GREMLIN Database
NAPB - Periplasmic nitrate reductase, electron transfer subunit
UniProt: P0ABL3 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG12061
Length: 149 (131)
Sequences: 345 (236)
Seq/√Len: 20.7

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
66_M128_V4.1881.00
100_I116_V2.6060.98
84_L116_V2.5360.98
62_N112_V2.4870.98
76_V124_L2.4590.97
49_M129_P2.4030.97
62_N102_P2.3200.96
40_S44_E2.2490.95
79_N121_Y2.1250.94
33_F36_S2.1060.93
18_A25_V1.9720.91
107_D111_K1.9600.91
59_N93_R1.9070.89
56_M66_M1.8870.89
58_L112_V1.8780.89
62_N111_K1.8610.88
109_D119_R1.8510.88
107_D117_A1.8460.88
103_T106_M1.8180.87
59_N106_M1.7910.86
134_A137_V1.6990.83
29_N36_S1.6260.80
91_S94_T1.6250.80
41_G44_E1.6220.80
62_N114_A1.5840.78
22_S26_W1.5720.78
74_Y101_S1.5520.77
61_V99_R1.5110.75
19_L27_A1.4440.71
105_F131_A1.4390.71
92_Y99_R1.3880.68
71_V129_P1.3810.68
82_R85_Q1.3620.67
99_R102_P1.3190.64
94_T105_F1.3120.64
15_A18_A1.3120.64
61_V98_P1.3110.64
23_G28_A1.2990.63
23_G27_A1.2950.63
31_V39_V1.2740.61
51_K72_E1.2690.61
71_V102_P1.2670.61
50_P66_M1.2590.61
129_P133_T1.2520.60
24_A27_A1.2440.60
38_E43_Q1.2140.58
16_M22_S1.2100.57
92_Y144_S1.1970.57
60_Y68_P1.1800.55
62_N99_R1.1640.54
92_Y95_T1.1590.54
15_A25_V1.1520.54
95_T124_L1.1440.53
132_D138_G1.1440.53
107_D131_A1.1170.51
105_F118_P1.1140.51
20_V138_G1.1090.51
133_T136_I1.1080.51
70_S75_Q1.1040.50
133_T137_V1.0930.50
63_Q128_V1.0850.49
60_Y101_S1.0810.49
35_Q77_T1.0720.48
38_E129_P1.0630.48
42_T129_P1.0610.48
22_S27_A1.0600.48
60_Y137_V1.0400.46
61_V114_A1.0340.46
106_M110_G1.0170.45
77_T145_K1.0100.44
58_L99_R1.0040.44
31_V34_S0.9940.43
66_M114_A0.9870.43
21_V24_A0.9860.43
89_V143_P0.9850.43
89_V99_R0.9810.42
21_V26_W0.9790.42
100_I115_E0.9780.42
108_S119_R0.9710.42
106_M112_V0.9690.42
80_T85_Q0.9660.41
58_L62_N0.9610.41
39_V44_E0.9460.40
30_G33_F0.9260.39
70_S84_L0.9250.39
32_D38_E0.9250.39
114_A144_S0.8870.36
60_Y103_T0.8820.36
50_P53_Q0.8800.36
66_M136_I0.8780.36
103_T116_V0.8770.36
51_K62_N0.8770.36
62_N89_V0.8760.36
47_I115_E0.8700.35
20_V23_G0.8620.35
98_P143_P0.8510.34
108_S113_G0.8140.32
53_Q76_V0.8090.32
88_G98_P0.8090.32
29_N33_F0.8070.32
80_T90_E0.8050.32
18_A134_A0.8010.31
61_V143_P0.7980.31
84_L140_T0.7980.31
21_V27_A0.7840.30
88_G142_T0.7820.30
28_A33_F0.7810.30
20_V25_V0.7760.30
48_R52_E0.7760.30
53_Q143_P0.7640.29
78_T131_A0.7620.29
71_V120_R0.7590.29
26_W132_D0.7580.29
50_P58_L0.7520.29
23_G26_W0.7510.29
79_N96_G0.7450.28
118_P122_F0.7440.28
18_A23_G0.7380.28
52_E58_L0.7330.28
66_M89_V0.7280.27
71_V97_A0.7270.27
98_P115_E0.7250.27
79_N90_E0.7120.27
88_G105_F0.7090.26
55_R98_P0.7070.26
22_S30_G0.7060.26
58_L93_R0.6990.26
59_N143_P0.6980.26
24_A28_A0.6960.26
80_T115_E0.6950.26
39_V107_D0.6910.26
42_T71_V0.6810.25
79_N118_P0.6810.25
20_V26_W0.6800.25
117_A122_F0.6800.25
61_V89_V0.6780.25
60_Y71_V0.6780.25
46_A115_E0.6770.25
52_E135_P0.6740.25
16_M21_V0.6650.24
72_E144_S0.6640.24
67_I71_V0.6590.24
75_Q89_V0.6510.24
101_S120_R0.6480.23
99_R133_T0.6420.23
75_Q122_F0.6390.23
30_G38_E0.6360.23
55_R60_Y0.6310.23
35_Q108_S0.6300.23
77_T111_K0.6280.23
58_L143_P0.6170.22
24_A60_Y0.6160.22
15_A84_L0.6150.22
92_Y102_P0.6130.22
32_D36_S0.6130.22
66_M98_P0.6120.22
97_A119_R0.6090.22
85_Q94_T0.6090.22
29_N38_E0.6070.22
47_I98_P0.6060.22
97_A109_D0.6000.21
36_S39_V0.5960.21
64_P128_V0.5960.21
93_R142_T0.5900.21
89_V112_V0.5870.21
82_R96_G0.5780.20
39_V109_D0.5750.20
59_N145_K0.5750.20
102_P114_A0.5740.20
116_V135_P0.5740.20
48_R129_P0.5740.20
22_S31_V0.5710.20
108_S117_A0.5660.20
40_S47_I0.5500.19
90_E144_S0.5440.19
16_M19_L0.5430.19
67_I140_T0.5430.19
16_M20_V0.5350.19
61_V102_P0.5350.19
19_L24_A0.5340.18
16_M137_V0.5320.18
135_P139_N0.5310.18
108_S120_R0.5300.18
29_N144_S0.5260.18
35_Q136_I0.5250.18
91_S100_I0.5220.18
63_Q74_Y0.5200.18
42_T50_P0.5170.18
82_R102_P0.5150.18
18_A109_D0.5150.18
57_P93_R0.5070.17
15_A24_A0.5060.17
28_A142_T0.5060.17
88_G145_K0.5040.17
79_N124_L0.5010.17
71_V100_I0.5000.17
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3ml1B 1 0.7114 100 0.215 Contact Map
1ogyB 4 0.8054 100 0.231 Contact Map
1jniA 1 0.4161 100 0.376 Contact Map
1oahA 2 0.7785 94.6 0.905 Contact Map
2ozyA 1 0.3691 92.3 0.913 Contact Map
2j7aA 5 0.8322 91.4 0.915 Contact Map
2e84A 1 0.7517 87.9 0.921 Contact Map
1z1nX 1 0.604 86.5 0.922 Contact Map
2j7aC 2 0.5235 86.5 0.922 Contact Map
3ubrA 2 0.8523 85.4 0.924 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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