GREMLIN Database
YIBF - Uncharacterized GST-like protein YibF
UniProt: P0ACA1 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG11762
Length: 202 (189)
Sequences: 21637 (14962)
Seq/√Len: 1088.3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
21_E191_R3.4711.00
68_E91_R3.3061.00
72_L87_S3.0121.00
19_L26_F2.9351.00
183_K187_N2.9331.00
5_G12_V2.9171.00
20_L196_R2.7791.00
58_E85_L2.7261.00
135_D178_R2.6391.00
41_A47_G2.5041.00
53_V59_C2.2901.00
20_L26_F2.2351.00
138_E180_H2.1941.00
5_G28_F2.0351.00
32_L35_N2.0311.00
142_V180_H1.9961.00
131_N177_D1.9431.00
173_G176_V1.9371.00
83_D86_E1.9351.00
21_E193_S1.9301.00
18_L67_A1.9261.00
22_K71_E1.8901.00
72_L91_R1.8201.00
43_F53_V1.8031.00
151_V156_I1.7871.00
124_L128_E1.7801.00
4_V53_V1.7491.00
182_V186_E1.7411.00
38_N42_Q1.7411.00
145_T187_N1.7051.00
89_R92_K1.6921.00
53_V57_G1.6881.00
120_E124_L1.6751.00
159_A188_L1.6231.00
43_F51_V1.5851.00
17_I194_F1.5801.00
55_E69_Y1.5751.00
180_H183_K1.5611.00
39_G42_Q1.5451.00
93_I140_Y1.5291.00
24_I74_N1.4971.00
145_T149_D1.4891.00
40_V43_F1.4761.00
135_D139_G1.4731.00
40_V51_V1.4651.00
81_P90_V1.4421.00
55_E58_E1.4311.00
186_E190_S1.4241.00
80_L90_V1.3991.00
140_Y144_G1.3791.00
151_V191_R1.3661.00
18_L22_K1.3351.00
4_V31_E1.3351.00
127_R131_N1.3351.00
147_K152_N1.3261.00
95_A98_D1.3061.00
14_K63_S1.2961.00
151_V188_L1.2721.00
185_V189_F1.2701.00
18_L79_M1.2531.00
192_E196_R1.2281.00
190_S195_A1.2251.00
61_F92_K1.2121.00
176_V182_V1.2011.00
22_K77_P1.1911.00
68_E95_A1.1811.00
85_L89_R1.1801.00
55_E73_M1.1801.00
15_L67_A1.1741.00
3_L19_L1.1731.00
131_N178_R1.1601.00
129_K132_R1.1401.00
60_W88_L1.1381.00
115_A118_Q1.1361.00
21_E151_V1.1251.00
79_M156_I1.1211.00
135_D177_D1.1081.00
94_E157_A1.0931.00
173_G177_D1.0891.00
119_S122_E1.0841.00
73_M84_P1.0791.00
138_E142_V1.0741.00
46_L96_L1.0681.00
48_K62_D1.0651.00
22_K70_I1.0521.00
55_E74_N1.0511.00
86_E89_R1.0361.00
131_N135_D1.0301.00
128_E132_R1.0291.00
124_L127_R1.0271.00
67_A153_L1.0181.00
14_K157_A1.0181.00
95_A99_G1.0161.00
44_N51_V1.0011.00
40_V44_N0.9951.00
86_E150_T0.9911.00
78_A150_T0.9881.00
128_E131_N0.9881.00
132_R135_D0.9871.00
146_L158_I0.9841.00
138_E179_P0.9801.00
89_R140_Y0.9791.00
97_A158_I0.9751.00
5_G16_S0.9741.00
12_V49_V0.9731.00
159_A189_F0.9721.00
186_E189_F0.9721.00
139_G142_V0.9581.00
84_P88_L0.9581.00
67_A157_A0.9481.00
184_L188_L0.9401.00
140_Y143_D0.9251.00
136_V140_Y0.9231.00
15_L66_I0.9171.00
192_E195_A0.9161.00
166_N185_V0.9101.00
125_R129_K0.9091.00
159_A194_F0.9081.00
64_P95_A0.9071.00
187_N190_S0.9051.00
9_S12_V0.9041.00
90_V153_L0.8991.00
43_F59_C0.8951.00
94_E153_L0.8931.00
80_L91_R0.8911.00
22_K75_V0.8841.00
58_E89_R0.8781.00
121_D124_L0.8711.00
51_V59_C0.8691.00
21_E156_I0.8591.00
163_G189_F0.8561.00
183_K186_E0.8531.00
46_L61_F0.8501.00
17_I156_I0.8471.00
16_S20_L0.8401.00
136_V139_G0.8351.00
16_S28_F0.8351.00
64_P157_A0.8351.00
87_S91_R0.8331.00
38_N41_A0.8331.00
70_I74_N0.8331.00
166_N189_F0.8211.00
65_I88_L0.8091.00
58_E88_L0.8031.00
90_V152_N0.8021.00
69_Y73_M0.8011.00
64_P98_D0.8011.00
89_R144_G0.8001.00
14_K67_A0.7991.00
