SURA - ECOLI - GREMLIN Contacts

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SURA - Chaperone SurA

UniProt:	P0ABZ6	Sequences: MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKILSN	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG10985
Length:	428 (391)
Sequences:	942 (827)
Seq/√Len:	41.8

ECOLI - SURA PPID

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
30_A	71_M	4.927	1.00
250_A	256_V	4.569	1.00
93_D	133_R	4.039	1.00
203_V	207_R	4.025	1.00
95_Q	140_E	3.652	1.00
289_H	293_K	3.644	1.00
290_I	293_K	3.537	1.00
173_E	274_R	3.337	1.00
33_N	82_Q	3.201	1.00
289_H	292_L	3.167	1.00
196_E	200_R	3.144	1.00
251_K	254_D	3.054	1.00
237_Q	244_A	3.014	1.00
241_G	245_Q	2.964	1.00
290_I	294_P	2.941	1.00
160_L	164_V	2.786	1.00
205_Q	210_A	2.721	1.00
162_Q	165_G	2.709	1.00
114_M	129_R	2.590	1.00
289_H	294_P	2.561	1.00
216_A	229_G	2.519	1.00
290_I	295_S	2.374	1.00
117_R	121_D	2.358	1.00
371_S	374_G	2.273	1.00
192_V	260_R	2.227	1.00
220_S	229_G	2.227	1.00
156_E	405_K	2.196	1.00
289_H	295_S	2.158	0.99
91_I	137_I	2.157	0.99
92_S	95_Q	2.154	0.99
320_T	323_A	2.096	0.99
110_T	113_Q	2.087	0.99
49_V	70_I	2.083	0.99
261_S	264_G	2.076	0.99
233_W	272_D	2.029	0.99
158_E	282_V	2.025	0.99
14_I	18_S	2.025	0.99
12_A	16_N	1.981	0.99
202_I	215_L	1.970	0.99
212_F	232_G	1.970	0.99
181_I	195_A	1.954	0.99
212_F	220_S	1.947	0.99
233_W	274_R	1.934	0.99
10_G	14_I	1.930	0.99
157_V	282_V	1.910	0.99
177_S	271_N	1.908	0.99
83_M	86_K	1.906	0.99
360_L	366_S	1.893	0.99
291_L	295_S	1.893	0.99
113_Q	116_S	1.887	0.99
203_V	257_G	1.858	0.98
30_A	75_I	1.851	0.98
9_L	13_M	1.846	0.98
236_I	248_S	1.826	0.98
220_S	228_G	1.819	0.98
212_F	216_A	1.819	0.98
288_R	293_K	1.818	0.98
164_V	167_Q	1.786	0.98
250_A	270_V	1.785	0.98
356_A	359_R	1.785	0.98
212_F	222_D	1.781	0.98
311_A	315_K	1.757	0.98
247_L	268_L	1.745	0.98
361_N	364_Q	1.745	0.98
261_S	266_H	1.727	0.97
175_N	271_N	1.716	0.97
289_H	296_P	1.711	0.97
97_D	129_R	1.710	0.97
33_N	79_I	1.706	0.97
154_P	158_E	1.698	0.97
212_F	228_G	1.696	0.97
396_R	399_R	1.691	0.97
301_E	305_V	1.684	0.97
45_L	77_D	1.680	0.97
281_S	285_V	1.668	0.97
260_R	265_F	1.659	0.97
196_E	260_R	1.646	0.97
234_G	239_L	1.618	0.96
281_S	284_E	1.593	0.96
141_V	413_W	1.582	0.96
206_A	267_I	1.555	0.95
103_I	107_N	1.553	0.95
189_S	193_N	1.546	0.95
240_P	263_V	1.546	0.95
71_M	75_I	1.521	0.95
140_E	143_N	1.519	0.95
288_R	291_L	1.512	0.94
