BRNQ - ECOLI - GREMLIN Contacts

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BRNQ - Branched-chain amino acid transport system 2 carrier protein

UniProt:	P0AD99	Sequences: MTHQLRSRDIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAKVGGGVDSLSTPIGKVAGVLLATVCYLAVGPLFATPRTATVSFEVGIAPLTGDSALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAARSRGVTEARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVPLSYRTLVFILGGFSMVVSNLGLSQLIQISVPVLTAIYPPCIALVVLSFTRSWWHNSSRVIAPPMFISLLFGILDGIKASAFSDILPSWAQRLPLAEQGLAWLMPTVVMVVLAIIWDRAAGRQVTSSAH	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG12168
Length:	439 (425)
Sequences:	1604 (1191)
Seq/√Len:	57.8

ECOLI - BRNQ
BACSU - BRAB BRNQ

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
133_V	299_T	5.407	1.00
377_I	419_M	4.900	1.00
378_S	416_T	4.347	1.00
127_L	326_M	4.250	1.00
134_I	319_F	4.193	1.00
374_P	420_V	3.946	1.00
188_N	192_N	3.933	1.00
226_R	230_W	3.822	1.00
133_V	295_A	3.754	1.00
419_M	423_A	3.643	1.00
324_F	328_V	3.585	1.00
39_E	177_A	3.359	1.00
201_G	205_F	3.174	1.00
59_T	202_A	2.889	1.00
57_V	236_G	2.866	1.00
165_A	169_W	2.859	1.00
9_D	216_R	2.723	1.00
262_N	334_S	2.656	1.00
233_L	237_V	2.565	1.00
303_A	317_L	2.514	1.00
41_V	247_F	2.496	1.00
81_A	375_M	2.468	1.00
19_A	147_V	2.422	1.00
154_L	289_I	2.416	1.00
299_T	318_V	2.385	1.00
14_G	234_M	2.382	1.00
103_A	126_S	2.357	1.00
353_A	378_S	2.334	1.00
126_S	330_N	2.275	1.00
98_A	200_L	2.264	1.00
85_L	351_C	2.253	1.00
313_S	316_T	2.242	1.00
59_T	355_V	2.241	1.00
353_A	416_T	2.198	1.00
373_P	377_I	2.195	1.00
123_F	127_L	2.164	1.00
164_V	168_V	2.162	1.00
136_V	296_V	2.120	1.00
134_I	138_L	2.111	1.00
107_F	121_P	2.017	1.00
299_T	322_G	1.990	1.00
312_L	316_T	1.970	1.00
133_V	322_G	1.967	1.00
220_E	223_L	1.937	1.00
52_A	56_P	1.930	1.00
88_V	347_I	1.929	1.00
15_F	152_A	1.913	1.00
22_V	27_I	1.910	1.00
132_I	292_L	1.872	1.00
136_V	144_L	1.868	1.00
213_A	224_L	1.841	1.00
77_I	81_A	1.822	0.99
134_I	318_V	1.800	0.99
414_M	418_V	1.786	0.99
331_L	335_Q	1.776	0.99
103_A	131_A	1.763	0.99
61_V	229_V	1.752	0.99
335_Q	338_Q	1.752	0.99
261_A	265_A	1.751	0.99
102_T	295_A	1.749	0.99
160_V	164_V	1.745	0.99
45_A	247_F	1.740	0.99
37_A	44_A	1.725	0.99
368_S	372_A	1.719	0.99
136_V	292_L	1.703	0.99
