XYLR - ECOLI - GREMLIN Contacts

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XYLR - Xylose operon regulatory protein

UniProt:	P0ACI3	Sequences: MFTKRHRITLLFNANKAYDRQVVEGVGEYLQASQSEWDIFIEEDFRARIDKIKDWLGDGVIADFDDKQIEQALADVDVPIVGVGGSYHLAESYPPVHYIATDNYALVESAFLHLKEKGVNRFAFYGLPESSGKRWATEREYAFRQLVAEEKYRGVVYQGLETAPENWQHAQNRLADWLQTLPPQTGIIAVTDARARHILQVCEHLHIPVPEKLCVIGIDNEELTRYLSRVALSSVAQGARQMGYQAAKLLHRLLDKEEMPLQRILVPPVRVIERRSTDYRSLTDPAVIQAMHYIRNHACKGIKVDQVLDAVGISRSNLEKRFKEEVGETIHAMIHAEKLEKARSLLISTTLSINEISQMCGYPSLQYFYSVFKKAYDTTPKEYRDVNSEVML	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG20253
Length:	392 (370)
Sequences:	486 (405)
Seq/√Len:	21.1

ECOLI - XYLR

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
192_D	217_G	4.906	1.00
107_V	111_F	4.696	1.00
342_A	368_F	4.510	1.00
297_H	300_K	4.507	1.00
104_Y	145_Q	4.481	1.00
114_L	186_G	4.125	1.00
328_E	333_M	3.962	1.00
245_Q	248_K	3.873	1.00
139_R	192_D	3.780	1.00
8_I	254_L	3.719	1.00
284_D	321_R	3.671	1.00
110_A	216_I	3.274	1.00
59_G	250_L	3.218	1.00
114_L	216_I	3.133	1.00
110_A	188_I	3.093	1.00
139_R	217_G	3.049	0.99
220_N	236_A	2.970	0.99
349_T	384_R	2.949	0.99
333_M	336_A	2.919	0.99
216_I	235_V	2.767	0.99
351_L	359_M	2.726	0.99
252_R	257_E	2.656	0.98
192_D	234_S	2.597	0.98
304_V	315_R	2.472	0.98
353_I	368_F	2.425	0.97
202_C	213_L	2.424	0.97
220_N	274_R	2.386	0.97
111_F	142_A	2.360	0.97
139_R	219_D	2.313	0.96
183_P	213_L	2.311	0.96
294_I	334_I	2.278	0.96
328_E	336_A	2.269	0.96
106_L	218_I	2.218	0.95
199_L	215_V	2.211	0.95
349_T	356_I	2.127	0.94
339_L	376_Y	2.118	0.94
111_F	115_K	2.084	0.93
25_G	243_G	2.046	0.93
119_V	186_G	2.034	0.93
36_E	39_I	2.012	0.92
315_R	319_E	1.992	0.92
107_V	142_A	1.990	0.92
122_F	143_F	1.954	0.91
139_R	195_A	1.938	0.91
105_A	108_E	1.924	0.90
178_L	207_I	1.896	0.90
216_I	271_V	1.891	0.90
67_K	71_Q	1.881	0.89
331_H	335_H	1.849	0.88
211_E	255_D	1.847	0.88
143_F	147_V	1.840	0.88
323_K	328_E	1.838	0.88
216_I	233_S	1.835	0.88
29_Y	251_H	1.824	0.88
373_K	386_V	1.781	0.86
28_E	240_R	1.754	0.86
217_G	234_S	1.753	0.86
81_V	378_T	1.715	0.84
330_I	362_Y	1.681	0.83
117_K	277_T	1.679	0.83
347_I	383_Y	1.649	0.82
269_V	383_Y	1.611	0.80
183_P	362_Y	1.610	0.80
32_A	244_Y	1.581	0.79
108_E	112_L	1.560	0.78
246_A	372_F	1.535	0.77
177_W	221_E	1.532	0.77
232_L	266_V	1.521	0.76
216_I	277_T	1.514	0.76
