GREMLIN Database
YQIB - Uncharacterized protein YqiB
UniProt: P0ADU7 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG12185
Length: 140 (131)
Sequences: 357 (230)
Seq/√Len: 20.1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
12_M86_V3.3911.00
80_L87_A3.1060.99
57_T82_H2.8030.99
102_Y105_P2.5900.98
102_Y106_N2.4590.97
106_N109_L2.4400.97
104_Y109_L2.3550.96
78_V87_A2.2110.95
44_Q47_L2.1800.94
61_I78_V2.1580.94
49_I57_T2.0750.92
20_S100_A2.0400.92
53_T58_L2.0220.91
106_N114_E1.9880.91
12_M84_A1.9720.90
8_F12_M1.9060.89
14_L124_D1.8700.88
55_Y84_A1.8420.87
42_N108_K1.8370.87
105_P109_L1.8360.87
76_M121_F1.8240.86
66_P80_L1.7630.84
100_A109_L1.7260.83
27_P129_C1.6350.79
24_R48_T1.5850.77
113_D117_Q1.5150.74
38_Y128_Y1.4690.72
33_G89_V1.4640.71
15_C115_K1.4410.70
114_E117_Q1.4350.70
9_P78_V1.4330.70
25_L125_W1.3780.67
53_T121_F1.3240.63
117_Q124_D1.3060.62
102_Y109_L1.2950.62
94_Q98_F1.2860.61
16_E129_C1.2810.61
15_C104_Y1.2780.61
60_T75_S1.2500.59
51_E58_L1.2410.58
71_W85_M1.2280.57
104_Y113_D1.2090.56
104_Y114_E1.2030.56
40_V59_V1.1870.55
34_E52_S1.1830.54
101_R117_Q1.1700.54
97_R121_F1.1670.53
22_L25_L1.1600.53
57_T120_Q1.1600.53
50_V77_T1.1520.52
102_Y111_Q1.1470.52
16_E133_G1.1320.51
54_R90_C1.1180.50
105_P115_K1.1140.50
23_R27_P1.1130.50
21_Q127_R1.1100.50
116_H136_A1.0960.49
116_H120_Q1.0950.49
102_Y115_K1.0720.47
20_S80_L1.0500.46
61_I92_S1.0450.46
19_F82_H1.0430.45
11_M76_M1.0400.45
91_S120_Q1.0360.45
50_V60_T1.0220.44
15_C53_T0.9990.43
87_A105_P0.9930.42
87_A102_Y0.9890.42
102_Y114_E0.9790.41
106_N113_D0.9780.41
36_V130_L0.9670.41
63_Q125_W0.9640.40
89_V121_F0.9520.40
109_L114_E0.9520.40
17_M21_Q0.9360.39
7_D112_R0.9310.38
79_R98_F0.9200.38
19_F32_P0.9140.37
59_V68_I0.9100.37
89_V118_I0.9100.37
22_L59_V0.9060.37
45_Y63_Q0.9040.37
100_A121_F0.9010.37
55_Y124_D0.8960.36
85_M107_K0.8910.36
24_R64_T0.8890.36
61_I77_T0.8840.36
91_S103_D0.8800.35
109_L113_D0.8760.35
35_T48_T0.8760.35
98_F118_I0.8690.35
6_P11_M0.8640.34
100_A105_P0.8620.34
128_Y132_H0.8590.34
86_V124_D0.8530.34
9_P87_A0.8520.34
59_V131_A0.8510.34
80_L99_K0.8480.33
6_P97_R0.8430.33
106_N110_H0.8430.33
6_P129_C0.8350.33
12_M53_T0.8270.32
17_M76_M0.8230.32
44_Q62_E0.8210.32
8_F40_V0.8180.32
54_R61_I0.8130.31
41_A97_R0.7910.30
12_M103_D0.7890.30
125_W128_Y0.7860.30
104_Y115_K0.7850.30
55_Y60_T0.7790.30
16_E57_T0.7730.29
40_V102_Y0.7710.29
114_E124_D0.7690.29
8_F114_E0.7680.29
48_T60_T0.7620.29
17_M38_Y0.7480.28
24_R70_Y0.7410.28
35_T41_A0.7410.28
27_P55_Y0.7400.27
118_I129_C0.7330.27
45_Y74_P0.7310.27
70_Y96_F0.7210.26
22_L120_Q0.7190.26
71_W90_C0.7100.26
34_E117_Q0.7020.26
30_D72_S0.7020.26
105_P114_E0.7010.25
107_K135_M0.6990.25
105_P113_D0.6980.25
29_N33_G0.6980.25
47_L68_I0.6810.25
115_K118_I0.6770.24
41_A44_Q0.6770.24
60_T90_C0.6770.24
84_A88_E0.6710.24
74_P125_W0.6710.24
95_I110_H0.6680.24
90_C95_I0.6580.23
74_P128_Y0.6580.23
95_I118_I0.6540.23
53_T79_R0.6500.23
49_I52_S0.6480.23
51_E130_L0.6480.23
31_A36_V0.6440.23
106_N111_Q0.6380.23
65_A136_A0.6380.23
39_Q66_P0.6370.22
7_D59_V0.6330.22
45_Y52_S0.6330.22
32_P36_V0.6280.22
46_R65_A0.6270.22
39_Q44_Q0.6240.22
84_A126_L0.6240.22
22_L60_T0.6210.22
88_E126_L0.6200.22
93_Q101_R0.6190.22
56_T83_D0.6100.21
36_V132_H0.6070.21
54_R101_R0.6020.21
65_A75_S0.6010.21
52_S57_T0.6010.21
52_S64_T0.5990.21
55_Y126_L0.5960.21
33_G117_Q0.5950.21
13_R38_Y0.5940.21
29_N96_F0.5930.21
27_P116_H0.5870.20
47_L96_F0.5770.20
31_A99_K0.5750.20
73_L99_K0.5740.20
79_R88_E0.5700.20
21_Q123_A0.5680.19
14_L128_Y0.5650.19
74_P112_R0.5640.19
13_R17_M0.5620.19
29_N34_E0.5600.19
9_P37_S0.5570.19
19_F108_K0.5570.19
9_P15_C0.5560.19
69_S85_M0.5560.19
30_D49_I0.5490.19
75_S116_H0.5480.19
81_Y114_E0.5460.19
98_F124_D0.5430.18
89_V105_P0.5430.18
8_F128_Y0.5380.18
29_N116_H0.5330.18
94_Q120_Q0.5320.18
78_V122_L0.5320.18
11_M116_H0.5320.18
11_M70_Y0.5180.18
6_P91_S0.5160.17
59_V99_K0.5140.17
38_Y134_A0.5030.17
8_F15_C0.5000.17
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4owtA 1 0.8929 9.8 0.954 Contact Map
4miwA 1 0.4143 8.8 0.955 Contact Map
4i1tA 2 0.4143 6.2 0.958 Contact Map
2fmmE 2 0.6357 5.5 0.959 Contact Map
1j5sA 3 0.55 4.8 0.96 Contact Map
3jsbA 2 0.5714 3.8 0.962 Contact Map
4by6A 1 0.1929 3.6 0.963 Contact Map
1y08A 1 0.3357 3 0.964 Contact Map
4b6iA 2 0.2429 2.8 0.965 Contact Map
4n78F 1 0.8857 2.6 0.965 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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