GREMLIN Database
YIBL - Uncharacterized protein YibL
UniProt: P0ADK8 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG11964
Length: 120 (116)
Sequences: 115 (57)
Seq/√Len: 5.3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
75_A111_E4.8540.97
84_M96_V3.0400.74
63_E67_L2.8930.70
83_D86_K2.6920.64
52_L76_I2.5960.61
66_K100_M2.5870.61
34_K37_E2.1410.46
22_Q30_E2.0850.45
29_V38_L1.9370.40
96_V110_Q1.8410.37
15_R21_H1.8120.36
96_V112_M1.8000.35
40_K92_R1.7600.34
43_A75_A1.7570.34
102_A105_R1.7310.33
16_L42_K1.6750.32
29_V47_A1.6610.31
10_K13_S1.6380.31
24_A34_K1.5940.29
102_A108_G1.5670.29
5_E76_I1.5460.28
16_L106_E1.5250.27
84_M110_Q1.5090.27
14_D45_L1.4710.26
20_R54_E1.4480.25
53_R83_D1.4420.25
67_L70_M1.4260.25
52_L67_L1.3830.24
13_S76_I1.3700.24
26_L38_L1.3660.23
16_L49_I1.3620.23
14_D60_L1.3420.23
96_V103_L1.3260.23
69_K73_Q1.3140.22
102_A107_M1.3110.22
12_L49_I1.3100.22
23_Q35_Y1.2890.22
8_E84_M1.2610.21
38_L47_A1.2580.21
90_S94_L1.2420.21
25_D38_L1.2410.21
61_S102_A1.2370.20
18_A49_I1.2170.20
55_V105_R1.2170.20
63_E73_Q1.2000.20
53_R69_K1.1830.19
42_K84_M1.1770.19
54_E57_S1.1700.19
26_L29_V1.1630.19
84_M103_L1.1420.19
65_Q92_R1.1130.18
23_Q26_L1.0750.17
78_K118_T1.0720.17
10_K23_Q1.0630.17
33_D92_R1.0510.17
64_A67_L1.0400.17
14_D49_I1.0210.16
61_S70_M1.0190.16
17_D111_E1.0080.16
64_A102_A1.0050.16
20_R73_Q1.0030.16
16_L30_E0.9990.16
84_M115_F0.9960.16
26_L53_R0.9860.16
51_R54_E0.9720.15
8_E18_A0.9670.15
36_A40_K0.9640.15
46_E79_K0.9490.15
59_K70_M0.9480.15
21_H67_L0.9460.15
61_S106_E0.9390.15
114_G120_F0.9340.15
113_T120_F0.9340.15
18_A92_R0.9310.15
10_K17_D0.9190.14
7_N44_T0.9040.14
15_R47_A0.9010.14
21_H50_A0.8950.14
10_K26_L0.8920.14
54_E119_A0.8860.14
61_S92_R0.8810.14
8_E44_T0.8800.14
25_D47_A0.8740.14
32_A66_K0.8470.13
16_L109_L0.8470.13
12_L62_K0.8420.13
61_S64_A0.8390.13
31_A95_V0.8330.13
34_K38_L0.8230.13
43_A111_E0.8120.13
45_L92_R0.8080.13
22_Q38_L0.8050.13
5_E21_H0.8040.13
15_R54_E0.7950.12
39_E75_A0.7920.12
6_K49_I0.7790.12
26_L37_E0.7780.12
31_A83_D0.7660.12
55_V58_Q0.7630.12
25_D37_E0.7570.12
21_H63_E0.7560.12
78_K84_M0.7560.12
43_A46_E0.7550.12
61_S65_Q0.7540.12
23_Q29_V0.7350.12
9_I64_A0.7300.12
9_I49_I0.7280.12
33_D43_A0.7270.12
18_A51_R0.7250.11
70_M108_G0.7100.11
58_Q108_G0.7070.11
63_E69_K0.7050.11
22_Q29_V0.7050.11
86_K90_S0.7000.11
7_N12_L0.6960.11
47_A92_R0.6910.11
10_K48_E0.6900.11
69_K94_L0.6860.11
27_S70_M0.6700.11
84_M112_M0.6700.11
53_R112_M0.6600.11
36_A39_E0.6570.11
13_S60_L0.6560.11
25_D29_V0.6550.11
12_L60_L0.6550.11
28_L59_K0.6510.11
64_A108_G0.6470.10
103_L112_M0.6420.10
53_R86_K0.6380.10
27_S45_L0.6330.10
50_A115_F0.6310.10
56_H59_K0.6250.10
88_K93_G0.6240.10
71_P75_A0.6150.10
63_E112_M0.6120.10
5_E51_R0.6080.10
66_K69_K0.6050.10
24_A46_E0.6030.10
22_Q31_A0.6010.10
13_S50_A0.5980.10
88_K91_V0.5970.10
45_L97_V0.5820.10
56_H75_A0.5740.10
29_V34_K0.5710.10
73_Q116_S0.5660.10
54_E65_Q0.5640.09
25_D70_M0.5640.09
13_S59_K0.5610.09
44_T55_V0.5580.09
67_L76_I0.5550.09
84_M106_E0.5550.09
8_E22_Q0.5520.09
13_S18_A0.5500.09
24_A30_E0.5490.09
49_I60_L0.5490.09
18_A44_T0.5480.09
20_R109_L0.5430.09
87_L93_G0.5410.09
37_E53_R0.5360.09
36_A92_R0.5330.09
59_K79_K0.5320.09
13_S20_R0.5280.09
28_L35_Y0.5230.09
60_L65_Q0.5180.09
105_R108_G0.5160.09
116_S120_F0.5160.09
113_T116_S0.5160.09
40_K65_Q0.5120.09
14_D32_A0.5100.09
25_D31_A0.5030.09
62_K71_P0.5020.09
9_I18_A0.5000.09
100_M106_E0.5000.09
48_E76_I0.5000.09
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2lf0A 1 1 100 0.016 Contact Map
1gaxA 1 0.4417 63.8 0.93 Contact Map
2dfsA 2 0.6583 58.4 0.933 Contact Map
4rsiB 1 0.4167 49.3 0.936 Contact Map
3ghgA 2 0.5333 44.9 0.938 Contact Map
3mq9A 4 0.7167 42.9 0.938 Contact Map
1i84S 2 0 42.7 0.938 Contact Map
3dmqA 1 0.7333 40.4 0.939 Contact Map
4rsiA 1 0.2167 34.8 0.942 Contact Map
3j9tb 1 0.75 32.1 0.943 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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