103_A	130_F	1.700	0.99
128_V	132_I	1.669	0.99
222_R	226_R	1.667	0.99
199_T	355_V	1.625	0.99
83_V	87_T	1.604	0.99
373_P	423_A	1.604	0.99
97_F	343_V	1.604	0.99
416_T	419_M	1.589	0.99
163_S	245_A	1.586	0.99
155_K	286_L	1.585	0.98
156_I	242_L	1.580	0.98
170_P	252_D	1.567	0.98
292_L	296_V	1.557	0.98
248_R	252_D	1.548	0.98
312_L	317_L	1.536	0.98
377_I	423_A	1.529	0.98
6_R	9_D	1.519	0.98
302_C	321_L	1.518	0.98
158_A	286_L	1.515	0.98
134_I	322_G	1.506	0.98
104_T	122_L	1.506	0.98
59_T	199_T	1.506	0.98
377_I	380_L	1.502	0.98
135_L	146_T	1.496	0.98
137_S	300_C	1.487	0.98
120_L	124_I	1.479	0.98
174_I	251_S	1.476	0.98
350_P	379_L	1.473	0.98
45_A	244_L	1.472	0.98
203_M	351_C	1.466	0.97
113_P	116_G	1.464	0.97
180_A	188_N	1.455	0.97
103_A	133_V	1.453	0.97
13_L	213_A	1.448	0.97
346_A	383_I	1.446	0.97
307_A	313_S	1.445	0.97
31_P	246_L	1.444	0.97
327_V	331_L	1.423	0.97
31_P	266_I	1.417	0.97
155_K	293_V	1.410	0.97
17_T	60_V	1.402	0.97
303_A	318_V	1.401	0.97
376_F	379_L	1.398	0.97
43_T	46_F	1.396	0.97
341_V	345_T	1.391	0.97
264_A	333_L	1.389	0.97
385_D	411_A	1.387	0.96
97_F	337_I	1.369	0.96
125_Y	288_F	1.367	0.96
238_G	242_L	1.365	0.96
424_I	428_R	1.365	0.96
282_L	286_L	1.365	0.96
76_P	361_R	1.363	0.96
93_V	98_A	1.361	0.96
122_L	126_S	1.357	0.96
46_F	186_F	1.352	0.96
350_P	375_M	1.346	0.96
91_L	96_L	1.338	0.96
166_A	249_L	1.325	0.95
186_F	190_F	1.324	0.95
357_L	370_V	1.317	0.95
260_S	266_I	1.299	0.95
378_S	382_G	1.297	0.95
405_L	408_Q	1.292	0.95
373_P	419_M	1.280	0.94
364_W	370_V	1.279	0.94
414_M	421_V	1.276	0.94
131_A	135_L	1.276	0.94
124_I	128_V	1.275	0.94
299_T	321_L	1.272	0.94
92_A	97_F	1.271	0.94
372_A	376_F	1.271	0.94
157_I	161_I	1.270	0.94
73_L	358_S	1.257	0.94
82_G	162_L	1.254	0.94
373_P	426_W	1.252	0.94
70_V	86_A	1.252	0.94
361_R	371_I	1.244	0.94
165_A	275_F	1.237	0.93
98_A	306_F	1.236	0.93
99_T	325_S	1.230	0.93
49_L	240_T	1.225	0.93
369_R	373_P	1.221	0.93
361_R	366_N	1.220	0.93
20_L	147_V	1.219	0.93
20_L	336_L	1.218	0.93
20_L	98_A	1.218	0.93
266_I	270_Y	1.207	0.93
122_L	330_N	1.203	0.92
170_P	253_S	1.201	0.92
80_V	84_L	1.198	0.92
317_L	321_L	1.192	0.92
19_A	293_V	1.174	0.91
49_L	53_V	1.169	0.91
81_A	350_P	1.168	0.91
353_A	375_M	1.162	0.91
54_G	95_P	1.156	0.91
32_M	36_Q	1.148	0.91
15_F	19_A	1.148	0.91
195_L	336_L	1.145	0.90
