YTFL - ECOLI - GREMLIN Contacts

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YTFL - UPF0053 inner membrane protein YtfL

UniProt:	P0AE45	Sequences: MLNSILVILCLIAVSAFFSMSEISLAASRKIKLKLLADEGNINAQRVLNMQENPGMFFTVVQIGLNAVAILGGIVGDAAFSPAFHSLFSRYMSAELSEQLSFILSFSLVTGMFILFADLTPKRIGMIAPEAVALRIINPMRFCLYVCTPLVWFFNGLANIIFRIFKLPMVRKDDITSDDIYAVVEAGALAGVLRKQEHELIENVFELESRTVPSSMTPRENVIWFDLHEDEQSLKNKVAEHPHSKFLVCNEDIDHIIGYVDSKDLLNRVLANQSLALNSGVQIRNTLIVPDTLTLSEALESFKTAGEDFAVIMNEYALVVGIITLNDVMTTLMGDLVGQGLEEQIVARDENSWLIDGGTPIDDVMRVLDIDEFPQSGNYETIGGFMMFMLRKIPKRTDSVKFAGYKFEVVDIDNYRIDQLLVTRIDSKATALSPKLPDAKDKEESVA	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG12512
Length:	447 (410)
Sequences:	7402 (4935)
Seq/√Len:	243.7

ECOLI - YTFL YFJD YEGH YOAE CORC
BACSU - YHDT YHDP YUGS YQHB YRKA
HALSA - Q9HN02 Q9HHN9 Q9HRX1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
222_V	322_I	4.136	1.00
392_K	398_D	3.945	1.00
355_I	422_V	3.806	1.00
401_K	406_K	3.480	1.00
399_S	406_K	3.426	1.00
399_S	408_E	3.311	1.00
250_N	255_H	3.217	1.00
386_M	420_L	3.010	1.00
289_V	298_A	2.984	1.00
230_D	233_S	2.975	1.00
354_L	410_V	2.916	1.00
229_E	233_S	2.897	1.00
250_N	280_G	2.847	1.00
224_W	249_C	2.827	1.00
264_D	284_R	2.807	1.00
349_D	352_S	2.772	1.00
406_K	423_T	2.722	1.00
408_E	423_T	2.695	1.00
128_A	131_A	2.639	1.00
248_V	283_I	2.582	1.00
354_L	419_Q	2.581	1.00
141_R	145_Y	2.510	1.00
406_K	425_I	2.486	1.00
311_V	322_I	2.464	1.00
227_L	250_N	2.421	1.00
111_G	157_L	2.404	1.00
212_V	298_A	2.385	1.00
293_L	301_S	2.374	1.00
152_W	156_G	2.366	1.00
364_V	368_L	2.305	1.00
222_V	319_V	2.265	1.00
33_L	47_V	2.243	1.00
385_F	402_F	2.204	1.00
410_V	421_L	2.176	1.00
311_V	319_V	2.136	1.00
278_N	281_V	2.105	1.00
382_I	420_L	2.093	1.00
348_R	352_S	2.077	1.00
17_F	139_P	2.076	1.00
224_W	253_I	2.062	1.00
352_S	421_L	2.024	1.00
46_R	141_R	2.018	1.00
411_D	419_Q	2.008	1.00
15_S	69_A	1.982	1.00
46_R	138_N	1.976	1.00
225_F	234_L	1.962	1.00
298_A	323_I	1.952	1.00
227_L	280_G	1.947	1.00
56_M	148_T	1.939	1.00
364_V	422_V	1.898	1.00
359_T	364_V	1.890	1.00
259_Y	286_T	1.882	1.00
215_S	295_L	1.873	1.00
227_L	257_I	1.864	1.00
37_A	48_L	1.852	1.00
160_I	164_I	1.850	1.00
135_R	139_P	1.837	1.00
