ARTQ - ECOLI - GREMLIN Contacts

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ARTQ - Arginine ABC transporter permease protein ArtQ

UniProt:	P0AE34	Sequences: MNEFFPLASAAGMTVGLAVCALIVGLALAMFFAVWESAKWRPVAWAGSALVTILRGLPEILVVLFIYFGSSQLLLTLSDGFTINLGFVQIPVQMDIENFDVSPFLCGVIALSLLYAAYASQTLRGALKAVPVGQWESGQALGLSKSAIFFRLVMPQMWRHALPGLGNQWLVLLKDTALVSLISVNDLMLQTKSIATRTQEPFTWYIVAAAIYLVITLLSQYILKRIDLRATRFERRPS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG11626
Length:	238 (204)
Sequences:	15302 (8964)
Seq/√Len:	627.6

ECOLI - ARTQ GLTJ HISQ ARTM HISM YHDY GLTK YHDX GLNP YECS
BACSU - TCYM GLNM YCKA GLNP ARTQ YXEN TCYL

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
24_V	112_S	3.307	1.00
166_G	223_L	3.124	1.00
138_G	148_I	2.969	1.00
107_G	179_V	2.823	1.00
200_E	203_T	2.755	1.00
12_G	16_G	2.701	1.00
191_T	208_A	2.673	1.00
35_W	47_G	2.592	1.00
32_F	120_S	2.486	1.00
144_S	147_A	2.434	1.00
134_Q	156_Q	2.264	1.00
32_F	116_A	2.145	1.00
36_E	48_S	2.138	1.00
57_L	62_V	2.091	1.00
139_Q	148_I	2.057	1.00
221_Y	225_R	2.044	1.00
135_W	148_I	2.022	1.00
135_W	139_Q	1.965	1.00
42_P	46_A	1.902	1.00
13_M	16_G	1.875	1.00
102_S	105_L	1.873	1.00
146_S	150_F	1.846	1.00
126_A	161_A	1.841	1.00
42_P	45_W	1.827	1.00
195_A	201_P	1.786	1.00
37_S	128_K	1.761	1.00
51_V	120_S	1.741	1.00
20_C	108_V	1.739	1.00
41_R	45_W	1.729	1.00
17_L	179_V	1.704	1.00
28_L	116_A	1.696	1.00
16_G	104_F	1.688	1.00
32_F	47_G	1.687	1.00
191_T	204_W	1.649	1.00
129_A	160_H	1.641	1.00
11_A	215_I	1.640	1.00
33_A	123_L	1.627	1.00
18_A	173_L	1.623	1.00
221_Y	224_K	1.621	1.00
66_I	110_A	1.611	1.00
217_L	221_Y	1.610	1.00
8_A	12_G	1.591	1.00
9_S	12_G	1.579	1.00
13_M	184_V	1.562	1.00
144_S	148_I	1.544	1.00
213_L	217_L	1.501	1.00
121_Q	124_R	1.485	1.00
30_M	123_L	1.485	1.00
145_K	149_F	1.471	1.00
225_R	228_L	1.456	1.00
189_L	193_S	1.431	1.00
25_G	115_Y	1.424	1.00
147_A	151_R	1.396	1.00
119_A	165_L	1.393	1.00
54_L	113_L	1.333	1.00
63_V	110_A	1.299	1.00
18_A	176_T	1.295	1.00
190_Q	193_S	1.285	1.00
147_A	150_F	1.264	1.00
229_R	232_R	1.259	1.00
40_W	45_W	1.258	1.00
143_L	147_A	1.258	1.00
6_P	190_Q	1.252	1.00
45_W	49_A	1.229	1.00
36_E	121_Q	1.228	1.00
135_W	153_V	1.226	1.00
62_V	114_L	1.225	1.00
6_P	9_S	1.218	1.00
124_R	128_K	1.215	1.00
31_F	35_W	1.213	1.00
24_V	108_V	1.211	1.00
41_R	44_A	1.206	1.00
37_S	127_L	1.194	1.00
222_I	225_R	1.190	1.00
22_L	169_W	1.190	1.00
29_A	119_A	1.188	1.00
185_N	189_L	1.179	1.00
20_C	112_S	1.169	1.00
16_G	20_C	1.165	1.00
139_Q	145_K	1.161	1.00
189_L	192_K	1.157	1.00
104_F	108_V	1.156	1.00
127_L	153_V	1.150	1.00
50_L	116_A	1.143	1.00
195_A	205_Y	1.138	1.00
35_W	43_V	1.137	1.00
44_A	48_S	1.130	1.00
173_L	215_I	1.113	1.00
11_A	211_I	1.106	1.00