195_A	199_A	1.495	0.94
203_V	258_P	1.492	0.94
8_L	18_S	1.479	0.94
232_G	284_E	1.462	0.93
174_L	248_S	1.453	0.93
282_V	285_V	1.450	0.93
216_A	220_S	1.439	0.93
77_D	80_I	1.431	0.93
178_H	266_H	1.428	0.93
225_A	229_G	1.416	0.92
158_E	394_K	1.407	0.92
252_K	272_D	1.405	0.92
11_I	18_S	1.396	0.92
175_N	272_D	1.395	0.92
35_G	82_Q	1.371	0.91
382_D	405_K	1.368	0.91
288_R	292_L	1.368	0.91
45_L	49_V	1.368	0.91
179_I	267_I	1.363	0.91
298_M	301_E	1.356	0.91
180_L	264_G	1.353	0.90
294_P	298_M	1.336	0.90
15_A	18_S	1.329	0.90
99_A	102_N	1.329	0.90
255_I	269_K	1.326	0.89
197_S	200_R	1.325	0.89
401_L	404_R	1.323	0.89
112_D	115_R	1.315	0.89
11_I	14_I	1.314	0.89
114_M	240_P	1.309	0.89
13_M	17_T	1.308	0.89
118_L	121_D	1.292	0.88
191_Q	194_E	1.290	0.88
222_D	266_H	1.288	0.88
254_D	269_K	1.269	0.87
159_S	163_Q	1.266	0.87
103_I	109_M	1.260	0.87
289_H	300_D	1.247	0.86
154_P	282_V	1.238	0.86
13_M	18_S	1.233	0.86
197_S	219_H	1.229	0.86
10_G	16_N	1.226	0.85
129_R	133_R	1.223	0.85
197_S	201_A	1.219	0.85
408_E	412_S	1.217	0.85
404_R	407_S	1.215	0.85
158_E	162_Q	1.212	0.85
28_V	36_V	1.207	0.84
204_D	207_R	1.203	0.84
294_P	300_D	1.188	0.84
294_P	297_I	1.176	0.83
46_M	50_K	1.175	0.83
13_M	16_N	1.175	0.83
224_Q	228_G	1.174	0.83
212_F	229_G	1.173	0.83
243_F	285_V	1.171	0.83
214_K	218_A	1.167	0.82
29_A	32_V	1.165	0.82
35_G	85_Q	1.160	0.82
216_A	228_G	1.155	0.82
291_L	294_P	1.153	0.82
380_L	383_T	1.150	0.81
84_G	141_V	1.149	0.81
408_E	411_A	1.147	0.81
111_L	115_R	1.142	0.81
353_F	366_S	1.137	0.81
202_I	206_A	1.133	0.81
42_V	71_M	1.132	0.80
180_L	266_H	1.131	0.80
231_M	234_G	1.127	0.80
288_R	295_S	1.119	0.80
231_M	259_I	1.117	0.80
288_R	294_P	1.112	0.79
173_E	235_R	1.109	0.79
307_L	311_A	1.101	0.79
26_D	38_L	1.100	0.78
141_V	173_E	1.098	0.78
84_G	137_I	1.090	0.78
37_V	198_Q	1.086	0.78
263_V	266_H	1.083	0.77
222_D	228_G	1.083	0.77
342_G	347_D	1.082	0.77
397_A	404_R	1.079	0.77
243_F	268_L	1.078	0.77
178_H	243_F	1.076	0.77
203_V	256_V	1.072	0.77
87_M	141_V	1.064	0.76
35_G	78_Q	1.064	0.76
293_K	296_P	1.053	0.75
178_H	263_V	1.051	0.75
366_S	378_I	1.045	0.75
284_E	288_R	1.042	0.75
321_F	325_A	1.040	0.74
125_Y	129_R	1.038	0.74
259_I	266_H	1.034	0.74
292_L	296_P	1.028	0.74
360_L	380_L	1.026	0.73
243_F	266_H	1.025	0.73
282_V	286_H	1.017	0.73
216_A	222_D	1.006	0.72
60_L	63_D	1.002	0.72
45_L	48_S	1.001	0.72
73_R	77_D	0.998	0.71
344_A	347_D	0.996	0.71