367_Y	370_S	1.511	0.76
103_N	237_Q	1.510	0.76
233_S	277_T	1.466	0.73
8_I	357_S	1.464	0.73
225_R	230_V	1.460	0.73
192_D	218_I	1.454	0.73
78_V	198_I	1.454	0.73
10_L	26_V	1.429	0.71
345_L	351_L	1.421	0.71
103_N	138_E	1.404	0.70
16_K	84_G	1.404	0.70
290_A	302_I	1.403	0.70
293_Y	307_V	1.390	0.69
225_R	234_S	1.381	0.69
102_D	198_I	1.380	0.69
186_G	216_I	1.379	0.69
9_T	57_G	1.377	0.68
220_N	234_S	1.373	0.68
139_R	234_S	1.373	0.68
184_Q	213_L	1.369	0.68
140_E	144_R	1.342	0.66
163_A	191_T	1.335	0.66
206_H	313_I	1.324	0.65
260_P	383_Y	1.311	0.65
112_L	146_L	1.309	0.64
21_Q	26_V	1.308	0.64
283_T	339_L	1.307	0.64
18_Y	219_D	1.307	0.64
233_S	322_F	1.301	0.64
236_A	272_I	1.300	0.64
79_P	362_Y	1.299	0.64
210_P	276_S	1.288	0.63
248_K	330_I	1.276	0.62
304_V	334_I	1.265	0.62
201_V	205_L	1.261	0.61
121_R	182_P	1.257	0.61
148_A	349_T	1.255	0.61
177_W	181_L	1.254	0.61
84_G	191_T	1.248	0.61
216_I	291_M	1.246	0.61
172_N	179_Q	1.244	0.60
60_V	155_V	1.225	0.59
274_R	349_T	1.221	0.59
346_L	380_P	1.219	0.59
343_R	379_T	1.215	0.59
330_I	335_H	1.214	0.58
266_V	353_I	1.212	0.58
65_D	82_G	1.205	0.58
103_N	367_Y	1.202	0.58
188_I	218_I	1.200	0.58
163_A	194_R	1.178	0.56
243_G	315_R	1.169	0.56
80_I	266_V	1.166	0.55
221_E	368_F	1.160	0.55
382_E	385_D	1.160	0.55
341_K	344_S	1.157	0.55
344_S	348_S	1.152	0.54
111_F	146_L	1.146	0.54
35_S	42_E	1.144	0.54
342_A	376_Y	1.143	0.54
18_Y	217_G	1.139	0.54
293_Y	302_I	1.138	0.53
164_P	209_V	1.131	0.53
336_A	362_Y	1.131	0.53
114_L	220_N	1.128	0.53
58_D	71_Q	1.128	0.53
326_V	330_I	1.122	0.52
124_F	135_W	1.117	0.52
15_N	23_V	1.109	0.52
79_P	217_G	1.106	0.51
274_R	384_R	1.099	0.51
78_V	96_V	1.095	0.51
182_P	260_P	1.095	0.51
107_V	218_I	1.094	0.51
356_I	360_C	1.091	0.50
127_L	194_R	1.091	0.50
290_A	307_V	1.091	0.50
289_Q	379_T	1.083	0.50
127_L	217_G	1.082	0.50
326_V	371_V	1.078	0.49
213_L	257_E	1.076	0.49
125_Y	198_I	1.074	0.49
136_A	230_V	1.069	0.49
138_E	287_V	1.064	0.49
62_A	99_I	1.059	0.48
287_V	325_E	1.051	0.48
81_V	108_E	1.046	0.47
30_L	37_W	1.039	0.47
121_R	155_V	1.038	0.47
191_T	219_D	1.033	0.46
103_N	106_L	1.030	0.46
52_I	57_G	1.015	0.45
303_K	313_I	1.011	0.45
22_V	41_I	1.009	0.45
104_Y	141_Y	1.008	0.45
366_Q	370_S	0.999	0.44
34_Q	178_L	0.997	0.44
316_S	319_E	0.994	0.44
326_V	343_R	0.994	0.44
113_H	349_T	0.993	0.44
114_L	235_V	0.990	0.44
230_V	276_S	0.987	0.43