78_A82_R0.7991.00
7_Y30_N0.7991.00
162_V185_V0.7951.00
90_V154_A0.7951.00
81_P86_E0.7941.00
96_L133_S0.7911.00
118_Q123_L0.7901.00
120_E123_L0.7861.00
139_G143_D0.7851.00
138_E178_R0.7831.00
89_R93_I0.7821.00
22_K78_A0.7811.00
51_V61_F0.7711.00
144_G149_D0.7701.00
126_Q129_K0.7701.00
125_R128_E0.7691.00
71_E78_A0.7681.00
65_I92_K0.7651.00
137_L158_I0.7561.00
104_G107_S0.7481.00
6_S9_S0.7371.00
17_I160_C0.7311.00
18_L156_I0.7301.00
163_G194_F0.7291.00
138_E181_L0.7271.00
62_D100_I0.7241.00
4_V29_I0.7191.00
146_L149_D0.7161.00
68_E72_L0.7151.00
17_I193_S0.7131.00
178_R181_L0.7121.00
17_I159_A0.7111.00
177_D182_V0.7091.00
52_L70_I0.7081.00
106_V110_E0.7061.00
145_T183_K0.7041.00
93_I96_L0.6991.00
108_V111_Q0.6941.00
22_K74_N0.6931.00
171_A174_W0.6931.00
162_V184_L0.6911.00
90_V147_K0.6901.00
137_L181_L0.6841.00
80_L153_L0.6841.00
13_R197_T0.6811.00
56_E85_L0.6761.00
18_L71_E0.6751.00
134_L178_R0.6721.00
77_P82_R0.6631.00
148_T155_T0.6611.00
71_E80_L0.6591.00
4_V43_F0.6581.00
20_L25_T0.6581.00
110_E121_D0.6551.00
144_G180_H0.6541.00
134_L181_L0.6521.00
104_G133_S0.6501.00
11_F14_K0.6491.00
37_D41_A0.6451.00
107_S110_E0.6451.00
75_V78_A0.6381.00
3_L16_S0.6371.00
86_E147_K0.6361.00
107_S111_Q0.6321.00
121_D125_R0.6301.00
105_L130_I0.6271.00
146_L152_N0.6171.00
103_A107_S0.6151.00
72_L84_P0.6101.00
174_W177_D0.6101.00
57_G85_L0.6091.00
135_D138_E0.6091.00
106_V109_R0.6061.00
87_S90_V0.6061.00
88_L91_R0.6051.00
32_L36_A0.6041.00
71_E153_L0.6031.00
138_E141_L0.6031.00
18_L153_L0.6031.00
19_L70_I0.6021.00
16_S197_T0.6001.00
14_K64_P0.5971.00
106_V111_Q0.5941.00
123_L127_R0.5921.00
143_D180_H0.5921.00
84_P87_S0.5911.00
60_W66_I0.5861.00
11_F48_K0.5861.00
22_K79_M0.5851.00
92_K140_Y0.5841.00
107_S129_K0.5821.00
73_M85_L0.5821.00
5_G30_N0.5791.00
14_K98_D0.5791.00
72_L88_L0.5761.00
96_L136_V0.5751.00
122_E125_R0.5741.00
13_R163_G0.5741.00
11_F102_D0.5721.00
64_P94_E0.5701.00
76_A82_R0.5691.00
140_Y146_L0.5671.00
122_E126_Q0.5671.00
179_P182_V0.5641.00
68_E80_L0.5631.00
188_L194_F0.5581.00
71_E75_V0.5561.00
119_S123_L0.5501.00
166_N182_V0.5501.00
55_E60_W0.5451.00
118_Q121_D0.5381.00
19_L24_I0.5341.00
13_R164_Y0.5311.00
91_R95_A0.5311.00
182_V185_V0.5291.00
58_E69_Y0.5281.00
12_V28_F0.5271.00
97_A101_M0.5271.00
101_M105_L0.5261.00
156_I160_C0.5221.00
72_L80_L0.5221.00
130_I165_L0.5221.00
115_A119_S0.5201.00
93_I147_K0.5161.00
31_E37_D0.5131.00
20_L23_G0.5121.00
65_I95_A0.5101.00
20_L193_S0.5101.00
132_R136_V0.5091.00
130_I134_L0.5061.00
65_I91_R0.5051.00
141_L180_H0.5041.00
46_L136_V0.5001.00
33_P36_A0.5001.00
63_S157_A0.5001.00
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3r2qA 2 1 100 0.161 Contact Map
4mk3A 2 0.9901 100 0.188 Contact Map
3touA 2 1 100 0.195 Contact Map
4gltA 2 0.995 100 0.2 Contact Map
3m0fA 2 0.9802 100 0.201 Contact Map
1k0dA 2 0.9851 100 0.204 Contact Map
4n0vA 2 0.9901 100 0.205 Contact Map
4jedA 2 1 100 0.207 Contact Map
4o7hA 2 0.9901 100 0.209 Contact Map
3lypA 2 0.9554 100 0.211 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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