413_D	418_D	1.822	1.00
352_S	423_T	1.816	1.00
36_L	134_L	1.811	1.00
32_K	130_E	1.781	1.00
225_F	248_V	1.778	1.00
249_C	256_I	1.767	1.00
41_N	134_L	1.766	1.00
184_V	201_I	1.749	1.00
236_N	240_E	1.739	1.00
411_D	418_D	1.735	1.00
49_N	141_R	1.723	1.00
345_I	359_T	1.714	1.00
229_E	234_L	1.697	1.00
354_L	421_L	1.647	1.00
228_H	250_N	1.627	1.00
359_T	382_I	1.626	1.00
215_S	323_I	1.622	1.00
309_F	322_I	1.614	1.00
347_A	350_E	1.612	1.00
210_R	214_S	1.603	1.00
365_M	370_I	1.597	1.00
326_N	330_T	1.594	1.00
408_E	421_L	1.587	1.00
347_A	353_W	1.582	1.00
21_S	136_I	1.573	1.00
364_V	382_I	1.565	1.00
244_S	261_D	1.564	1.00
355_I	382_I	1.553	1.00
15_S	65_L	1.547	1.00
223_I	237_K	1.531	1.00
407_F	420_L	1.530	1.00
156_G	160_I	1.526	1.00
386_M	407_F	1.525	1.00
204_V	332_L	1.523	1.00
46_R	137_I	1.500	1.00
200_L	204_V	1.494	1.00
291_D	320_V	1.490	1.00
404_G	425_I	1.486	1.00
200_L	332_L	1.481	1.00
7_V	75_V	1.470	1.00
348_R	351_N	1.463	1.00
252_D	255_H	1.450	1.00
226_D	229_E	1.434	1.00
387_M	417_I	1.432	1.00
293_L	298_A	1.420	1.00
295_L	328_V	1.420	1.00
43_N	134_L	1.411	1.00
300_E	303_K	1.407	1.00
254_D	318_L	1.406	1.00
401_K	425_I	1.403	1.00
223_I	243_H	1.401	1.00
329_M	333_M	1.396	1.00
386_M	409_V	1.386	1.00
131_A	135_R	1.380	1.00
402_F	407_F	1.377	1.00
348_R	421_L	1.371	1.00
34_K	38_D	1.369	1.00
386_M	400_V	1.361	1.00
250_N	257_I	1.360	1.00
355_I	364_V	1.359	1.00
405_Y	424_R	1.348	1.00
379_Y	388_F	1.346	1.00
47_V	137_I	1.342	1.00
60_V	143_C	1.335	1.00
120_T	161_I	1.334	1.00
34_K	48_L	1.332	1.00
410_V	419_Q	1.332	1.00
389_M	402_F	1.331	1.00
20_M	132_V	1.329	1.00
103_I	107_S	1.325	1.00
36_L	41_N	1.325	1.00
245_K	308_D	1.323	1.00
233_S	236_N	1.316	1.00
45_Q	49_N	1.315	1.00
220_E	318_L	1.311	1.00
259_Y	309_F	1.308	1.00
404_G	424_R	1.294	1.00
136_I	139_P	1.289	1.00
47_V	133_A	1.286	1.00
6_L	10_C	1.286	1.00
219_R	254_D	1.281	1.00
348_R	354_L	1.276	1.00
43_N	138_N	1.275	1.00
40_G	44_A	1.271	1.00
5_I	9_L	1.267	1.00
70_I	73_G	1.264	1.00
223_I	241_H	1.261	1.00
156_G	159_N	1.253	1.00
405_Y	422_V	1.244	1.00
139_P	142_F	1.243	1.00
386_M	390_L	1.233	1.00
17_F	136_I	1.230	1.00
345_I	367_V	1.224	1.00
145_Y	148_T	1.223	1.00
48_L	52_E	1.216	1.00
148_T	152_W	1.209	1.00