234_S	274_R	0.984	0.43
236_A	270_R	0.982	0.43
179_Q	205_L	0.971	0.42
202_C	277_T	0.968	0.42
114_L	195_A	0.965	0.42
83_V	246_A	0.964	0.42
114_L	238_G	0.963	0.42
101_T	107_V	0.963	0.42
298_A	360_C	0.962	0.42
266_V	358_Q	0.961	0.42
83_V	190_V	0.960	0.42
10_L	13_N	0.960	0.42
368_F	376_Y	0.956	0.41
69_I	72_A	0.956	0.41
313_I	360_C	0.946	0.41
127_L	323_K	0.946	0.41
329_T	332_A	0.946	0.41
185_T	362_Y	0.946	0.41
120_N	147_V	0.945	0.41
185_T	213_L	0.942	0.41
108_E	307_V	0.937	0.40
110_A	277_T	0.936	0.40
323_K	382_E	0.935	0.40
192_D	195_A	0.927	0.40
336_A	375_A	0.920	0.39
334_I	337_E	0.918	0.39
125_Y	170_A	0.918	0.39
118_G	246_A	0.911	0.39
211_E	344_S	0.909	0.38
117_K	279_Y	0.908	0.38
34_Q	37_W	0.906	0.38
187_I	198_I	0.905	0.38
191_T	367_Y	0.903	0.38
25_G	234_S	0.900	0.38
26_V	41_I	0.895	0.38
100_A	191_T	0.890	0.37
246_A	361_G	0.887	0.37
125_Y	227_L	0.887	0.37
337_E	357_S	0.886	0.37
343_R	376_Y	0.886	0.37
80_I	364_S	0.885	0.37
308_L	373_K	0.883	0.37
61_I	142_A	0.883	0.37
122_F	235_V	0.881	0.37
206_H	260_P	0.880	0.37
57_G	368_F	0.880	0.37
18_Y	234_S	0.880	0.37
124_F	188_I	0.879	0.37
195_A	217_G	0.879	0.37
343_R	383_Y	0.878	0.37
339_L	364_S	0.875	0.36
58_D	219_D	0.874	0.36
184_Q	214_C	0.873	0.36
294_I	337_E	0.872	0.36
361_G	368_F	0.869	0.36
284_D	291_M	0.865	0.36
59_G	113_H	0.865	0.36
115_K	244_Y	0.862	0.36
199_L	232_L	0.858	0.35
44_D	203_E	0.858	0.35
136_A	190_V	0.856	0.35
18_Y	192_D	0.851	0.35
287_V	313_I	0.848	0.35
322_F	333_M	0.847	0.35
192_D	220_N	0.844	0.34
215_V	276_S	0.839	0.34
241_Q	245_Q	0.833	0.34
125_Y	191_T	0.829	0.34
252_R	382_E	0.827	0.33
151_K	176_D	0.827	0.33
247_A	278_D	0.823	0.33
293_Y	306_Q	0.821	0.33
273_E	276_S	0.819	0.33
189_A	195_A	0.816	0.33
30_L	108_E	0.813	0.33
26_V	247_A	0.808	0.32
367_Y	371_V	0.806	0.32
317_N	321_R	0.805	0.32
135_W	221_E	0.804	0.32
52_I	99_I	0.803	0.32
52_I	192_D	0.801	0.32
60_V	187_I	0.798	0.32
375_A	379_T	0.795	0.32
105_A	328_E	0.794	0.32
84_G	107_V	0.794	0.32
302_I	322_F	0.792	0.31
302_I	307_V	0.792	0.31
336_A	383_Y	0.791	0.31
117_K	273_E	0.789	0.31
105_A	145_Q	0.788	0.31
84_G	100_A	0.787	0.31
221_E	231_A	0.786	0.31
61_I	176_D	0.785	0.31
302_I	305_D	0.782	0.31
367_Y	380_P	0.781	0.31
111_F	122_F	0.780	0.31
274_R	277_T	0.772	0.30
212_K	365_L	0.772	0.30
317_N	368_F	0.770	0.30
25_G	29_Y	0.770	0.30
59_G	79_P	0.769	0.30