346_A	386_G	1.136	0.90
75_T	82_G	1.126	0.90
310_V	317_L	1.124	0.90
123_F	326_M	1.123	0.90
326_M	329_S	1.108	0.89
126_S	329_S	1.107	0.89
373_P	422_L	1.106	0.89
289_I	293_V	1.098	0.88
47_G	186_F	1.095	0.88
417_V	430_A	1.091	0.88
319_F	323_G	1.084	0.88
235_A	239_L	1.078	0.88
63_L	206_G	1.076	0.87
16_M	20_L	1.070	0.87
187_S	410_L	1.069	0.87
222_R	418_V	1.064	0.87
426_W	429_A	1.062	0.87
377_I	381_F	1.061	0.87
49_L	159_L	1.057	0.86
20_L	105_V	1.052	0.86
41_V	251_S	1.048	0.86
152_A	155_K	1.045	0.86
91_L	306_F	1.040	0.86
367_S	427_D	1.029	0.85
51_T	56_P	1.027	0.85
53_V	240_T	1.021	0.85
195_L	382_G	1.017	0.84
31_P	267_L	1.012	0.84
40_H	43_T	1.009	0.84
373_P	420_V	1.008	0.84
55_L	352_I	1.003	0.83
425_I	429_A	1.002	0.83
106_S	288_F	1.002	0.83
303_A	339_I	1.001	0.83
96_L	339_I	0.997	0.83
98_A	205_F	0.996	0.83
385_D	388_K	0.994	0.83
58_L	356_V	0.992	0.83
62_A	358_S	0.991	0.83
123_F	330_N	0.983	0.82
346_A	350_P	0.980	0.82
115_T	121_P	0.980	0.82
19_A	155_K	0.978	0.82
63_L	210_V	0.978	0.82
307_A	312_L	0.978	0.82
20_L	205_F	0.977	0.82
139_Y	146_T	0.973	0.82
109_V	206_G	0.971	0.81
12_A	19_A	0.965	0.81
10_I	230_W	0.963	0.81
298_L	340_S	0.961	0.81
377_I	416_T	0.954	0.80
10_I	238_G	0.952	0.80
92_A	347_I	0.951	0.80
353_A	374_P	0.947	0.80
107_F	125_Y	0.939	0.79
62_A	66_V	0.938	0.79
381_F	403_L	0.937	0.79
211_N	214_R	0.934	0.79
21_F	60_V	0.932	0.79
89_C	200_L	0.928	0.78
22_V	156_I	0.927	0.78
162_L	286_L	0.926	0.78
20_L	337_I	0.926	0.78
86_A	305_F	0.925	0.78
106_S	125_Y	0.924	0.78
205_F	209_I	0.923	0.78
63_L	67_G	0.922	0.78
17_T	22_V	0.922	0.78
263_G	333_L	0.920	0.78
85_L	89_C	0.917	0.78
380_L	422_L	0.916	0.77
272_Q	280_S	0.916	0.77
174_I	252_D	0.910	0.77
239_L	293_V	0.910	0.77
386_G	390_S	0.908	0.77
79_K	190_F	0.908	0.77
155_K	239_L	0.906	0.77
12_A	16_M	0.906	0.77
50_I	186_F	0.904	0.77
63_L	73_L	0.902	0.76
167_I	248_R	0.901	0.76
27_I	286_L	0.901	0.76
200_L	347_I	0.897	0.76
132_I	288_F	0.896	0.76
95_P	344_L	0.896	0.76
394_D	398_S	0.893	0.76
155_K	290_A	0.887	0.75
145_D	216_R	0.886	0.75
8_R	12_A	0.885	0.75
401_Q	417_V	0.885	0.75
261_A	334_S	0.881	0.75
158_A	285_A	0.881	0.75
382_G	386_G	0.880	0.75
144_L	212_A	0.879	0.74
16_M	263_G	0.879	0.74
109_V	287_I	0.879	0.74
102_T	106_S	0.878	0.74
99_T	295_A	0.874	0.74