361_I	365_M	1.206	1.00
309_F	324_T	1.205	1.00
99_Q	103_I	1.200	1.00
76_G	109_V	1.199	1.00
138_N	142_F	1.195	1.00
60_V	151_V	1.192	1.00
41_N	44_A	1.181	1.00
18_F	64_G	1.179	1.00
229_E	237_K	1.173	1.00
124_I	167_L	1.168	1.00
10_C	14_V	1.158	1.00
338_G	341_L	1.148	1.00
14_V	68_V	1.147	1.00
223_I	246_F	1.141	1.00
37_A	45_Q	1.141	1.00
226_D	251_E	1.137	1.00
256_I	311_V	1.127	1.00
23_I	26_A	1.125	1.00
219_R	318_L	1.124	1.00
301_S	305_A	1.122	1.00
326_N	336_L	1.112	1.00
18_F	143_C	1.107	1.00
241_H	246_F	1.105	1.00
286_T	311_V	1.104	1.00
351_N	424_R	1.100	1.00
276_A	279_S	1.099	1.00
33_L	48_L	1.097	1.00
290_P	293_L	1.083	1.00
212_V	312_I	1.079	1.00
268_R	282_Q	1.079	1.00
400_V	407_F	1.071	1.00
365_M	373_F	1.070	1.00
260_V	282_Q	1.070	1.00
336_L	341_L	1.064	1.00
245_K	326_N	1.063	1.00
162_F	167_L	1.057	1.00
212_V	289_V	1.056	1.00
62_Q	65_L	1.053	1.00
43_N	47_V	1.053	1.00
254_D	319_V	1.047	1.00
368_L	405_Y	1.044	1.00
15_S	19_S	1.043	1.00
387_M	393_I	1.040	1.00
383_G	387_M	1.038	1.00
69_A	113_F	1.034	1.00
65_L	69_A	1.033	1.00
346_V	354_L	1.026	1.00
221_N	416_R	1.021	1.00
224_W	319_V	1.017	1.00
28_S	33_L	1.016	1.00
50_M	57_F	1.015	1.00
257_I	283_I	0.997	1.00
385_F	407_F	0.988	1.00
117_A	122_K	0.983	1.00
407_F	422_V	0.982	1.00
232_Q	236_N	0.979	1.00
101_S	105_S	0.977	1.00
225_F	279_S	0.977	1.00
8_I	72_G	0.975	1.00
42_I	45_Q	0.972	1.00
163_R	168_P	0.967	1.00
49_N	53_N	0.964	1.00
19_S	23_I	0.963	1.00
180_I	187_G	0.960	1.00
153_F	156_G	0.956	1.00
160_I	163_R	0.955	1.00
175_I	183_V	0.954	1.00
53_N	56_M	0.952	1.00
28_S	129_P	0.950	1.00
235_K	239_A	0.950	1.00
97_S	101_S	0.949	1.00
227_L	283_I	0.949	1.00
142_F	145_Y	0.948	1.00
226_D	249_C	0.945	1.00
302_F	310_A	0.941	1.00
356_D	419_Q	0.940	1.00
289_V	310_A	0.938	1.00
33_L	51_Q	0.938	1.00
401_K	404_G	0.937	1.00
365_M	371_D	0.934	1.00
238_V	246_F	0.933	1.00
8_I	109_V	0.932	1.00
251_E	255_H	0.921	1.00
215_S	328_V	0.919	1.00
357_G	382_I	0.916	1.00
188_A	198_H	0.914	1.00
389_M	400_V	0.913	1.00
390_L	400_V	0.911	1.00
287_L	301_S	0.910	1.00
22_E	122_K	0.907	1.00
21_S	140_M	0.905	1.00
236_N	239_A	0.904	1.00
373_F	385_F	0.902	1.00
293_L	297_E	0.900	1.00
44_A	134_L	0.895	1.00
213_P	291_D	0.894	1.00
345_I	353_W	0.890	1.00