43_E	254_L	0.768	0.30
213_L	290_A	0.766	0.30
61_I	246_A	0.764	0.30
122_F	220_N	0.763	0.30
327_G	348_S	0.763	0.30
111_F	188_I	0.763	0.30
70_E	209_V	0.756	0.29
333_M	337_E	0.753	0.29
16_K	19_D	0.753	0.29
187_I	211_E	0.751	0.29
26_V	148_A	0.751	0.29
297_H	310_A	0.751	0.29
209_V	246_A	0.746	0.29
186_G	214_C	0.746	0.29
7_R	47_A	0.746	0.29
240_R	379_T	0.745	0.29
270_R	343_R	0.745	0.29
220_N	235_V	0.742	0.29
318_L	330_I	0.742	0.29
206_H	210_P	0.742	0.29
332_A	377_D	0.740	0.28
100_A	103_N	0.736	0.28
212_K	282_L	0.736	0.28
222_E	271_V	0.735	0.28
213_L	341_K	0.734	0.28
190_V	218_I	0.734	0.28
106_L	242_M	0.732	0.28
329_T	381_K	0.731	0.28
13_N	16_K	0.729	0.28
200_Q	218_I	0.727	0.28
339_L	348_S	0.727	0.28
190_V	238_G	0.724	0.28
115_K	150_E	0.724	0.28
84_G	127_L	0.722	0.28
120_N	257_E	0.722	0.28
203_E	271_V	0.720	0.27
292_H	296_N	0.719	0.27
233_S	276_S	0.719	0.27
112_L	245_Q	0.719	0.27
113_H	199_L	0.719	0.27
69_I	168_Q	0.716	0.27
118_G	154_G	0.715	0.27
20_R	110_A	0.715	0.27
109_S	357_S	0.715	0.27
141_Y	312_G	0.714	0.27
9_T	60_V	0.712	0.27
127_L	191_T	0.711	0.27
108_E	245_Q	0.710	0.27
290_A	293_Y	0.710	0.27
151_K	206_H	0.708	0.27
126_G	308_L	0.706	0.27
106_L	237_Q	0.705	0.27
126_G	284_D	0.703	0.27
76_V	297_H	0.703	0.27
13_N	23_V	0.701	0.26
115_K	310_A	0.701	0.26
315_R	321_R	0.700	0.26
10_L	37_W	0.700	0.26
174_L	177_W	0.697	0.26
329_T	374_K	0.696	0.26
332_A	336_A	0.695	0.26
345_L	376_Y	0.694	0.26
192_D	219_D	0.692	0.26
178_L	353_I	0.692	0.26
308_L	312_G	0.692	0.26
148_A	213_L	0.691	0.26
304_V	321_R	0.690	0.26
148_A	236_A	0.689	0.26
81_V	191_T	0.689	0.26
99_I	292_H	0.688	0.26
260_P	263_R	0.684	0.26
10_L	44_D	0.684	0.26
187_I	327_G	0.683	0.26
214_C	232_L	0.683	0.26
81_V	329_T	0.683	0.26
142_A	146_L	0.678	0.25
378_T	386_V	0.677	0.25
180_T	297_H	0.677	0.25
189_A	297_H	0.675	0.25
282_L	292_H	0.673	0.25
337_E	355_E	0.670	0.25
29_Y	247_A	0.669	0.25
278_D	293_Y	0.668	0.25
8_I	14_A	0.667	0.25
103_N	139_R	0.666	0.25
298_A	302_I	0.663	0.25
201_V	285_P	0.662	0.24
198_I	360_C	0.661	0.24
118_G	232_L	0.660	0.24
211_E	328_E	0.658	0.24
181_L	329_T	0.656	0.24
30_L	35_S	0.656	0.24
71_Q	176_D	0.655	0.24
279_Y	341_K	0.653	0.24
24_E	28_E	0.653	0.24
202_C	207_I	0.652	0.24
313_I	376_Y	0.652	0.24
226_Y	294_I	0.651	0.24
345_L	359_M	0.649	0.24
210_P	346_L	0.648	0.24
222_E	362_Y	0.645	0.24
233_S	273_E	0.641	0.23