80_V	296_V	0.873	0.74
169_W	274_T	0.873	0.74
224_L	228_T	0.872	0.74
42_W	46_F	0.868	0.74
93_V	201_G	0.865	0.73
175_S	254_A	0.864	0.73
71_D	308_Q	0.864	0.73
58_L	359_F	0.860	0.73
152_A	293_V	0.858	0.73
44_A	192_N	0.855	0.72
97_F	340_S	0.853	0.72
57_V	264_A	0.852	0.72
125_Y	287_I	0.851	0.72
89_C	347_I	0.850	0.72
61_V	225_T	0.847	0.72
111_I	114_L	0.844	0.71
151_L	294_T	0.841	0.71
232_G	266_I	0.841	0.71
234_M	352_I	0.840	0.71
157_I	421_V	0.839	0.71
77_I	375_M	0.839	0.71
96_L	328_V	0.836	0.71
385_D	389_A	0.832	0.70
144_L	293_V	0.829	0.70
204_V	239_L	0.829	0.70
168_V	171_A	0.828	0.70
81_A	85_L	0.827	0.70
76_P	358_S	0.827	0.70
116_G	350_P	0.826	0.70
323_G	327_V	0.822	0.69
411_A	421_V	0.821	0.69
155_K	305_F	0.819	0.69
102_T	321_L	0.816	0.69
395_I	398_S	0.815	0.69
224_L	231_A	0.814	0.69
386_G	389_A	0.813	0.69
9_D	14_G	0.812	0.68
75_T	79_K	0.808	0.68
52_A	203_M	0.808	0.68
21_F	202_A	0.806	0.68
162_L	271_V	0.803	0.68
95_P	298_L	0.803	0.68
235_A	289_I	0.801	0.67
142_K	145_D	0.800	0.67
124_I	421_V	0.800	0.67
142_K	146_T	0.791	0.66
68_G	72_S	0.788	0.66
144_L	155_K	0.787	0.66
55_L	110_G	0.787	0.66
167_I	245_A	0.782	0.66
181_Y	333_L	0.782	0.66
369_R	426_W	0.782	0.66
20_L	60_V	0.780	0.65
90_Y	204_V	0.780	0.65
385_D	406_A	0.779	0.65
10_I	234_M	0.776	0.65
143_L	242_L	0.776	0.65
102_T	325_S	0.775	0.65
87_T	309_Y	0.775	0.65
331_L	336_L	0.772	0.65
69_G	206_G	0.771	0.64
345_T	389_A	0.768	0.64
132_I	135_L	0.768	0.64
287_I	308_Q	0.763	0.64
204_V	301_A	0.762	0.64
69_G	308_Q	0.759	0.63
46_F	50_I	0.758	0.63
174_I	248_R	0.757	0.63
74_S	354_L	0.757	0.63
262_N	265_A	0.755	0.63
402_R	418_V	0.754	0.63
35_L	253_S	0.752	0.63
397_P	401_Q	0.752	0.63
183_N	187_S	0.750	0.62
120_L	164_V	0.750	0.62
95_P	99_T	0.749	0.62
70_V	89_C	0.747	0.62
293_V	305_F	0.747	0.62
19_A	195_L	0.747	0.62
19_A	239_L	0.747	0.62
18_F	22_V	0.745	0.62
19_A	236_G	0.745	0.62
109_V	268_H	0.745	0.62
271_V	275_F	0.745	0.62
239_L	305_F	0.745	0.62
369_R	372_A	0.745	0.62
121_P	124_I	0.745	0.62
218_V	223_L	0.739	0.61
20_L	97_F	0.737	0.61
140_P	304_E	0.733	0.61
139_Y	315_R	0.731	0.60
95_P	340_S	0.729	0.60
16_M	19_A	0.729	0.60
274_T	371_I	0.729	0.60
97_F	336_L	0.729	0.60
26_N	29_F	0.726	0.60
125_Y	163_S	0.726	0.60
87_T	306_F	0.725	0.60
323_G	421_V	0.725	0.60
119_A	123_F	0.723	0.59
