GREMLIN Database
RL16 - 50S ribosomal protein L16
UniProt: P0ADY7 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG10877
Length: 136 (133)
Sequences: 1841 (712)
Seq/√Len: 61.7

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
110_E114_R3.6371.00
26_V32_G3.4681.00
117_F130_F3.3561.00
35_A126_I2.9031.00
115_E118_K2.8861.00
30_S106_D2.8381.00
73_I91_Y2.5821.00
34_K129_T2.5091.00
41_L67_V2.4521.00
40_R95_L2.3641.00
110_E132_T2.3621.00
71_K95_L2.2951.00
109_P112_L2.1101.00
57_V105_M2.1031.00
37_G127_K2.1021.00
114_R130_F1.9701.00
121_A128_T1.9291.00
49_A103_Y1.8701.00
53_M63_I1.8101.00
53_M105_M1.7991.00
17_N38_R1.7350.99
76_K80_V1.6850.99
63_I105_M1.6820.99
34_K131_V1.6520.99
15_G71_K1.6500.99
41_L102_L1.6450.99
33_L121_A1.6310.99
75_E90_E1.6200.99
54_T63_I1.6160.99
49_A124_L1.6010.99
42_T45_Q1.5770.99
47_E50_R1.5690.99
28_F66_R1.5570.99
41_L126_I1.5370.99
31_F130_F1.5270.98
12_M72_P1.5220.98
57_V112_L1.5070.98
14_K40_R1.4900.98
77_P80_V1.4350.98
45_Q125_P1.3830.97
70_D100_K1.3800.97
74_T87_G1.3200.96
81_R92_W1.3020.96
118_K122_A1.2940.96
56_A112_L1.2860.96
101_V131_V1.2640.95
57_V60_Q1.2570.95
34_K101_V1.2030.94
23_G27_S1.1900.93
21_A100_K1.1750.93
17_N71_K1.1390.92
77_P81_R1.0950.90
51_R84_K1.0810.89
49_A52_A1.0680.89
7_T92_W1.0540.88
33_L128_T1.0490.88
3_Q7_T1.0300.87
14_K73_I1.0280.87
75_E91_Y1.0130.86
32_G131_V1.0110.86
19_G97_Q1.0100.86
84_K92_W1.0050.86
17_N95_L1.0000.85
40_R71_K0.9860.84
7_T12_M0.9850.84
53_M120_A0.9850.84
26_V131_V0.9780.84
108_V113_A0.9750.84
23_G100_K0.9700.84
14_K76_K0.9690.83
24_T34_K0.9500.82
41_L125_P0.9070.79
73_I95_L0.8990.79
106_D133_K0.8930.78
16_R38_R0.8830.77
57_V63_I0.8770.77
116_A120_A0.8760.77
27_S66_R0.8700.76
74_T89_V0.8690.76
36_V126_I0.8640.76
14_K17_N0.8460.74
51_R63_I0.8370.73
18_R38_R0.8280.73
113_A130_F0.8270.73
26_V101_V0.8260.72
30_S133_K0.8250.72
39_G103_Y0.8200.72
52_A120_A0.8190.72
3_Q14_K0.8070.71
32_G101_V0.8030.70
39_G126_I0.7940.69
67_V126_I0.7770.68
9_F12_M0.7740.67
12_M71_K0.7720.67
46_I67_V0.7710.67
35_A100_K0.7690.67
28_F64_W0.7680.67
53_M57_V0.7640.66
102_L128_T0.7500.65
43_A51_R0.7460.65
108_V112_L0.7410.64
59_R119_L0.7330.63
3_Q43_A0.7330.63
66_R107_G0.7300.63
38_R98_P0.7280.63
63_I117_F0.7190.62
67_V100_K0.7190.62
56_A84_K0.7170.62
17_N20_L0.7160.61
70_D92_W0.7110.61
52_A122_A0.7100.61
46_I68_F0.7050.60
53_M60_Q0.7030.60
52_A119_L0.6980.59
49_A102_L0.6960.59
7_T89_V0.6910.59
1_M32_G0.6910.59
15_G95_L0.6870.58
56_A119_L0.6870.58
97_Q100_K0.6870.58
17_N73_I0.6860.58
105_M117_F0.6850.58
60_Q84_K0.6850.58
12_M70_D0.6840.58
67_V102_L0.6770.57
11_K15_G0.6730.57
23_G133_K0.6730.57
12_M92_W0.6710.56
26_V30_S0.6670.56
71_K93_V0.6590.55
5_K92_W0.6590.55
57_V103_Y0.6550.55
15_G73_I0.6540.55
56_A82_M0.6460.54
17_N39_G0.6430.53
110_E130_F0.6410.53
114_R118_K0.6370.53
55_R116_A0.6290.52
40_R73_I0.6290.52
28_F44_R0.6280.52
3_Q78_L0.6270.51
54_T119_L0.6260.51
105_M113_A0.6260.51
25_D127_K0.6230.51
18_R71_K0.6150.50
13_H22_Q0.6150.50
44_R79_A0.6150.50
40_R89_V0.6110.50
22_Q25_D0.6100.50
89_V92_W0.6040.49
18_R98_P0.6040.49
40_R93_V0.6010.49
72_P92_W0.5990.48
72_P89_V0.5970.48
50_R55_R0.5940.48
29_G64_W0.5930.48
72_P100_K0.5860.47
2_L69_P0.5810.46
20_L24_T0.5780.46
18_R21_A0.5770.46
54_T105_M0.5760.46
32_G104_E0.5750.46
55_R119_L0.5730.45
26_V133_K0.5730.45
112_L118_K0.5720.45
97_Q129_T0.5640.44
67_V96_I0.5640.44
56_A115_E0.5620.44
46_I65_I0.5590.44
15_G40_R0.5570.44
9_F13_H0.5570.44
43_A91_Y0.5540.43
120_A124_L0.5540.43
15_G98_P0.5510.43
57_V106_D0.5500.43
13_H51_R0.5490.43
6_R106_D0.5490.43
1_M5_K0.5490.43
36_V39_G0.5480.43
12_M89_V0.5480.43
80_V84_K0.5460.42
37_G41_L0.5450.42
60_Q120_A0.5450.42
31_F110_E0.5420.42
18_R39_G0.5410.42
24_T100_K0.5400.42
14_K84_K0.5380.41
15_G19_G0.5350.41
9_F89_V0.5320.41
120_A128_T0.5280.40
59_R63_I0.5210.40
39_G67_V0.5200.39
41_L45_Q0.5140.39
6_R9_F0.5090.38
26_V132_T0.5070.38
44_R91_Y0.5060.38
108_V116_A0.5030.38
33_L116_A0.5020.38
53_M56_A0.5010.37
27_S101_V0.5000.37
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4tp9M 1 1 100 0.104 Contact Map
4rb6Q 1 1 100 0.122 Contact Map
3bboO 1 0.9853 100 0.123 Contact Map
1vw4K 1 1 100 0.165 Contact Map
3j7yN 1 0.9926 100 0.203 Contact Map
1ffkF 1 0.9338 100 0.336 Contact Map
2pa2A 1 0.6765 100 0.362 Contact Map
1vq8H 1 0.9853 100 0.366 Contact Map
1vx7Q 1 0.9485 100 0.367 Contact Map
4a17H 1 0.9853 100 0.367 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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