396_R	411_D	0.890	1.00
76_G	80_F	0.887	1.00
231_E	234_L	0.884	1.00
8_I	79_A	0.882	1.00
289_V	312_I	0.870	0.99
74_I	106_F	0.869	0.99
35_L	39_E	0.868	0.99
221_N	358_G	0.867	0.99
187_G	191_G	0.865	0.99
135_R	138_N	0.864	0.99
280_G	283_I	0.862	0.99
20_M	125_G	0.862	0.99
345_I	355_I	0.862	0.99
100_L	104_L	0.859	0.99
326_N	341_L	0.856	0.99
337_V	344_Q	0.853	0.99
308_D	329_M	0.850	0.99
107_S	111_G	0.849	0.99
118_D	122_K	0.848	0.99
74_I	77_D	0.843	0.99
12_I	117_A	0.841	0.99
180_I	193_L	0.841	0.99
212_V	323_I	0.838	0.99
360_P	363_D	0.838	0.99
357_G	383_G	0.838	0.99
207_L	299_L	0.838	0.99
149_P	153_F	0.835	0.99
236_N	270_L	0.835	0.99
144_L	148_T	0.833	0.99
287_L	310_A	0.833	0.99
390_L	394_P	0.831	0.99
77_D	105_S	0.827	0.99
238_V	265_L	0.823	0.99
72_G	109_V	0.821	0.99
314_N	320_V	0.820	0.99
159_N	169_M	0.818	0.99
207_L	328_V	0.818	0.99
133_A	137_I	0.817	0.99
37_A	41_N	0.815	0.99
159_N	163_R	0.815	0.99
383_G	416_R	0.812	0.99
227_L	234_L	0.810	0.99
385_F	389_M	0.803	0.99
70_I	106_F	0.798	0.99
337_V	343_E	0.791	0.99
50_M	137_I	0.791	0.99
46_R	49_N	0.790	0.99
228_H	280_G	0.786	0.99
32_K	36_L	0.786	0.99
314_N	317_A	0.785	0.99
177_S	209_S	0.784	0.99
17_F	64_G	0.782	0.99
264_D	340_G	0.782	0.99
326_N	335_D	0.780	0.99
60_V	144_L	0.773	0.99
335_D	338_G	0.772	0.99
222_V	253_I	0.772	0.99
7_V	11_L	0.770	0.99
7_V	10_C	0.769	0.99
65_L	118_D	0.768	0.99
20_M	24_S	0.768	0.99
330_T	335_D	0.767	0.99
66_N	110_T	0.767	0.99
207_L	296_S	0.766	0.99
81_S	85_H	0.765	0.99
16_A	20_M	0.760	0.99
256_I	319_V	0.757	0.98
247_L	311_V	0.756	0.98
315_E	384_G	0.750	0.98
257_I	280_G	0.750	0.98
61_V	140_M	0.747	0.98
65_L	113_F	0.745	0.98
200_L	207_L	0.744	0.98
12_I	112_M	0.743	0.98
374_P	379_Y	0.741	0.98
314_N	318_L	0.740	0.98
70_I	110_T	0.740	0.98
326_N	339_Q	0.740	0.98
15_S	113_F	0.739	0.98
225_F	246_F	0.739	0.98
55_G	123_R	0.738	0.98
138_N	141_R	0.738	0.98
348_R	411_D	0.738	0.98
119_L	154_F	0.737	0.98
326_N	331_T	0.736	0.98
73_G	77_D	0.735	0.98
36_L	39_E	0.734	0.98
81_S	101_S	0.731	0.98
238_V	262_S	0.731	0.98
177_S	181_Y	0.729	0.98
247_L	256_I	0.728	0.98
357_G	417_I	0.728	0.98
290_P	315_E	0.728	0.98
62_Q	69_A	0.727	0.98
261_D	264_D	0.726	0.98
73_G	76_G	0.725	0.98
245_K	261_D	0.722	0.98
