360_G437_T0.5630.98
243_E263_D0.5590.98
240_D313_V0.5590.98
337_L341_A0.5590.98
82_I109_S0.5580.98
441_N500_R0.5580.98
199_C203_K0.5580.98
439_L460_V0.5570.98
402_I405_I0.5560.98
492_G500_R0.5550.98
356_H377_T0.5550.98
150_T153_Y0.5540.98
165_I168_E0.5530.98
399_G404_K0.5530.98
345_R356_H0.5530.98
413_H458_I0.5520.98
170_S174_Q0.5520.98
491_K502_V0.5510.98
448_E498_S0.5510.98
164_A168_E0.5510.98
377_T384_E0.5510.98
396_V401_L0.5500.98
282_V305_T0.5500.98
290_R295_T0.5500.98
65_D68_E0.5490.98
350_E498_S0.5490.98
298_D302_L0.5490.98
415_L458_I0.5490.98
340_Y353_N0.5460.97
50_D54_N0.5460.97
350_E507_V0.5460.97
46_D49_R0.5460.97
408_A413_H0.5440.97
146_L150_T0.5430.97
361_L494_S0.5420.97
277_V280_S0.5410.97
147_R166_G0.5410.97
141_F149_F0.5400.97
289_R295_T0.5400.97
138_N147_R0.5370.97
492_G505_A0.5360.97
346_E494_S0.5360.97
413_H494_S0.5350.97
356_H361_L0.5350.97
58_A61_R0.5350.97
211_G214_P0.5340.97
380_N436_I0.5340.97
239_D316_G0.5330.97
424_P536_W0.5300.97
389_L392_I0.5300.97
182_S190_G0.5290.97
88_A91_K0.5270.97
370_L374_I0.5270.97
427_G430_D0.5270.97
282_V287_T0.5260.97
343_A444_E0.5260.97
200_I204_V0.5260.97
54_N58_A0.5260.97
468_W536_W0.5260.97
53_A56_A0.5260.97
161_G166_G0.5250.97
354_K385_I0.5250.97
450_L478_P0.5250.97
161_G167_L0.5220.97
61_R65_D0.5220.97
55_K60_A0.5210.97
84_A88_A0.5210.97
278_D283_L0.5210.97
374_I377_T0.5210.97
343_A351_F0.5210.97
81_G85_I0.5210.97
395_P398_A0.5200.97
146_L169_L0.5200.97
345_R352_M0.5190.97
340_Y345_R0.5190.97
404_K444_E0.5190.97
162_V166_G0.5180.97
309_R315_I0.5180.97
423_L427_G0.5180.97
162_V165_I0.5180.97
370_L377_T0.5170.97
449_A497_G0.5170.97
440_G444_E0.5160.96
397_I419_S0.5160.96
264_E269_L0.5150.96
353_N385_I0.5140.96
339_N346_E0.5140.96
479_G527_F0.5120.96
377_T382_Q0.5120.96
217_I221_F0.5120.96
127_K130_N0.5120.96
401_L415_L0.5110.96
348_S448_E0.5090.96
71_Q75_K0.5090.96
378_A381_Y0.5090.96
449_A476_D0.5090.96
252_Q257_Y0.5070.96
507_V532_V0.5070.96
232_K235_V0.5070.96
89_V93_N0.5060.96
472_E532_V0.5050.96
351_F388_L0.5040.96
227_M237_A0.5040.96
403_S436_I0.5040.96
371_E378_A0.5030.96
343_A352_M0.5030.96
263_D268_T0.5030.96
187_V191_M0.5020.96
495_T500_R0.5020.96
179_S183_I0.5020.96
380_N384_E0.5010.96
240_D314_I0.5010.96
102_D109_S0.5010.96
420_E462_L0.5000.96
182_S186_S0.5000.96
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4i5sA 2 0.5967 100 0.456 Contact Map
3a0rA 2 0.5672 100 0.46 Contact Map
4gczA 2 0.6059 100 0.469 Contact Map
4r3aA 1 0.547 100 0.567 Contact Map
2c2aA 2 0.3904 100 0.608 Contact Map
4q20A 2 0.3738 100 0.612 Contact Map
4e01A 3 0.4936 100 0.622 Contact Map
4mpcA 2 0.5212 100 0.623 Contact Map
4bixA 2 0.3886 100 0.623 Contact Map
3jz3A 2 0.2578 100 0.623 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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