13_N	83_V	0.640	0.23
119_V	213_L	0.640	0.23
284_D	304_V	0.639	0.23
86_S	138_E	0.637	0.23
52_I	199_L	0.636	0.23
10_L	27_G	0.632	0.23
56_L	382_E	0.631	0.23
167_W	200_Q	0.630	0.23
47_A	336_A	0.630	0.23
10_L	22_V	0.630	0.23
21_Q	272_I	0.629	0.23
328_E	349_T	0.627	0.23
372_F	383_Y	0.625	0.23
139_R	218_I	0.625	0.23
326_V	333_M	0.624	0.23
229_R	379_T	0.624	0.23
107_V	188_I	0.623	0.23
121_R	173_R	0.622	0.23
123_A	181_L	0.622	0.23
209_V	232_L	0.622	0.23
113_H	186_G	0.621	0.22
185_T	253_L	0.621	0.22
11_L	16_K	0.620	0.22
112_L	116_E	0.620	0.22
135_W	217_G	0.619	0.22
350_T	357_S	0.619	0.22
187_I	256_K	0.616	0.22
164_P	175_A	0.616	0.22
379_T	383_Y	0.613	0.22
62_A	80_I	0.613	0.22
102_D	362_Y	0.611	0.22
353_I	381_K	0.609	0.22
344_S	385_D	0.608	0.22
58_D	294_I	0.605	0.22
104_Y	138_E	0.605	0.22
299_C	338_K	0.605	0.22
82_G	219_D	0.604	0.22
102_D	243_G	0.604	0.22
335_H	371_V	0.603	0.22
342_A	361_G	0.602	0.22
258_E	343_R	0.601	0.22
211_E	285_P	0.601	0.22
114_L	140_E	0.600	0.22
122_F	316_S	0.599	0.21
180_T	353_I	0.599	0.21
61_I	322_F	0.598	0.21
235_V	246_A	0.595	0.21
373_K	382_E	0.595	0.21
154_G	257_E	0.591	0.21
340_E	375_A	0.591	0.21
143_F	334_I	0.590	0.21
101_T	113_H	0.589	0.21
183_P	212_K	0.589	0.21
293_Y	303_K	0.588	0.21
301_G	370_S	0.587	0.21
103_N	192_D	0.586	0.21
14_A	41_I	0.586	0.21
218_I	238_G	0.586	0.21
295_R	333_M	0.585	0.21
113_H	116_E	0.585	0.21
355_E	373_K	0.584	0.21
74_A	80_I	0.584	0.21
136_A	376_Y	0.583	0.21
114_L	233_S	0.581	0.21
296_N	362_Y	0.580	0.21
67_K	303_K	0.580	0.21
78_V	329_T	0.580	0.21
255_D	262_Q	0.579	0.21
302_I	311_V	0.579	0.21
92_S	191_T	0.579	0.21
87_Y	92_S	0.578	0.21
213_L	304_V	0.576	0.20
84_G	99_I	0.573	0.20
219_D	364_S	0.573	0.20
332_A	335_H	0.573	0.20
161_E	385_D	0.572	0.20
145_Q	369_Y	0.572	0.20
338_K	381_K	0.570	0.20
71_Q	269_V	0.570	0.20
272_I	302_I	0.570	0.20
78_V	253_L	0.568	0.20
209_V	374_K	0.568	0.20
12_F	19_D	0.568	0.20
184_Q	276_S	0.567	0.20
124_F	302_I	0.566	0.20
104_Y	112_L	0.565	0.20
16_K	191_T	0.565	0.20
275_R	330_I	0.563	0.20
12_F	15_N	0.562	0.20
82_G	194_R	0.562	0.20
142_A	195_A	0.562	0.20
220_N	319_E	0.562	0.20
144_R	156_V	0.562	0.20
144_R	148_A	0.561	0.20
62_A	202_C	0.561	0.20
122_F	147_V	0.559	0.20
41_I	370_S	0.559	0.20
127_L	192_D	0.558	0.20
289_Q	309_D	0.558	0.20
298_A	373_K	0.555	0.20
244_Y	277_T	0.555	0.20
320_K	331_H	0.555	0.20