240_P	243_F	0.993	0.71
105_K	139_S	0.993	0.71
161_A	282_V	0.993	0.71
283_T	286_H	0.993	0.71
201_A	205_Q	0.992	0.71
132_I	179_I	0.983	0.70
206_A	215_L	0.978	0.70
209_G	232_G	0.975	0.70
83_M	87_M	0.973	0.69
239_L	243_F	0.972	0.69
42_V	46_M	0.970	0.69
31_V	36_V	0.969	0.69
103_I	106_Q	0.968	0.69
153_L	156_E	0.964	0.69
51_L	139_S	0.960	0.68
179_I	216_A	0.960	0.68
193_N	197_S	0.954	0.68
404_R	408_E	0.953	0.68
91_I	96_L	0.953	0.68
12_A	18_S	0.952	0.68
403_N	407_S	0.949	0.67
178_H	239_L	0.948	0.67
37_V	96_L	0.946	0.67
309_Q	313_D	0.946	0.67
182_P	221_A	0.945	0.67
76_M	80_I	0.944	0.67
156_E	298_M	0.933	0.66
194_E	198_Q	0.923	0.65
189_S	192_V	0.919	0.65
212_F	231_M	0.918	0.65
305_V	309_Q	0.918	0.65
349_F	353_F	0.911	0.64
394_K	401_L	0.911	0.64
313_D	318_K	0.910	0.64
138_I	317_G	0.909	0.64
91_I	136_M	0.909	0.64
259_I	268_L	0.907	0.64
105_K	109_M	0.904	0.64
246_A	259_I	0.903	0.64
108_N	241_G	0.897	0.63
9_L	14_I	0.895	0.63
255_I	258_P	0.893	0.63
201_A	253_G	0.893	0.63
230_Q	233_W	0.890	0.62
26_D	40_S	0.887	0.62
225_A	228_G	0.884	0.62
8_L	12_A	0.879	0.61
91_I	259_I	0.877	0.61
296_P	300_D	0.875	0.61
92_S	110_T	0.873	0.61
152_I	157_V	0.872	0.61
6_T	18_S	0.869	0.61
63_D	215_L	0.865	0.60
356_A	360_L	0.863	0.60
31_V	34_N	0.862	0.60
9_L	19_F	0.861	0.60
175_N	230_Q	0.861	0.60
295_S	303_A	0.860	0.60
196_E	258_P	0.860	0.60
204_D	208_N	0.854	0.59
290_I	300_D	0.852	0.59
203_V	255_I	0.852	0.59
20_A	23_Q	0.845	0.58
6_T	11_I	0.841	0.58
15_A	81_L	0.837	0.58
213_G	269_K	0.834	0.57
96_L	160_L	0.834	0.57
58_Q	64_A	0.833	0.57
179_I	229_G	0.829	0.57
154_P	286_H	0.829	0.57
338_G	341_L	0.827	0.57
118_L	128_Y	0.823	0.56
7_L	17_T	0.821	0.56
386_V	398_Y	0.820	0.56
11_I	153_L	0.819	0.56
9_L	16_N	0.813	0.55
212_F	383_T	0.812	0.55
401_L	406_F	0.811	0.55
66_L	258_P	0.810	0.55
211_D	214_K	0.808	0.55
350_D	353_F	0.808	0.55
224_Q	229_G	0.804	0.55
307_L	314_I	0.802	0.54
304_R	308_E	0.797	0.54
397_A	401_L	0.797	0.54
37_V	102_N	0.795	0.54
175_N	233_W	0.793	0.54
344_A	378_I	0.792	0.53
243_F	247_L	0.790	0.53
212_F	267_I	0.788	0.53
343_W	380_L	0.785	0.53
250_A	257_G	0.784	0.53
203_V	267_I	0.782	0.53
132_I	266_H	0.782	0.53
32_V	75_I	0.782	0.53
101_A	328_F	0.782	0.53
7_L	16_N	0.779	0.52
81_L	138_I	0.778	0.52
91_I	260_R	0.778	0.52
316_S	365_M	0.776	0.52
311_A	316_S	0.776	0.52
404_R	412_S	0.775	0.52
6_T	13_M	0.772	0.52
82_Q	259_I	0.771	0.52
100_I	115_R	0.771	0.52