103_P	183_S	1.105	1.00
138_G	152_L	1.094	1.00
46_A	49_A	1.086	1.00
123_L	161_A	1.085	1.00
26_L	165_L	1.076	1.00
49_A	52_T	1.072	1.00
66_I	106_C	1.063	1.00
47_G	120_S	1.062	1.00
179_V	186_D	1.055	1.00
52_T	217_L	1.049	1.00
108_V	112_S	1.048	1.00
57_L	114_L	1.044	1.00
40_W	43_V	1.042	1.00
39_K	44_A	1.042	1.00
35_W	38_A	1.032	1.00
203_T	206_I	1.028	1.00
62_V	66_I	1.025	1.00
54_L	117_A	1.023	1.00
122_T	168_Q	1.013	1.00
145_K	148_I	1.011	1.00
192_K	195_A	1.008	1.00
63_V	178_L	0.998	1.00
194_I	204_W	0.991	1.00
18_A	169_W	0.977	1.00
46_A	50_L	0.976	1.00
224_K	228_L	0.967	1.00
9_S	13_M	0.956	1.00
119_A	168_Q	0.950	1.00
50_L	54_L	0.950	1.00
52_T	213_L	0.942	1.00
143_L	151_R	0.941	1.00
130_V	157_M	0.932	1.00
67_Y	106_C	0.931	1.00
135_W	145_K	0.929	1.00
28_L	112_S	0.928	1.00
225_R	229_R	0.927	1.00
149_F	154_M	0.922	1.00
40_W	46_A	0.921	1.00
171_V	175_D	0.919	1.00
181_L	185_N	0.918	1.00
101_V	105_L	0.913	1.00
59_E	114_L	0.911	1.00
173_L	219_S	0.906	1.00
193_S	197_R	0.906	1.00
177_A	212_Y	0.906	1.00
5_F	9_S	0.905	1.00
63_V	179_V	0.899	1.00
105_L	108_V	0.898	1.00
23_I	27_A	0.896	1.00
67_Y	182_I	0.895	1.00
21_A	112_S	0.895	1.00
33_A	37_S	0.882	1.00
105_L	109_I	0.880	1.00
45_W	48_S	0.880	1.00
149_F	153_V	0.873	1.00
59_E	175_D	0.868	1.00
14_T	173_L	0.851	1.00
36_E	51_V	0.850	1.00
64_L	68_F	0.845	1.00
74_L	99_F	0.841	1.00
21_A	172_L	0.837	1.00
50_L	117_A	0.835	1.00
115_Y	168_Q	0.833	1.00
173_L	216_T	0.827	1.00
218_L	222_I	0.825	1.00
14_T	212_Y	0.824	1.00
198_T	201_P	0.823	1.00
185_N	190_Q	0.818	1.00
38_A	47_G	0.816	1.00
65_F	69_G	0.813	1.00
187_L	211_I	0.810	1.00
224_K	227_D	0.809	1.00
122_T	164_G	0.806	1.00
103_P	184_V	0.799	1.00
11_A	187_L	0.793	1.00
107_G	182_I	0.792	1.00
33_A	127_L	0.792	1.00
222_I	226_I	0.790	1.00
188_M	205_Y	0.787	1.00
214_V	218_L	0.786	1.00
36_E	44_A	0.786	1.00
133_G	137_S	0.783	1.00
34_V	149_F	0.780	1.00
160_H	164_G	0.780	1.00
27_A	31_F	0.776	1.00
48_S	52_T	0.770	1.00
119_A	123_L	0.770	1.00
111_L	176_T	0.767	1.00
104_F	184_V	0.767	1.00
17_L	184_V	0.765	1.00
130_V	160_H	0.762	1.00
179_V	184_V	0.760	1.00
13_M	186_D	0.759	1.00
22_L	172_L	0.755	1.00
17_L	176_T	0.753	1.00
132_V	136_E	0.753	1.00
28_L	32_F	0.751	1.00
30_M	154_M	0.751	1.00
20_C	24_V	0.749	1.00
188_M	212_Y	0.746	1.00
25_G	119_A	0.746	1.00
20_C	104_F	0.746	1.00
115_Y	175_D	0.746	1.00
17_L	107_G	0.744	1.00
67_Y	103_P	0.740	1.00
60_I	181_L	0.737	1.00
9_S	190_Q	0.731	1.00
70_S	74_L	0.727	1.00
32_F	35_W	0.723	1.00
127_L	149_F	0.719	1.00
62_V	110_A	0.713	1.00
132_V	135_W	0.711	1.00
14_T	18_A	0.707	1.00
19_V	23_I	0.705	1.00
43_V	46_A	0.704	1.00
36_E	120_S	0.703	1.00
127_L	157_M	0.700	1.00
111_L	172_L	0.698	1.00
206_I	210_A	0.690	1.00
5_F	8_A	0.689	1.00
69_G	73_L	0.684	1.00
