GREMLIN Database
YJJB - UPF0442 protein YjjB
UniProt: P0ADD2 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG11215
Length: 157 (134)
Sequences: 3804 (2669)
Seq/√Len: 230.5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
105_A129_F4.3831.00
18_A43_S4.0561.00
18_A39_A3.5511.00
48_S69_L3.3101.00
21_A42_G2.9051.00
22_V39_A2.6601.00
45_G70_V2.4481.00
14_M43_S2.3321.00
113_S124_T2.2181.00
105_A132_A2.1011.00
71_G146_P1.9971.00
68_M146_P1.9851.00
126_L130_L1.9031.00
13_D46_H1.8861.00
93_V139_L1.8711.00
17_A46_H1.8681.00
41_L73_I1.8441.00
52_L57_L1.8361.00
45_G95_P1.7971.00
63_T135_I1.7951.00
128_N131_T1.7431.00
142_G146_P1.7421.00
25_A35_L1.7121.00
109_A125_L1.7071.00
52_L65_M1.5901.00
37_W77_W1.5871.00
9_A12_Q1.5731.00
20_P24_F1.5011.00
36_R40_L1.4991.00
64_F138_A1.4911.00
22_V35_L1.4831.00
47_G51_I1.4511.00
31_P34_A1.4481.00
108_S128_N1.4361.00
122_M125_L1.4301.00
12_Q16_L1.4281.00
100_I104_T1.4151.00
11_A15_I1.4011.00
25_A30_V1.3611.00
102_A132_A1.3321.00
78_S82_L1.2921.00
14_M47_G1.2571.00
139_L142_G1.2331.00
124_T127_T1.2291.00
51_I55_S1.2101.00
15_I19_I1.1821.00
108_S112_I1.1551.00
108_S113_S1.1521.00
29_N91_A1.1441.00
10_L50_M1.1421.00
75_I146_P1.1351.00
87_V91_A1.0941.00
102_A136_V1.0941.00
24_F27_V1.0901.00
60_E138_A1.0861.00
41_L77_W1.0751.00
83_A88_F1.0701.00
68_M72_T1.0691.00
28_F94_I1.0671.00
133_S137_G1.0301.00
34_A83_A1.0201.00
57_L61_W1.0171.00
126_L129_F0.9881.00
30_V38_C0.9791.00
77_W81_Y0.9751.00
49_R53_M0.9741.00
25_A91_A0.9681.00
97_F139_L0.9651.00
41_L92_A0.9601.00
21_A94_I0.9561.00
38_C91_A0.9531.00
104_T107_I0.9521.00
13_D50_M0.9471.00
51_I54_T0.9471.00
70_V95_P0.9321.00
138_A142_G0.9271.00
74_G89_T0.9261.00
104_T141_I0.9231.00
84_H103_Y0.9111.00
42_G50_M0.9000.99
30_V34_A0.8950.99
70_V92_A0.8900.99
76_Q80_W0.8840.99
102_A107_I0.8800.99
123_I127_T0.8750.99
80_W83_A0.8750.99
77_W88_F0.8730.99
10_L51_I0.8730.99
105_A125_L0.8700.99
59_I135_I0.8640.99
19_I23_G0.8600.99
104_T128_N0.8540.99
127_T131_T0.8540.99
18_A36_R0.8500.99
95_P143_L0.8490.99
53_M62_S0.8440.99
112_I122_M0.8300.99
58_N61_W0.8260.99
20_P23_G0.8250.99
78_S88_F0.8120.99
54_T133_S0.8100.99
44_I69_L0.8040.99
94_I106_M0.7960.99
74_G88_F0.7900.99
106_M133_S0.7770.98
32_V35_L0.7750.98
72_T150_L0.7730.98
85_P90_V0.7720.98
71_G74_G0.7630.98
44_I73_I0.7590.98
64_F141_I0.7550.98
94_I97_F0.7500.98
46_H49_R0.7480.98
58_N63_T0.7420.98
17_A42_G0.7400.98
94_I107_I0.7280.98
17_A132_A0.7220.98
131_T135_I0.7190.97
52_L56_G0.7110.97
107_I111_K0.7090.97
15_I55_S0.7070.97
43_S47_G0.7030.97
136_V140_S0.7010.97
67_S139_L0.6960.97
18_A42_G0.6950.97
132_A144_S0.6880.97
23_G26_M0.6880.97
63_T109_A0.6850.97
79_R82_L0.6810.96
15_I39_A0.6770.96
13_D53_M0.6690.96
44_I55_S0.6650.96
20_P94_I0.6620.96
17_A43_S0.6580.96
64_F68_M0.6570.96
100_I141_I0.6490.95
97_F143_L0.6450.95
28_F104_T0.6400.95
125_L129_F0.6390.95
64_F142_G0.6390.95
140_S147_G0.6320.95
50_M54_T0.6300.95
129_F132_A0.6290.95
134_S144_S0.6280.94
89_T143_L0.6260.94
64_F145_I0.6200.94
71_G92_A0.6170.94
31_P83_A0.6150.94
37_W81_Y0.6140.94
33_R83_A0.6120.94
10_L40_L0.6110.94
14_M50_M0.6100.94
48_S66_A0.6030.93
109_A129_F0.6030.93
48_S52_L0.5970.93
60_E127_T0.5950.93
34_A125_L0.5940.93
28_F143_L0.5940.93
53_M57_L0.5910.93
48_S51_I0.5890.92
49_R136_V0.5890.92
84_H97_F0.5870.92
28_F142_G0.5840.92
36_R39_A0.5840.92
103_Y132_A0.5800.92
30_V93_V0.5720.91
16_L20_P0.5700.91
74_G85_P0.5630.91
131_T134_S0.5620.91
11_A47_G0.5590.90
141_I144_S0.5530.90
71_G143_L0.5460.89
26_M35_L0.5450.89
108_S124_T0.5430.89
77_W80_W0.5390.89
36_R76_Q0.5380.89
16_L19_I0.5370.88
45_G97_F0.5360.88
146_P150_L0.5360.88
45_G66_A0.5350.88
22_V26_M0.5330.88
103_Y107_I0.5290.88
11_A33_R0.5290.88
75_I79_R0.5260.87
71_G89_T0.5260.87
98_P136_V0.5250.87
34_A67_S0.5230.87
21_A101_S0.5220.87
38_C41_L0.5200.87
27_V97_F0.5190.87
111_K127_T0.5190.87
30_V36_R0.5170.87
78_S145_I0.5160.86
75_I150_L0.5130.86
38_C107_I0.5130.86
28_F144_S0.5110.86
108_S111_K0.5080.86
101_S132_A0.5070.86
81_Y88_F0.5050.85
16_L67_S0.5020.85
62_S95_P0.5000.85
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2b2hA 3 0.8217 9.9 0.917 Contact Map
2nwlA 3 0.879 9.4 0.918 Contact Map
4tq3A 1 0.9745 8.5 0.92 Contact Map
1zcdA 1 0.5159 8.4 0.92 Contact Map
4od4A 1 0.9682 7.6 0.921 Contact Map
1ciiA 1 0.3822 5.2 0.928 Contact Map
1u7gA 3 0.7898 5 0.928 Contact Map
4czbA 2 0.5669 4.5 0.93 Contact Map
4pypA 1 0.9427 4.1 0.931 Contact Map
4qndA 2 0.535 3.6 0.933 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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