181_I	202_I	0.770	0.51
216_A	223_Q	0.769	0.51
188_T	191_Q	0.769	0.51
126_N	129_R	0.768	0.51
297_I	300_D	0.768	0.51
100_I	317_G	0.767	0.51
247_L	261_S	0.761	0.51
403_N	408_E	0.759	0.50
267_I	368_P	0.759	0.50
321_F	324_A	0.757	0.50
128_Y	399_R	0.756	0.50
6_T	311_A	0.756	0.50
128_Y	297_I	0.754	0.50
235_R	238_E	0.752	0.50
179_I	220_S	0.744	0.49
307_L	310_I	0.743	0.49
217_I	309_Q	0.743	0.49
100_I	109_M	0.740	0.49
94_E	98_Q	0.740	0.49
302_Q	306_K	0.738	0.48
271_N	322_A	0.737	0.48
107_N	307_L	0.736	0.48
222_D	243_F	0.735	0.48
43_D	67_R	0.733	0.48
45_L	74_L	0.731	0.48
136_M	139_S	0.727	0.47
8_L	19_F	0.727	0.47
8_L	322_A	0.727	0.47
12_A	15_A	0.726	0.47
409_E	414_M	0.719	0.47
33_N	75_I	0.719	0.47
44_G	146_V	0.717	0.46
400_M	407_S	0.716	0.46
108_N	114_M	0.716	0.46
398_Y	412_S	0.716	0.46
84_G	134_K	0.714	0.46
326_K	401_L	0.714	0.46
41_D	45_L	0.713	0.46
193_N	201_A	0.713	0.46
304_R	307_L	0.711	0.46
289_H	297_I	0.708	0.46
131_Q	134_K	0.707	0.46
191_Q	195_A	0.707	0.46
303_A	306_K	0.707	0.46
6_T	276_E	0.704	0.45
210_A	215_L	0.703	0.45
135_E	217_I	0.703	0.45
399_R	402_M	0.702	0.45
6_T	17_T	0.702	0.45
97_D	101_A	0.699	0.45
109_M	114_M	0.698	0.45
212_F	215_L	0.697	0.45
104_A	108_N	0.696	0.45
32_V	37_V	0.695	0.44
396_R	414_M	0.695	0.44
163_Q	237_Q	0.694	0.44
82_Q	86_K	0.694	0.44
151_T	155_Q	0.693	0.44
192_V	196_E	0.693	0.44
26_D	88_G	0.692	0.44
103_I	118_L	0.692	0.44
377_L	397_A	0.692	0.44
274_R	374_G	0.692	0.44
301_E	306_K	0.691	0.44
61_P	64_A	0.688	0.44
245_Q	326_K	0.688	0.44
114_M	118_L	0.688	0.44
34_N	73_R	0.683	0.43
32_V	79_I	0.680	0.43
44_G	48_S	0.680	0.43
325_A	363_G	0.678	0.43
33_N	83_M	0.678	0.43
133_R	140_E	0.677	0.43
27_K	380_L	0.677	0.43
161_A	165_G	0.676	0.43
199_A	202_I	0.674	0.42
49_V	73_R	0.672	0.42
240_P	244_A	0.671	0.42
202_I	241_G	0.671	0.42
373_F	380_L	0.670	0.42
387_D	413_W	0.669	0.42
96_L	136_M	0.669	0.42
293_K	375_W	0.668	0.42
12_A	17_T	0.663	0.41
107_N	117_R	0.658	0.41
362_K	374_G	0.657	0.41
130_N	134_K	0.657	0.41
72_E	211_D	0.656	0.41
411_A	414_M	0.651	0.40
29_A	341_L	0.649	0.40
50_K	140_E	0.649	0.40
387_D	394_K	0.649	0.40
92_S	358_T	0.648	0.40
400_M	404_R	0.647	0.40
216_A	233_W	0.645	0.40
396_R	408_E	0.645	0.40
11_I	148_R	0.644	0.40
105_K	110_T	0.644	0.40
54_A	58_Q	0.644	0.40
250_A	254_D	0.642	0.40
24_V	133_R	0.642	0.40
7_L	20_A	0.642	0.40
128_Y	290_I	0.642	0.40
220_S	233_W	0.639	0.39