105_V	328_V	0.721	0.59
104_T	245_A	0.720	0.59
237_V	240_T	0.720	0.59
186_F	192_N	0.719	0.59
108_E	112_A	0.718	0.59
340_S	346_A	0.717	0.59
22_V	238_G	0.717	0.59
305_F	309_Y	0.716	0.59
65_K	208_V	0.715	0.59
287_I	340_S	0.715	0.59
387_I	392_F	0.709	0.58
129_Y	286_L	0.708	0.58
357_L	371_I	0.708	0.58
25_G	29_F	0.706	0.58
61_V	232_G	0.705	0.58
147_V	347_I	0.703	0.57
182_Q	185_A	0.703	0.57
207_I	302_C	0.702	0.57
374_P	423_A	0.701	0.57
64_A	197_M	0.698	0.57
256_L	273_H	0.698	0.57
173_S	418_V	0.696	0.57
369_R	417_V	0.694	0.56
96_L	343_V	0.694	0.56
94_G	98_A	0.693	0.56
106_S	280_S	0.691	0.56
31_P	208_V	0.689	0.56
248_R	251_S	0.689	0.56
253_S	270_Y	0.689	0.56
323_G	326_M	0.689	0.56
379_L	383_I	0.687	0.56
144_L	147_V	0.685	0.55
369_R	387_I	0.684	0.55
345_T	386_G	0.683	0.55
155_K	289_I	0.682	0.55
227_Y	336_L	0.681	0.55
80_V	83_V	0.679	0.55
124_I	356_V	0.677	0.55
102_T	245_A	0.676	0.54
353_A	356_V	0.675	0.54
137_S	201_G	0.675	0.54
105_V	122_L	0.673	0.54
107_F	156_I	0.673	0.54
175_S	323_G	0.673	0.54
181_Y	263_G	0.672	0.54
171_A	252_D	0.671	0.54
14_G	238_G	0.670	0.54
89_C	236_G	0.666	0.53
405_L	410_L	0.665	0.53
129_Y	371_I	0.664	0.53
41_V	45_A	0.663	0.53
302_C	306_F	0.663	0.53
6_R	46_F	0.663	0.53
205_F	298_L	0.662	0.53
222_R	380_L	0.662	0.53
181_Y	185_A	0.661	0.53
264_A	406_A	0.660	0.53
33_V	104_T	0.655	0.52
69_G	72_S	0.655	0.52
90_Y	185_A	0.654	0.52
395_I	399_W	0.650	0.52
90_Y	297_G	0.649	0.51
361_R	364_W	0.648	0.51
21_F	26_N	0.648	0.51
27_I	324_F	0.647	0.51
49_L	55_L	0.646	0.51
64_A	232_G	0.646	0.51
102_T	130_F	0.645	0.51
93_V	303_A	0.644	0.51
184_A	326_M	0.644	0.51
261_A	296_V	0.642	0.51
313_S	320_I	0.639	0.50
98_A	102_T	0.638	0.50
98_A	298_L	0.638	0.50
286_L	336_L	0.637	0.50
199_T	345_T	0.635	0.50
398_S	401_Q	0.634	0.50
124_I	418_V	0.634	0.50
90_Y	263_G	0.633	0.50
170_P	217_G	0.632	0.50
108_E	262_N	0.631	0.49
261_A	266_I	0.630	0.49
243_Y	291_C	0.627	0.49
171_A	273_H	0.627	0.49
269_A	272_Q	0.626	0.49
19_A	51_T	0.626	0.49
406_A	411_A	0.626	0.49
369_R	418_V	0.625	0.49
67_G	72_S	0.625	0.49
133_V	292_L	0.624	0.49
320_I	383_I	0.622	0.48
393_S	413_L	0.621	0.48
320_I	373_P	0.620	0.48
312_L	320_I	0.620	0.48
391_A	396_L	0.619	0.48
10_I	227_Y	0.619	0.48
22_V	270_Y	0.618	0.48
52_A	236_G	0.617	0.48
163_S	214_R	0.614	0.48
