RL14 - ECOLI - GREMLIN Contacts

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RL14 - 50S ribosomal protein L14

UniProt:	P0ADY3	Sequences: MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGPVTRELRSEKFMKIISLAPEVL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG10875
Length:	123 (122)
Sequences:	1575 (587)
Seq/√Len:	53.1

ECOLI - RL14
BACSU - RL14
HALSA - RL14
SULSO - RL14

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
41_I	58_L	4.853	1.00
19_V	84_C	4.141	1.00
21_C	39_I	3.748	1.00
19_V	41_I	3.192	1.00
7_M	18_R	2.997	1.00
5_Q	20_M	2.706	1.00
20_M	44_K	2.574	1.00
60_A	84_C	2.517	1.00
2_I	21_C	2.471	1.00
25_L	40_K	2.320	1.00
18_R	45_E	2.181	1.00
70_R	76_V	2.162	1.00
40_K	59_K	2.103	1.00
90_N	93_Q	2.002	1.00
33_A	62_V	1.981	1.00
19_V	43_I	1.932	1.00
42_T	55_G	1.887	0.99
51_K	95_I	1.855	0.99
88_N	93_Q	1.828	0.99
9_N	81_G	1.825	0.99
7_M	20_M	1.794	0.99
86_L	95_I	1.793	0.99
10_V	19_V	1.773	0.99
107_L	116_I	1.736	0.99
34_G	69_V	1.725	0.99
4_E	23_K	1.622	0.98
59_K	89_N	1.591	0.98
9_N	18_R	1.584	0.98
20_M	42_T	1.564	0.98
34_G	68_G	1.556	0.98
2_I	6_T	1.545	0.98
71_R	106_E	1.502	0.97
77_I	123_L	1.432	0.96
38_I	112_F	1.351	0.95
7_M	44_K	1.264	0.93
95_I	109_S	1.253	0.92
35_V	69_V	1.235	0.92
103_V	107_L	1.199	0.91
92_E	111_K	1.190	0.90
38_I	87_L	1.168	0.89
92_E	112_F	1.165	0.89
114_K	117_S	1.159	0.89
10_V	84_C	1.151	0.89
113_M	116_I	1.118	0.87
4_E	20_M	1.114	0.87
8_L	19_V	1.097	0.86
83_A	109_S	1.091	0.86
50_G	55_G	1.089	0.86
3_Q	6_T	1.085	0.86
108_R	113_M	1.082	0.85
22_I	123_L	1.066	0.84
23_K	29_H	1.059	0.84
39_I	62_V	1.056	0.84
63_V	103_V	1.045	0.83
24_V	33_A	1.036	0.83
2_I	8_L	1.014	0.81
19_V	62_V	0.958	0.78
64_R	83_A	0.954	0.77
14_S	95_I	0.951	0.77
103_V	115_I	0.930	0.75
64_R	101_G	0.923	0.75
53_K	56_D	0.910	0.74
11_A	102_P	0.902	0.73
64_R	81_G	0.892	0.72
35_V	68_G	0.867	0.70
60_A	86_L	0.864	0.70
68_G	76_V	0.858	0.69
45_E	102_P	0.847	0.68
18_R	44_K	0.847	0.68
71_R	74_G	0.844	0.68
116_I	123_L	0.842	0.68
63_V	85_V	0.842	0.68
11_A	63_V	0.841	0.68
88_N	95_I	0.820	0.66
41_I	60_A	0.813	0.65
8_L	39_I	0.811	0.65
8_L	84_C	0.809	0.65
51_K	90_N	0.801	0.64
7_M	42_T	0.791	0.63
41_I	86_L	0.785	0.62
16_A	52_V	0.783	0.62
22_I	56_D	0.778	0.62
58_L	95_I	0.774	0.61
52_V	57_V	0.773	0.61
68_G	78_R	0.764	0.60
27_G	30_R	0.762	0.60
72_P	109_S	0.755	0.59
14_S	23_K	0.746	0.58
98_R	118_L	0.735	0.57
32_Y	96_G	0.733	0.57
111_K	116_I	0.732	0.57
6_T	51_K	0.731	0.57
106_E	115_I	0.726	0.56
65_T	69_V	0.722	0.56