12_I	72_G	0.722	0.98
28_S	47_V	0.722	0.98
356_D	359_T	0.721	0.98
330_T	338_G	0.721	0.98
65_L	119_L	0.720	0.98
65_L	68_V	0.719	0.98
219_R	314_N	0.718	0.98
213_P	320_V	0.717	0.98
379_Y	385_F	0.716	0.98
308_D	326_N	0.716	0.98
30_K	52_E	0.713	0.98
70_I	77_D	0.712	0.98
32_K	35_L	0.711	0.98
287_L	305_A	0.708	0.98
23_I	125_G	0.704	0.98
269_V	272_N	0.704	0.98
15_S	66_N	0.703	0.98
244_S	263_K	0.701	0.97
15_S	68_V	0.700	0.97
217_T	337_V	0.700	0.97
11_L	71_L	0.698	0.97
66_N	122_K	0.694	0.97
212_V	293_L	0.693	0.97
132_V	136_I	0.693	0.97
371_D	403_A	0.692	0.97
336_L	339_Q	0.692	0.97
301_S	304_T	0.691	0.97
247_L	259_Y	0.686	0.97
231_E	277_L	0.685	0.97
281_V	285_N	0.684	0.97
249_C	252_D	0.683	0.97
71_L	102_F	0.683	0.97
24_S	133_A	0.678	0.97
62_Q	66_N	0.675	0.97
211_T	214_S	0.674	0.97
326_N	338_G	0.673	0.97
177_S	205_F	0.672	0.97
43_N	46_R	0.670	0.97
361_I	379_Y	0.669	0.97
181_Y	202_E	0.669	0.97
393_I	412_I	0.668	0.97
13_A	16_A	0.668	0.97
370_I	405_Y	0.667	0.97
234_L	238_V	0.665	0.97
223_I	240_E	0.665	0.97
198_H	202_E	0.664	0.97
177_S	208_E	0.663	0.97
389_M	403_A	0.662	0.96
351_N	426_D	0.662	0.96
390_L	398_D	0.657	0.96
62_Q	73_G	0.657	0.96
54_P	57_F	0.656	0.96
68_V	72_G	0.656	0.96
77_D	81_S	0.655	0.96
378_N	388_F	0.654	0.96
325_L	336_L	0.652	0.96
150_L	154_F	0.652	0.96
43_N	137_I	0.651	0.96
239_A	271_A	0.651	0.96
66_N	113_F	0.650	0.96
74_I	102_F	0.649	0.96
239_A	267_N	0.647	0.96
43_N	135_R	0.647	0.96
15_S	62_Q	0.645	0.96
245_K	309_F	0.644	0.96
19_S	113_F	0.643	0.96
203_N	332_L	0.643	0.96
37_A	40_G	0.642	0.96
72_G	113_F	0.638	0.96
12_I	15_S	0.638	0.96
55_G	159_N	0.638	0.96
331_T	335_D	0.637	0.96
142_F	146_V	0.637	0.96
116_F	161_I	0.636	0.96
273_Q	276_A	0.636	0.96
219_R	315_E	0.635	0.96
225_F	237_K	0.635	0.96
347_A	352_S	0.633	0.95
286_T	309_F	0.632	0.95
364_V	367_V	0.631	0.95
65_L	117_A	0.630	0.95
19_S	118_D	0.628	0.95
225_F	238_V	0.627	0.95
396_R	412_I	0.625	0.95
14_V	18_F	0.623	0.95
227_L	230_D	0.623	0.95
345_I	364_V	0.623	0.95
110_T	114_I	0.623	0.95
361_I	373_F	0.619	0.95
299_L	333_M	0.619	0.95
80_F	105_S	0.618	0.95
49_N	145_Y	0.618	0.95
22_E	118_D	0.617	0.95
102_F	106_F	0.617	0.95
68_V	110_T	0.617	0.95
298_A	328_V	0.616	0.95
249_C	253_I	0.614	0.95
