GREMLIN Database
FLGC - Flagellar basal-body rod protein FlgC
UniProt: P0ABX2 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG14267
Length: 134 (130)
Sequences: 1713 (1161)
Seq/√Len: 101.8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
76_L92_K4.0341.00
128_K131_T3.4861.00
76_L86_D3.0461.00
97_D100_G2.9751.00
74_D92_K2.9311.00
43_R74_D2.6181.00
36_G40_Q2.6021.00
50_Q65_A2.5821.00
86_D92_K2.5811.00
23_V47_V2.4991.00
34_V84_L2.3011.00
79_E93_M2.1671.00
50_Q63_K2.0481.00
16_A49_F2.0071.00
79_E82_N2.0031.00
17_Q20_R1.9931.00
28_L98_V1.9331.00
10_A118_V1.8931.00
76_L90_Y1.8841.00
41_P74_D1.8561.00
26_S45_K1.8161.00
35_T84_L1.8051.00
76_L88_K1.7191.00
19_Q67_V1.7011.00
78_Y90_Y1.7001.00
5_N8_D1.6101.00
46_Q68_I1.6041.00
46_Q104_N1.5511.00
21_L105_T1.5461.00
24_A105_T1.5441.00
77_V93_M1.4741.00
43_R69_E1.4671.00
102_M105_T1.4641.00
10_A13_A1.4411.00
17_Q111_S1.4221.00
44_A70_S1.3530.99
45_K69_E1.3260.99
36_G39_G1.2860.99
19_Q47_V1.2680.99
6_I122_V1.2470.99
17_Q107_S1.2360.99
48_V68_I1.2320.99
10_A119_L1.2260.99
12_S61_G1.2150.99
3_L122_V1.2040.99
112_Y129_T1.2010.99
117_E120_N1.2000.99
110_R113_Q1.1990.99
16_A62_V1.1820.98
20_R107_S1.1760.98
72_A100_G1.1760.98
44_A101_E1.1610.98
75_K93_M1.1560.98
41_P92_K1.1420.98
70_S95_N1.1370.98
28_L52_N1.1290.98
51_V60_G1.0920.97
52_N63_K1.0860.97
6_I118_V1.0800.97
41_P94_P1.0730.97
121_T125_M1.0730.97
40_Q43_R1.0580.97
40_Q92_K1.0340.96
14_L119_L1.0200.96
74_D96_V0.9860.95
28_L118_V0.9760.95
4_L126_M0.9600.95
25_A118_V0.9520.94
20_R104_N0.9470.94
122_V126_M0.9330.94
126_M129_T0.9260.93
116_V120_N0.9230.93
125_M129_T0.9160.93
82_N87_A0.9080.93
10_A14_L0.9080.93
23_V67_V0.8890.92
17_Q32_D0.8860.92
47_V64_V0.8860.92
7_F119_L0.8730.91
48_V65_A0.8700.91
77_V103_V0.8680.91
22_N26_S0.8620.91
13_A28_L0.8590.91
14_L103_V0.8550.90
79_E91_V0.8530.90
49_F62_V0.8490.90
117_E123_K0.8450.90
35_T38_D0.8390.90
54_A58_A0.8320.89
113_Q117_E0.7980.87
13_A121_T0.7950.87
31_A96_V0.7920.87
113_Q131_T0.7920.87
109_S121_T0.7810.86
14_L21_L0.7750.86
120_N123_K0.7750.86
13_A115_N0.7610.85
33_S51_V0.7590.84
49_F53_A0.7570.84
13_A76_L0.7470.83
8_D112_Y0.7470.83
35_T123_K0.7430.83
11_G113_Q0.7410.83
19_Q22_N0.7270.82
99_V106_M0.7230.81
98_V117_E0.7170.81
120_N128_K0.7160.81
52_N55_P0.7090.80
23_V26_S0.7030.80
44_A95_N0.7020.79
107_S111_S0.6990.79
119_L132_L0.6890.78
37_P40_Q0.6820.77
54_A57_A0.6790.77
102_M106_M0.6790.77
50_Q66_D0.6740.77
34_V93_M0.6710.76
43_R71_Q0.6700.76
19_Q64_V0.6670.76
77_V91_V0.6640.76
36_G41_P0.6630.75
34_V82_N0.6580.75
6_I9_I0.6530.74
47_V118_V0.6480.74
50_Q54_A0.6480.74
71_Q78_Y0.6470.74
7_F132_L0.6440.73
119_L122_V0.6350.72
23_V74_D0.6350.72
105_T108_A0.6340.72
26_S42_Y0.6330.72
111_S114_A0.6300.72
106_M122_V0.6290.72
100_G104_N0.6270.71
98_V124_S0.6250.71
10_A122_V0.6200.71
5_N53_A0.6200.71
3_L14_L0.6060.69
44_A104_N0.6050.69
19_Q23_V0.6040.69
41_P84_L0.6020.68
73_P98_V0.6010.68
95_N111_S0.6000.68
15_T19_Q0.5990.68
12_S62_V0.5980.68
68_I131_T0.5960.68
129_T132_L0.5910.67
51_V61_G0.5910.67
124_S128_K0.5880.66
74_D94_P0.5790.65
8_D28_L0.5770.65
78_Y117_E0.5750.65
3_L6_I0.5720.64
99_V103_V0.5720.64
63_K87_A0.5700.64
124_S127_L0.5640.63
110_R125_M0.5610.63
18_S113_Q0.5610.63
3_L63_K0.5590.63
71_Q92_K0.5570.62
95_N101_E0.5560.62
9_I61_G0.5550.62
64_V91_V0.5540.62
112_Y119_L0.5530.62
41_P93_M0.5530.62
18_S35_T0.5480.61
13_A17_Q0.5470.61
11_G68_I0.5450.61
40_Q84_L0.5400.60
5_N107_S0.5400.60
25_A125_M0.5400.60
39_G92_K0.5350.59
43_R63_K0.5350.59
7_F122_V0.5330.59
11_G103_V0.5320.59
34_V130_L0.5310.59
13_A26_S0.5300.59
118_V130_L0.5290.58
7_F126_M0.5270.58
32_D94_P0.5270.58
12_S16_A0.5240.58
73_P95_N0.5240.58
42_Y45_K0.5230.58
99_V104_N0.5210.57
32_D93_M0.5190.57
15_T116_V0.5180.57
18_S22_N0.5160.57
22_N99_V0.5160.57
24_A106_M0.5150.56
72_A95_N0.5100.56
79_E127_L0.5080.55
31_A98_V0.5080.55
57_A61_G0.5070.55
32_D118_V0.5030.55
13_A114_A0.5000.54
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3a69A 3 0.5821 99.7 0.649 Contact Map
4ut1A 1 0.6269 98.9 0.768 Contact Map
1wlgA 2 0.5746 4.1 0.957 Contact Map
1ucuA 1 0.6194 3.7 0.958 Contact Map
4dt4A 1 0.7239 2.7 0.961 Contact Map
3txsA 5 0.6119 2.4 0.962 Contact Map
2c7fA 2 0.4925 2.4 0.962 Contact Map
4k0mC 1 0.597 2.3 0.962 Contact Map
3k8wA 1 0.291 2.1 0.963 Contact Map
1w85A 2 0.5149 2 0.963 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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