417_V	420_V	0.614	0.48
33_V	247_F	0.614	0.48
70_V	204_V	0.611	0.47
319_F	426_W	0.611	0.47
357_L	374_P	0.610	0.47
59_T	238_G	0.610	0.47
152_A	156_I	0.609	0.47
77_I	270_Y	0.609	0.47
363_W	421_V	0.608	0.47
310_V	346_A	0.608	0.47
21_F	231_A	0.605	0.47
260_S	265_A	0.605	0.47
353_A	406_A	0.605	0.47
23_G	26_N	0.604	0.46
195_L	410_L	0.601	0.46
99_T	103_A	0.601	0.46
280_S	284_A	0.601	0.46
222_R	285_A	0.600	0.46
107_F	123_F	0.596	0.46
124_I	131_A	0.594	0.45
109_V	247_F	0.594	0.45
110_G	113_P	0.594	0.45
364_W	420_V	0.594	0.45
131_A	272_Q	0.593	0.45
403_L	416_T	0.593	0.45
307_A	317_L	0.592	0.45
37_A	285_A	0.592	0.45
290_A	296_V	0.591	0.45
90_Y	301_A	0.591	0.45
111_I	242_L	0.588	0.45
254_A	257_V	0.586	0.45
384_L	396_L	0.586	0.45
59_T	201_G	0.585	0.44
167_I	226_R	0.585	0.44
168_V	398_S	0.585	0.44
376_F	380_L	0.585	0.44
28_I	264_A	0.584	0.44
175_S	183_N	0.584	0.44
52_A	271_V	0.583	0.44
192_N	195_L	0.582	0.44
228_T	234_M	0.579	0.44
360_T	363_W	0.578	0.44
137_S	318_V	0.577	0.44
12_A	143_L	0.577	0.44
58_L	355_V	0.577	0.44
154_L	157_I	0.576	0.43
103_A	295_A	0.576	0.43
213_A	287_I	0.575	0.43
20_L	201_G	0.574	0.43
192_N	263_G	0.573	0.43
361_R	367_S	0.572	0.43
187_S	191_V	0.572	0.43
19_A	283_L	0.572	0.43
373_P	376_F	0.572	0.43
53_V	239_L	0.571	0.43
223_L	227_Y	0.571	0.43
13_L	17_T	0.570	0.43
218_V	245_A	0.569	0.43
67_G	73_L	0.568	0.43
162_L	337_I	0.568	0.43
362_S	365_H	0.568	0.43
265_A	269_A	0.567	0.42
72_S	75_T	0.567	0.42
390_S	393_S	0.567	0.42
84_L	323_G	0.567	0.42
76_P	371_I	0.565	0.42
96_L	324_F	0.563	0.42
403_L	411_A	0.563	0.42
22_V	33_V	0.563	0.42
52_A	206_G	0.562	0.42
52_A	65_K	0.562	0.42
94_G	298_L	0.561	0.42
15_F	195_L	0.558	0.41
129_Y	133_V	0.557	0.41
130_F	235_A	0.557	0.41
219_T	425_I	0.557	0.41
286_L	289_I	0.556	0.41
8_R	141_G	0.555	0.41
108_E	209_I	0.554	0.41
140_P	300_C	0.554	0.41
94_G	205_F	0.553	0.41
218_V	227_Y	0.553	0.41
213_A	228_T	0.553	0.41
324_F	327_V	0.552	0.41
22_V	163_S	0.552	0.41
164_V	393_S	0.552	0.41
219_T	418_V	0.551	0.41
204_V	351_C	0.550	0.41
48_F	64_A	0.549	0.41
210_V	232_G	0.548	0.40
179_E	183_N	0.548	0.40
260_S	270_Y	0.548	0.40
88_V	143_L	0.548	0.40
103_A	238_G	0.547	0.40
207_I	333_L	0.546	0.40
88_V	343_V	0.544	0.40
418_V	422_L	0.544	0.40
138_L	319_F	0.544	0.40
167_I	372_A	0.543	0.40