51_K	86_L	0.720	0.56
38_I	92_E	0.716	0.55
61_V	115_I	0.716	0.55
17_R	47_I	0.713	0.55
14_S	51_K	0.708	0.55
14_S	47_I	0.707	0.54
41_I	84_C	0.705	0.54
52_V	56_D	0.703	0.54
87_L	92_E	0.702	0.54
54_K	102_P	0.702	0.54
46_A	50_G	0.694	0.53
52_V	72_P	0.689	0.53
12_D	15_G	0.684	0.52
23_K	28_S	0.679	0.51
58_L	86_L	0.676	0.51
45_E	54_K	0.675	0.51
55_G	65_T	0.673	0.51
14_S	96_G	0.670	0.51
100_F	121_E	0.670	0.51
120_P	123_L	0.667	0.50
104_T	109_S	0.664	0.50
51_K	109_S	0.661	0.50
10_V	16_A	0.658	0.49
17_R	22_I	0.657	0.49
25_L	59_K	0.657	0.49
64_R	102_P	0.653	0.49
81_G	102_P	0.652	0.49
11_A	94_P	0.643	0.48
118_L	121_E	0.640	0.47
61_V	112_F	0.639	0.47
116_I	120_P	0.635	0.47
63_V	83_A	0.635	0.47
88_N	92_E	0.631	0.46
42_T	57_V	0.623	0.46
103_V	108_R	0.623	0.46
26_G	105_R	0.622	0.45
55_G	75_S	0.618	0.45
4_E	66_K	0.617	0.45
64_R	105_R	0.603	0.43
19_V	58_L	0.598	0.43
34_G	65_T	0.595	0.43
35_V	65_T	0.593	0.42
69_V	76_V	0.585	0.42
79_F	102_P	0.583	0.41
59_K	97_T	0.583	0.41
3_Q	31_R	0.581	0.41
90_N	95_I	0.580	0.41
30_R	62_V	0.580	0.41
8_L	21_C	0.577	0.41
16_A	87_L	0.575	0.41
61_V	104_T	0.575	0.41
89_N	92_E	0.572	0.40
94_P	118_L	0.571	0.40
44_K	48_P	0.571	0.40
61_V	100_F	0.559	0.39
11_A	64_R	0.559	0.39
74_G	77_I	0.558	0.39
21_C	25_L	0.554	0.38
105_R	121_E	0.552	0.38
59_K	92_E	0.549	0.38
3_Q	29_H	0.547	0.38
50_G	75_S	0.544	0.37
4_E	42_T	0.542	0.37
64_R	71_R	0.542	0.37
62_V	89_N	0.541	0.37
115_I	118_L	0.541	0.37
29_H	89_N	0.539	0.37
105_R	112_F	0.539	0.37
10_V	43_I	0.539	0.37
22_I	29_H	0.530	0.36
79_F	104_T	0.527	0.36
108_R	122_V	0.526	0.36
96_G	99_I	0.524	0.36
49_R	56_D	0.524	0.36
107_L	118_L	0.523	0.35
6_T	21_C	0.522	0.35
66_K	81_G	0.518	0.35
5_Q	23_K	0.517	0.35
62_V	120_P	0.517	0.35
117_S	121_E	0.516	0.35
68_G	77_I	0.513	0.34
41_I	51_K	0.511	0.34
21_C	84_C	0.506	0.34
23_K	55_G	0.504	0.34
16_A	46_A	0.502	0.33
21_C	88_N	0.501	0.33
55_G	95_I	0.501	0.33
55_G	113_M	0.501	0.33
90_N	114_K	0.500	0.33

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1whiA	2	0.9919	100	0.016	Contact Map
4rb6O	1	0.9919	100	0.016	Contact Map
4tp9K	1	0.9919	100	0.025	Contact Map
3bboM	1	0.9837	100	0.025	Contact Map
1vw4I	1	0.9756	100	0.04	Contact Map
3zf7W	1	0.9593	100	0.063	Contact Map
3j21J	1	0.9593	100	0.069	Contact Map
1vq8K	1	0.9593	100	0.072	Contact Map
4ujrI	1	0.9593	100	0.082	Contact Map
1vx7M	1	0.9593	100	0.083	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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