230_Q	237_Q	0.639	0.39
134_K	137_I	0.638	0.39
93_D	97_D	0.637	0.39
38_L	243_F	0.634	0.39
385_N	402_M	0.633	0.39
157_V	227_N	0.632	0.39
103_I	113_Q	0.631	0.39
150_I	257_G	0.630	0.39
395_D	398_Y	0.630	0.39
399_R	407_S	0.628	0.38
10_G	13_M	0.628	0.38
46_M	70_I	0.628	0.38
367_A	370_H	0.627	0.38
130_N	133_R	0.624	0.38
5_K	197_S	0.622	0.38
65_T	72_E	0.622	0.38
243_F	256_V	0.621	0.38
310_I	314_I	0.620	0.38
305_V	308_E	0.620	0.38
96_L	295_S	0.617	0.37
88_G	141_V	0.617	0.37
292_L	295_S	0.616	0.37
83_M	256_V	0.616	0.37
18_S	285_V	0.615	0.37
139_S	372_S	0.614	0.37
30_A	82_Q	0.614	0.37
41_D	131_Q	0.612	0.37
176_L	239_L	0.610	0.37
256_V	268_L	0.610	0.37
105_K	143_N	0.610	0.37
112_D	242_I	0.608	0.37
310_I	324_A	0.607	0.36
176_L	270_V	0.607	0.36
146_V	275_G	0.606	0.36
286_H	291_L	0.603	0.36
137_I	141_V	0.601	0.36
10_G	17_T	0.601	0.36
14_I	197_S	0.598	0.36
231_M	263_V	0.596	0.36
151_T	398_Y	0.595	0.35
28_V	106_Q	0.594	0.35
94_E	346_P	0.594	0.35
104_A	107_N	0.593	0.35
237_Q	284_E	0.593	0.35
116_S	120_Y	0.593	0.35
104_A	109_M	0.593	0.35
355_D	380_L	0.592	0.35
190_D	193_N	0.592	0.35
70_I	300_D	0.591	0.35
138_I	381_L	0.591	0.35
249_T	284_E	0.590	0.35
208_N	251_K	0.588	0.35
11_I	166_N	0.588	0.35
360_L	364_Q	0.586	0.35
114_M	128_Y	0.585	0.35
303_A	314_I	0.584	0.35
400_M	403_N	0.584	0.35
196_E	199_A	0.583	0.34
96_L	107_N	0.583	0.34
172_T	273_L	0.579	0.34
104_A	114_M	0.579	0.34
89_V	144_N	0.578	0.34
209_G	215_L	0.578	0.34
153_L	281_S	0.578	0.34
5_K	9_L	0.577	0.34
249_T	345_T	0.576	0.34
10_G	29_A	0.576	0.34
100_I	129_R	0.575	0.34
38_L	48_S	0.574	0.34
250_A	269_K	0.574	0.34
285_V	288_R	0.574	0.34
399_R	403_N	0.574	0.34
70_I	265_F	0.573	0.34
57_R	61_P	0.573	0.34
252_K	397_A	0.571	0.33
293_K	310_I	0.570	0.33
373_F	402_M	0.570	0.33
7_L	11_I	0.570	0.33
38_L	87_M	0.570	0.33
321_F	329_S	0.569	0.33
41_D	74_L	0.569	0.33
258_P	305_V	0.568	0.33
378_I	383_T	0.566	0.33
140_E	156_E	0.565	0.33
9_L	108_N	0.565	0.33
206_A	255_I	0.565	0.33
42_V	67_R	0.565	0.33
38_L	88_G	0.565	0.33
362_K	366_S	0.563	0.33
224_Q	227_N	0.562	0.33
154_P	306_K	0.562	0.33
297_I	301_E	0.562	0.33
19_F	22_P	0.560	0.33
155_Q	259_I	0.559	0.32
364_Q	379_E	0.558	0.32
146_V	149_R	0.558	0.32
95_Q	144_N	0.558	0.32
155_Q	159_S	0.558	0.32
118_L	122_G	0.557	0.32
93_D	158_E	0.557	0.32
126_N	352_A	0.556	0.32
96_L	258_P	0.555	0.32
118_L	365_M	0.554	0.32
92_S	136_M	0.554	0.32
282_V	294_P	0.554	0.32