301_G	307_V	0.554	0.20
195_A	219_D	0.553	0.19
117_K	202_C	0.553	0.19
318_L	347_I	0.550	0.19
284_D	325_E	0.549	0.19
356_I	384_R	0.548	0.19
112_L	206_H	0.546	0.19
14_A	337_E	0.544	0.19
270_R	349_T	0.542	0.19
24_E	27_G	0.541	0.19
101_T	191_T	0.541	0.19
78_V	252_R	0.541	0.19
317_N	320_K	0.541	0.19
123_A	319_E	0.540	0.19
59_G	97_H	0.540	0.19
145_Q	260_P	0.540	0.19
136_A	192_D	0.540	0.19
8_I	264_I	0.539	0.19
30_L	186_G	0.539	0.19
320_K	326_V	0.538	0.19
343_R	375_A	0.536	0.19
141_Y	145_Q	0.536	0.19
126_G	304_V	0.535	0.19
31_Q	329_T	0.534	0.19
273_E	279_Y	0.534	0.19
81_V	99_I	0.532	0.19
26_V	37_W	0.532	0.19
321_R	325_E	0.532	0.19
249_L	271_V	0.531	0.19
274_R	281_S	0.531	0.19
287_V	290_A	0.531	0.19
48_R	329_T	0.530	0.19
60_V	253_L	0.530	0.19
28_E	40_F	0.529	0.19
52_I	217_G	0.529	0.19
107_V	233_S	0.527	0.18
117_K	125_Y	0.526	0.18
83_V	273_E	0.524	0.18
27_G	379_T	0.523	0.18
177_W	316_S	0.523	0.18
46_R	287_V	0.521	0.18
8_I	21_Q	0.521	0.18
106_L	191_T	0.521	0.18
257_E	336_A	0.521	0.18
315_R	364_S	0.521	0.18
122_F	276_S	0.520	0.18
275_R	296_N	0.520	0.18
177_W	307_V	0.520	0.18
7_R	36_E	0.520	0.18
178_L	188_I	0.519	0.18
74_A	104_Y	0.518	0.18
111_F	150_E	0.518	0.18
307_V	310_A	0.516	0.18
208_P	212_K	0.515	0.18
48_R	235_V	0.515	0.18
334_I	380_P	0.514	0.18
184_Q	384_R	0.512	0.18
195_A	298_A	0.511	0.18
284_D	308_L	0.511	0.18
209_V	371_V	0.510	0.18
252_R	353_I	0.509	0.18
210_P	233_S	0.509	0.18
117_K	218_I	0.508	0.18
136_A	252_R	0.507	0.18
371_V	374_K	0.507	0.18
101_T	242_M	0.507	0.18
290_A	311_V	0.504	0.18
138_E	334_I	0.503	0.17
178_L	231_A	0.503	0.17
179_Q	347_I	0.503	0.17
76_V	147_V	0.503	0.17
112_L	378_T	0.503	0.17
353_I	370_S	0.502	0.17
143_F	217_G	0.502	0.17
336_A	350_T	0.502	0.17
99_I	163_A	0.501	0.17
212_K	216_I	0.501	0.17
271_V	294_I	0.500	0.17
233_S	284_D	0.500	0.17

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4fe7A	2	0.9668	100	0.378	Contact Map
3huuA	2	0.6607	100	0.599	Contact Map
2iksA	2	0.6837	100	0.6	Contact Map
3dbiA	2	0.6862	100	0.6	Contact Map
2hsgA	1	0.6811	100	0.6	Contact Map
3brqA	2	0.6811	100	0.602	Contact Map
4o5aA	2	0.6684	100	0.603	Contact Map
2o20A	2	0.6811	100	0.603	Contact Map
3jvdA	2	0.6556	100	0.607	Contact Map
3k4hA	2	0.6913	100	0.607	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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