GREMLIN Database
YGIN - Probable quinol monooxygenase YgiN
UniProt: P0ADU2 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG12657
Length: 104 (100)
Sequences: 121 (80)
Seq/√Len: 8.0

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
28_V42_P3.9640.97
39_G65_Q2.7250.82
35_E67_E2.6820.81
35_E63_I2.1910.65
44_V63_I2.1520.63
17_R21_L2.0900.61
92_V95_M1.9260.55
84_Y95_M1.8710.52
54_S88_V1.7680.48
27_I30_T1.7440.47
24_F53_Q1.7180.46
5_I19_A1.7050.46
10_T20_V1.6820.45
79_P102_P1.6510.43
18_Q22_D1.5600.40
82_K85_S1.5320.39
7_E62_M1.5280.38
84_Y88_V1.5090.38
3_T7_E1.4680.36
8_I53_Q1.4480.35
32_L62_M1.4420.35
3_T62_M1.4380.35
17_R89_K1.4370.35
24_F74_A1.4000.34
33_K94_E1.3810.33
65_Q90_G1.3260.31
12_P93_L1.3160.31
14_Q19_A1.3000.30
26_K33_K1.2940.30
62_M71_H1.2930.30
78_T102_P1.2800.29
87_A90_G1.2480.28
14_Q91_D1.2460.28
14_Q22_D1.2330.28
66_W72_L1.2330.28
49_G61_V1.2300.28
2_L46_C1.2280.28
49_G84_Y1.2230.27
2_L39_G1.2230.27
23_Q86_E1.2120.27
30_T33_K1.2070.27
59_S92_V1.1880.26
19_A91_D1.1870.26
11_R57_P1.1820.26
51_S54_S1.1790.26
2_L87_A1.1710.26
43_M62_M1.1610.26
79_P83_A1.1570.25
47_A90_G1.1500.25
27_I88_V1.1440.25
20_V97_I1.1410.25
7_E56_A1.1350.25
33_K67_E1.1330.25
32_L71_H1.1320.25
10_T58_D1.1220.24
1_M6_A1.0900.23
11_R35_E1.0360.22
7_E98_R1.0290.22
22_D25_A1.0190.21
44_V87_A1.0140.21
28_V84_Y1.0070.21
38_H60_I1.0030.21
93_L96_N1.0030.21
28_V94_E0.9950.21
51_S69_I0.9330.19
61_V83_A0.9050.18
24_F61_V0.8980.18
13_G80_H0.8910.18
12_P29_P0.8830.18
83_A86_E0.8790.18
82_K98_R0.8620.17
25_A33_K0.8510.17
25_A71_H0.8390.17
59_S88_V0.8300.17
49_G73_E0.8210.16
69_I88_V0.8190.16
50_V90_G0.8110.16
2_L30_T0.8090.16
61_V74_A0.8060.16
63_I88_V0.8040.16
44_V65_Q0.7870.16
10_T93_L0.7830.16
18_Q99_I0.7800.15
18_Q90_G0.7740.15
14_Q88_V0.7730.15
42_P76_L0.7720.15
32_L43_M0.7660.15
67_E86_E0.7650.15
33_K86_E0.7630.15
8_I17_R0.7610.15
42_P86_E0.7520.15
25_A79_P0.7480.15
85_S88_V0.7450.15
20_V59_S0.7420.15
39_G43_M0.7360.15
70_A74_A0.7360.15
77_Q85_S0.7330.15
53_Q99_I0.7260.14
25_A48_A0.7140.14
26_K67_E0.7130.14
88_V94_E0.7120.14
20_V98_R0.7090.14
88_V95_M0.7040.14
4_V13_G0.7010.14
13_G17_R0.6800.13
48_A76_L0.6760.13
4_V63_I0.6680.13
14_Q43_M0.6560.13
12_P17_R0.6480.13
27_I76_L0.6420.13
22_D38_H0.6420.13
30_T94_E0.6410.13
5_I74_A0.6400.13
69_I78_T0.6390.13
17_R33_K0.6380.13
9_R71_H0.6360.13
84_Y89_K0.6320.13
47_A86_E0.6270.12
11_R19_A0.6220.12
2_L98_R0.6120.12
18_Q39_G0.6080.12
12_P71_H0.6020.12
53_Q76_L0.6020.12
32_L92_V0.6020.12
48_A54_S0.5960.12
92_V97_I0.5950.12
42_P82_K0.5920.12
28_V82_K0.5880.12
28_V58_D0.5880.12
27_I91_D0.5870.12
47_A55_M0.5830.12
71_H84_Y0.5830.12
35_E86_E0.5680.11
43_M63_I0.5650.11
48_A51_S0.5540.11
69_I76_L0.5530.11
69_I99_I0.5500.11
41_A96_N0.5420.11
28_V68_S0.5380.11
55_M97_I0.5300.11
11_R90_G0.5250.11
57_P73_E0.5250.11
23_Q46_C0.5230.11
2_L20_V0.5230.11
24_F78_T0.5180.11
6_A13_G0.5160.11
59_S97_I0.5140.11
13_G74_A0.5110.11
54_S87_A0.5010.10
52_F73_E0.5000.10
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1tuvA 2 0.9712 99.9 0.532 Contact Map
3mcsA 1 0.9038 99.8 0.585 Contact Map
3f44A 1 0.9038 99.7 0.607 Contact Map
1q8bA 2 0.875 99.7 0.611 Contact Map
2omoA 2 0.9038 99.7 0.613 Contact Map
2gffA 2 0.9038 99.7 0.613 Contact Map
3kkfA 3 0.9038 99.7 0.619 Contact Map
2fb0A 2 0.875 99.7 0.62 Contact Map
3e8oA 2 0.9038 99.7 0.623 Contact Map
2bbeA 3 0.9038 99.7 0.624 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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