351_N	423_T	0.614	0.95
300_E	304_T	0.613	0.95
168_P	171_R	0.613	0.95
365_M	377_G	0.610	0.94
85_H	98_E	0.609	0.94
63_I	150_L	0.608	0.94
96_L	99_Q	0.608	0.94
237_K	240_E	0.607	0.94
143_C	147_C	0.606	0.94
36_L	44_A	0.605	0.94
23_I	63_I	0.603	0.94
50_M	144_L	0.603	0.94
199_E	203_N	0.602	0.94
256_I	288_I	0.601	0.94
244_S	338_G	0.599	0.94
33_L	44_A	0.598	0.94
277_L	281_V	0.598	0.94
154_F	158_A	0.597	0.94
184_V	188_A	0.595	0.94
347_A	351_N	0.595	0.94
313_M	319_V	0.594	0.94
346_V	350_E	0.594	0.94
287_L	307_E	0.593	0.94
58_F	62_Q	0.592	0.94
299_L	325_L	0.591	0.93
261_D	284_R	0.590	0.93
19_S	65_L	0.589	0.93
367_V	370_I	0.589	0.93
361_I	364_V	0.589	0.93
383_G	417_I	0.589	0.93
127_I	167_L	0.588	0.93
28_S	130_E	0.587	0.93
201_I	205_F	0.587	0.93
95_E	99_Q	0.585	0.93
330_T	341_L	0.585	0.93
66_N	106_F	0.585	0.93
335_D	339_Q	0.584	0.93
58_F	117_A	0.583	0.93
70_I	105_S	0.583	0.93
37_A	43_N	0.582	0.93
412_I	415_Y	0.582	0.93
244_S	339_Q	0.581	0.93
106_F	109_V	0.580	0.93
206_E	209_S	0.577	0.93
238_V	266_L	0.577	0.93
346_V	419_Q	0.577	0.93
299_L	328_V	0.577	0.93
395_K	398_D	0.577	0.93
233_S	237_K	0.575	0.93
308_D	336_L	0.574	0.92
62_Q	119_L	0.573	0.92
73_G	110_T	0.572	0.92
66_N	69_A	0.572	0.92
329_M	336_L	0.571	0.92
53_N	144_L	0.571	0.92
85_H	101_S	0.570	0.92
51_Q	54_P	0.569	0.92
225_F	229_E	0.569	0.92
131_A	134_L	0.569	0.92
147_C	150_L	0.568	0.92
146_V	149_P	0.567	0.92
212_V	294_T	0.566	0.92
28_S	57_F	0.566	0.92
326_N	340_G	0.566	0.92
401_K	423_T	0.566	0.92
214_S	380_E	0.565	0.92
283_I	286_T	0.565	0.92
259_Y	283_I	0.565	0.92
49_N	52_E	0.560	0.92
245_K	339_Q	0.560	0.92
163_R	169_M	0.560	0.92
161_I	165_F	0.558	0.91
16_A	117_A	0.558	0.91
66_N	70_I	0.557	0.91
247_L	380_E	0.555	0.91
74_I	78_A	0.555	0.91
123_R	126_M	0.554	0.91
4_S	8_I	0.553	0.91
129_P	132_V	0.553	0.91
359_T	363_D	0.553	0.91
71_L	75_V	0.553	0.91
234_L	279_S	0.553	0.91
63_I	110_T	0.552	0.91
208_E	296_S	0.552	0.91
298_A	302_F	0.550	0.91
23_I	62_Q	0.550	0.91
45_Q	48_L	0.549	0.91
213_P	380_E	0.548	0.91
365_M	376_S	0.548	0.91
361_I	382_I	0.547	0.91
19_S	69_A	0.547	0.91
81_S	98_E	0.546	0.91
219_R	316_Y	0.546	0.91
56_M	144_L	0.545	0.90
30_K	48_L	0.543	0.90
365_M	374_P	0.543	0.90
5_I	79_A	0.542	0.90