281_F	382_G	0.543	0.40
110_G	284_A	0.542	0.40
52_A	287_I	0.541	0.40
15_F	159_L	0.540	0.40
36_Q	40_H	0.540	0.40
93_V	110_G	0.540	0.40
23_G	30_P	0.539	0.39
212_A	307_A	0.538	0.39
131_A	134_I	0.538	0.39
89_C	318_V	0.536	0.39
235_A	406_A	0.536	0.39
88_V	417_V	0.534	0.39
16_M	90_Y	0.534	0.39
19_A	31_P	0.534	0.39
98_A	201_G	0.534	0.39
102_T	340_S	0.532	0.39
319_F	375_M	0.532	0.39
316_T	380_L	0.531	0.39
53_V	190_F	0.530	0.39
61_V	64_A	0.529	0.38
79_K	84_L	0.528	0.38
173_S	176_T	0.527	0.38
85_L	204_V	0.527	0.38
36_Q	103_A	0.527	0.38
47_G	56_P	0.526	0.38
422_L	426_W	0.525	0.38
33_V	192_N	0.525	0.38
358_S	415_P	0.525	0.38
8_R	75_T	0.524	0.38
14_G	19_A	0.524	0.38
320_I	407_E	0.523	0.38
169_W	219_T	0.523	0.38
54_G	347_I	0.523	0.38
320_I	356_V	0.522	0.38
43_T	185_A	0.521	0.38
333_L	337_I	0.521	0.38
161_I	278_G	0.519	0.37
346_A	380_L	0.519	0.37
72_S	346_A	0.519	0.37
90_Y	207_I	0.519	0.37
103_A	106_S	0.518	0.37
179_E	414_M	0.518	0.37
256_L	286_L	0.517	0.37
146_T	150_F	0.517	0.37
10_I	186_F	0.516	0.37
323_G	424_I	0.516	0.37
268_H	280_S	0.515	0.37
380_L	418_V	0.515	0.37
43_T	277_G	0.514	0.37
125_Y	131_A	0.514	0.37
299_T	334_S	0.513	0.37
328_V	420_V	0.513	0.37
249_L	270_Y	0.513	0.37
19_A	144_L	0.513	0.37
114_L	143_L	0.512	0.37
235_A	290_A	0.512	0.37
85_L	203_M	0.512	0.37
35_L	254_A	0.512	0.37
237_V	241_L	0.512	0.37
402_R	429_A	0.511	0.37
83_V	309_Y	0.511	0.37
138_L	315_R	0.509	0.36
66_V	151_L	0.509	0.36
129_Y	295_A	0.509	0.36
272_Q	277_G	0.508	0.36
144_L	152_A	0.507	0.36
231_A	387_I	0.507	0.36
85_L	90_Y	0.506	0.36
398_S	402_R	0.504	0.36
152_A	305_F	0.504	0.36
22_V	336_L	0.503	0.36
177_A	182_Q	0.502	0.36
139_Y	293_V	0.501	0.36
19_A	301_A	0.501	0.36
257_V	269_A	0.501	0.36
416_T	423_A	0.500	0.35

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3giaA	1	0.9317	100	0.813	Contact Map
3l1lA	2	0.8815	99.2	0.908	Contact Map
3dh4A	3	0.877	98.9	0.921	Contact Map
2xq2A	2	0.8975	98.6	0.927	Contact Map
4djkA	2	0.877	98.4	0.932	Contact Map
2a65A	2	0.9476	97.3	0.947	Contact Map
4us3A	1	0.8952	96.8	0.951	Contact Map
2jlnA	1	0.9043	96.8	0.951	Contact Map
4wgvA	2	0.8041	96.2	0.954	Contact Map
4xp4A	1	0.9431	89.7	0.965	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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