35_W	46_A	0.684	1.00
15_V	19_V	0.682	1.00
180_S	189_L	0.681	1.00
27_A	112_S	0.674	1.00
32_F	50_L	0.671	1.00
38_A	145_K	0.669	1.00
115_Y	119_A	0.668	1.00
60_I	64_L	0.665	1.00
40_W	44_A	0.665	1.00
54_L	62_V	0.659	1.00
180_S	183_S	0.657	1.00
65_F	206_I	0.655	1.00
103_P	182_I	0.655	1.00
130_V	153_V	0.654	1.00
74_L	101_V	0.653	1.00
53_I	57_L	0.649	1.00
30_M	158_W	0.649	1.00
191_T	195_A	0.645	1.00
49_A	53_I	0.642	1.00
35_W	40_W	0.641	1.00
195_A	204_W	0.640	1.00
219_S	223_L	0.636	1.00
63_V	182_I	0.635	1.00
210_A	214_V	0.632	1.00
177_A	180_S	0.627	1.00
24_V	27_A	0.626	1.00
220_Q	224_K	0.623	1.00
170_L	219_S	0.620	1.00
26_L	123_L	0.619	1.00
207_V	211_I	0.615	1.00
153_V	156_Q	0.611	1.00
6_P	194_I	0.608	1.00
17_L	21_A	0.607	1.00
27_A	30_M	0.605	1.00
202_F	206_I	0.603	1.00
188_M	208_A	0.603	1.00
136_E	151_R	0.603	1.00
13_M	104_F	0.602	1.00
21_A	111_L	0.600	1.00
15_V	215_I	0.598	1.00
218_L	225_R	0.594	1.00
144_S	151_R	0.593	1.00
115_Y	172_L	0.592	1.00
26_L	169_W	0.591	1.00
7_L	191_T	0.589	1.00
177_A	188_M	0.587	1.00
66_I	69_G	0.586	1.00
8_A	211_I	0.585	1.00
197_R	200_E	0.584	1.00
204_W	208_A	0.583	1.00
208_A	211_I	0.583	1.00
143_L	148_I	0.581	1.00
17_L	104_F	0.577	1.00
218_L	221_Y	0.576	1.00
55_R	121_Q	0.575	1.00
9_S	16_G	0.569	1.00
8_A	11_A	0.566	1.00
111_L	179_V	0.565	1.00
63_V	107_G	0.564	1.00
168_Q	171_V	0.560	1.00
159_R	230_A	0.559	1.00
183_S	189_L	0.554	1.00
226_I	230_A	0.547	1.00
213_L	216_T	0.542	0.99
164_G	167_N	0.542	0.99
135_W	138_G	0.536	0.99
148_I	153_V	0.536	0.99
162_L	230_A	0.533	0.99
32_F	36_E	0.532	0.99
170_L	216_T	0.532	0.99
122_T	161_A	0.532	0.99
18_A	22_L	0.531	0.99
187_L	212_Y	0.531	0.99
48_S	51_V	0.530	0.99
39_K	42_P	0.529	0.99
12_G	15_V	0.528	0.99
7_L	211_I	0.526	0.99
29_A	123_L	0.520	0.99
70_S	99_F	0.520	0.99
50_L	113_L	0.519	0.99
123_L	127_L	0.516	0.99
114_L	175_D	0.516	0.99
221_Y	228_L	0.514	0.99
194_I	198_T	0.514	0.99
103_P	106_C	0.513	0.99
7_L	207_V	0.512	0.99
132_V	139_Q	0.510	0.99
195_A	198_T	0.507	0.99
29_A	33_A	0.507	0.99
20_C	23_I	0.506	0.99
162_L	226_I	0.504	0.99
138_G	141_L	0.502	0.99
131_P	160_H	0.501	0.99
36_E	47_G	0.500	0.99
32_F	113_L	0.500	0.99
7_L	194_I	0.500	0.99

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4ymuD	2	0.8697	100	0.588	Contact Map
3tuiA	2	0.8697	99.9	0.644	Contact Map
2onkC	2	0.8908	99.9	0.663	Contact Map
3rlfF	1	0.9034	99.9	0.667	Contact Map
3d31C	2	0.8739	99.9	0.672	Contact Map
4tquM	1	0.9412	99.8	0.695	Contact Map
3rlfG	1	0.9118	99.8	0.696	Contact Map
4tquN	1	0.8529	99.7	0.735	Contact Map
2m8gX	1	0.2773	5.1	0.966	Contact Map
3e7lA	2	0.2647	5.1	0.966	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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