19_S	77_D	0.541	0.90
26_A	59_T	0.540	0.90
406_K	410_V	0.539	0.90
29_R	179_D	0.539	0.90
22_E	66_N	0.538	0.90
74_I	109_V	0.538	0.90
168_P	172_K	0.538	0.90
288_I	313_M	0.538	0.90
31_I	182_A	0.536	0.90
330_T	336_L	0.536	0.90
85_H	97_S	0.535	0.90
162_F	166_K	0.535	0.90
155_N	158_A	0.532	0.89
417_I	420_L	0.532	0.89
329_M	338_G	0.532	0.89
179_D	187_G	0.532	0.89
47_V	51_Q	0.531	0.89
61_V	68_V	0.531	0.89
62_Q	113_F	0.530	0.89
129_P	133_A	0.530	0.89
181_Y	206_E	0.529	0.89
57_F	63_I	0.529	0.89
374_P	377_G	0.528	0.89
11_L	68_V	0.527	0.89
21_S	25_L	0.527	0.89
254_D	315_E	0.527	0.89
348_R	418_D	0.526	0.89
68_V	106_F	0.526	0.89
73_G	78_A	0.526	0.89
58_F	122_K	0.525	0.89
297_E	300_E	0.525	0.89
59_T	66_N	0.524	0.89
385_F	400_V	0.523	0.89
27_A	126_M	0.521	0.88
187_G	192_V	0.520	0.88
69_A	119_L	0.519	0.88
326_N	333_M	0.519	0.88
418_D	421_L	0.518	0.88
325_L	333_M	0.518	0.88
245_K	259_Y	0.517	0.88
19_S	66_N	0.516	0.88
185_E	202_E	0.516	0.88
353_W	367_V	0.515	0.88
77_D	114_I	0.514	0.88
19_S	61_V	0.514	0.88
387_M	398_D	0.512	0.88
330_T	339_Q	0.512	0.88
226_D	250_N	0.512	0.88
73_G	106_F	0.511	0.87
77_D	102_F	0.511	0.87
268_R	272_N	0.511	0.87
207_L	294_T	0.510	0.87
219_R	320_V	0.510	0.87
214_S	387_M	0.510	0.87
244_S	308_D	0.510	0.87
124_I	128_A	0.509	0.87
290_P	313_M	0.508	0.87
261_D	308_D	0.508	0.87
205_F	208_E	0.507	0.87
215_S	331_T	0.506	0.87
253_I	319_V	0.506	0.87
308_D	325_L	0.506	0.87
28_S	36_L	0.506	0.87
272_N	276_A	0.505	0.87
355_I	367_V	0.505	0.87
248_V	279_S	0.505	0.87
272_N	277_L	0.503	0.87
385_F	403_A	0.502	0.87
368_L	422_V	0.501	0.86
23_I	54_P	0.501	0.86
289_V	293_L	0.501	0.86
227_L	278_N	0.501	0.86
25_L	133_A	0.500	0.86
213_P	217_T	0.500	0.86

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4hg0A	2	0.5123	100	0.51	Contact Map
3lhhA	1	0.2796	100	0.77	Contact Map
3ocoA	2	0.302	99.9	0.787	Contact Map
3oi8A	2	0.349	99.9	0.788	Contact Map
3ocmA	5	0.3333	99.9	0.788	Contact Map
2v8qE	1	0.5347	99.9	0.795	Contact Map
3kxrA	3	0.3602	99.9	0.802	Contact Map
3lv9A	2	0.2908	99.9	0.803	Contact Map
4iysA	2	0.3177	99.9	0.81	Contact Map
3t4nC	1	0.566	99.9	0.816	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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