134_K	270_V	0.554	0.32
382_D	385_N	0.553	0.32
48_S	52_N	0.553	0.32
97_D	110_T	0.552	0.32
206_A	209_G	0.552	0.32
87_M	161_A	0.552	0.32
295_S	299_T	0.550	0.32
107_N	114_M	0.550	0.32
306_K	310_I	0.550	0.32
29_A	149_R	0.549	0.32
237_Q	247_L	0.549	0.32
305_V	314_I	0.549	0.32
179_I	233_W	0.549	0.32
81_L	366_S	0.545	0.31
160_L	183_L	0.545	0.31
208_N	214_K	0.544	0.31
152_I	351_P	0.543	0.31
398_Y	401_L	0.543	0.31
372_S	379_E	0.541	0.31
176_L	208_N	0.540	0.31
181_I	198_Q	0.539	0.31
35_G	92_S	0.539	0.31
354_R	358_T	0.539	0.31
399_R	405_K	0.538	0.31
173_E	247_L	0.537	0.31
75_I	354_R	0.537	0.31
156_E	328_F	0.536	0.31
33_N	314_I	0.536	0.31
14_I	166_N	0.536	0.31
42_V	70_I	0.536	0.31
164_V	168_N	0.535	0.30
250_A	343_W	0.534	0.30
129_R	311_A	0.531	0.30
91_I	95_Q	0.531	0.30
50_K	137_I	0.530	0.30
107_N	110_T	0.530	0.30
359_R	397_A	0.529	0.30
259_I	265_F	0.529	0.30
202_I	267_I	0.528	0.30
52_N	227_N	0.527	0.30
167_Q	254_D	0.526	0.30
348_I	353_F	0.523	0.30
81_L	134_K	0.523	0.30
88_G	143_N	0.523	0.30
36_V	81_L	0.522	0.29
58_Q	63_D	0.522	0.29
74_L	154_P	0.521	0.29
398_Y	402_M	0.520	0.29
154_P	327_E	0.519	0.29
75_I	298_M	0.519	0.29
345_T	348_I	0.519	0.29
98_Q	265_F	0.518	0.29
190_D	312_A	0.518	0.29
232_G	272_D	0.517	0.29
21_A	267_I	0.516	0.29
25_V	355_D	0.515	0.29
132_I	136_M	0.515	0.29
81_L	115_R	0.514	0.29
166_N	170_A	0.513	0.29
295_S	310_I	0.512	0.29
209_G	274_R	0.511	0.29
138_I	178_H	0.511	0.29
57_R	89_V	0.510	0.29
133_R	316_S	0.509	0.28
8_L	16_N	0.509	0.28
252_K	270_V	0.508	0.28
242_I	268_L	0.508	0.28
230_Q	272_D	0.507	0.28
244_A	377_L	0.506	0.28
343_W	346_P	0.506	0.28
71_M	344_A	0.506	0.28
131_Q	219_H	0.506	0.28
94_E	344_A	0.506	0.28
91_I	249_T	0.505	0.28
396_R	405_K	0.505	0.28
155_Q	284_E	0.504	0.28
303_A	307_L	0.503	0.28
209_G	221_A	0.502	0.28
66_L	70_I	0.502	0.28
116_S	312_A	0.501	0.28
240_P	268_L	0.500	0.28

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1m5yA	1	0.9042	100	0.247	Contact Map
3nrkA	3	0.7009	100	0.46	Contact Map
3rgcA	2	0.5864	100	0.508	Contact Map
4wo7A	2	0.5888	100	0.537	Contact Map
3rfwA	2	0.5701	100	0.544	Contact Map
1yw5A	1	0.3645	99.9	0.688	Contact Map
3tc5A	1	0.3131	99.9	0.725	Contact Map
3i6cA	1	0.2407	99.9	0.733	Contact Map
2pv1A	1	0.2407	99.9	0.736	Contact Map
2mntA	1	0.2383	99.9	0.738	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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