GREMLIN Database
YEBG - Uncharacterized protein YebG
UniProt: P0ACY9 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG11808
Length: 96 (89)
Sequences: 199 (112)
Seq/√Len: 11.8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
23_K49_M3.4800.98
46_P68_L2.6320.91
18_S60_W2.6290.91
4_E10_I2.5920.90
23_K73_K2.4530.88
21_S24_E2.2820.83
17_M27_A1.9430.72
34_T68_L1.8830.69
18_S55_E1.8770.69
5_V14_E1.8110.66
6_K10_I1.7920.65
20_T73_K1.6830.60
34_T74_T1.6730.60
17_M21_S1.5990.56
21_S60_W1.5940.56
6_K76_K1.5690.55
52_E86_E1.5150.52
61_L88_E1.5070.52
6_K14_E1.4380.48
38_L75_G1.4200.47
23_K75_G1.3810.45
5_V12_E1.3760.45
20_T82_V1.3600.44
45_S60_W1.3570.44
70_T73_K1.3380.43
37_L74_T1.3300.43
39_D58_S1.2960.41
71_I74_T1.2860.41
11_R19_F1.2750.40
34_T38_L1.2720.40
55_E59_L1.2700.40
43_T64_Q1.2640.40
14_E31_M1.2500.39
23_K71_I1.2310.38
40_T58_S1.2310.38
27_A33_D1.1910.36
34_T41_W1.1590.35
53_Q71_I1.1570.35
11_R33_D1.1560.35
19_F27_A1.1530.35
31_M34_T1.1100.33
60_W68_L1.1070.32
6_K17_M1.0930.32
84_G89_E1.0880.32
45_S68_L1.0820.31
36_D68_L1.0340.29
24_E59_L1.0260.29
6_K15_E1.0150.29
16_K61_L0.9950.28
51_D84_G0.9870.27
34_T73_K0.9620.26
10_I57_L0.9610.26
47_V50_E0.9590.26
51_D87_S0.9360.25
23_K48_Q0.9190.25
3_V13_G0.9100.25
8_V59_L0.9080.24
47_V60_W0.9020.24
40_T71_I0.8940.24
58_S69_S0.8910.24
38_L74_T0.8840.24
44_N54_R0.8820.24
27_A62_A0.8680.23
74_T78_P0.8580.23
10_I73_K0.8570.23
31_M51_D0.8540.23
28_Y64_Q0.8420.22
79_S87_S0.8350.22
38_L58_S0.8290.22
19_F62_A0.8140.21
67_V88_E0.8060.21
19_F33_D0.8020.21
69_S75_G0.7890.20
52_E80_P0.7780.20
16_K36_D0.7730.20
17_M59_L0.7710.20
10_I59_L0.7650.20
16_K50_E0.7640.20
2_A15_E0.7620.19
11_R17_M0.7610.19
83_V89_E0.7610.19
83_V87_S0.7560.19
53_Q56_A0.7460.19
39_D43_T0.7410.19
69_S73_K0.7400.19
5_V39_D0.7390.19
5_V54_R0.7270.18
21_S27_A0.7180.18
41_W71_I0.7160.18
66_D88_E0.6990.18
8_V41_W0.6830.17
18_S36_D0.6710.17
16_K63_E0.6660.17
5_V56_A0.6650.17
45_S81_Q0.6640.17
3_V11_R0.6540.16
21_S47_V0.6500.16
43_T69_S0.6480.16
7_Y44_N0.6420.16
7_Y43_T0.6400.16
4_E41_W0.6390.16
10_I23_K0.6360.16
2_A31_M0.6350.16
8_V57_L0.6300.16
20_T89_E0.6290.16
14_E71_I0.6260.16
1_M9_V0.6260.16
36_D39_D0.6180.15
80_P88_E0.6160.15
8_V30_K0.6080.15
11_R27_A0.6050.15
5_V43_T0.5820.14
49_M73_K0.5800.14
64_Q82_V0.5760.14
57_L81_Q0.5730.14
3_V19_F0.5710.14
52_E61_L0.5670.14
71_I75_G0.5630.14
7_Y56_A0.5530.14
9_V13_G0.5500.14
67_V89_E0.5460.14
5_V53_Q0.5400.13
8_V72_L0.5400.13
48_Q54_R0.5390.13
49_M53_Q0.5370.13
86_E89_E0.5320.13
10_I17_M0.5260.13
39_D55_E0.5150.13
40_T82_V0.5130.13
84_G88_E0.5110.13
50_E68_L0.5090.13
39_D54_R0.5090.13
42_L62_A0.5030.13
14_E36_D0.5000.13
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3ermA 2 0.6979 100 0.23 Contact Map
1ojqA 1 0.7396 6.1 0.941 Contact Map
4n8nA 1 0.7292 5.1 0.943 Contact Map
3izsv 1 0.5104 5 0.943 Contact Map
1yiqA 1 0.5833 4.9 0.943 Contact Map
4bgvA 4 0.5417 3.8 0.946 Contact Map
4bpeY 1 0.4583 3.6 0.947 Contact Map
3rvaA 2 0.2812 3.1 0.948 Contact Map
3pg7A 1 0.4583 3 0.949 Contact Map
3dwvA 1 0.375 2.9 0.949 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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