GREMLIN Database
CSGB - Minor curlin subunit
UniProt: P0ABK7 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG12621
Length: 151 (117)
Sequences: 458 (409)
Seq/√Len: 37.8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
45_Q67_L3.9481.00
124_A146_I3.2201.00
111_N133_K2.7461.00
115_I137_V2.6811.00
106_Q128_Q2.4041.00
91_A113_A2.3621.00
95_Q117_Q2.3541.00
71_V93_I2.3021.00
49_I71_V2.1740.99
73_Q95_Q2.1730.99
60_L82_I2.1240.99
84_Q106_Q2.0830.99
117_Q139_Q2.0200.99
126_I148_V1.9320.98
93_I115_I1.8980.98
84_Q128_Q1.8770.98
102_A124_A1.8170.97
73_Q117_Q1.7470.97
49_I60_L1.7140.96
104_I113_A1.6510.95
89_N111_N1.6280.95
62_Q84_Q1.5700.94
47_A69_A1.5610.94
64_G108_A1.5210.93
80_A102_A1.5030.93
100_N122_N1.4550.91
34_A42_S1.3980.90
60_L69_A1.3920.89
95_Q139_Q1.3740.89
104_I126_I1.3630.88
80_A124_A1.3500.88
113_A135_A1.3460.88
78_N100_N1.3360.87
73_Q139_Q1.3180.87
51_Q73_Q1.3110.86
97_G100_N1.2990.86
62_Q128_Q1.2770.85
82_I104_I1.2470.83
34_A40_K1.2430.83
58_A80_A1.2280.82
69_A91_A1.2000.81
97_G119_G1.1930.80
62_Q106_Q1.1900.80
141_Q144_M1.1890.80
102_A115_I1.1630.79
78_N122_N1.1300.77
91_A104_I1.1270.76
113_A126_I1.1160.76
54_T76_S1.1160.76
51_Q117_Q1.1030.75
130_G133_K1.0880.74
108_A111_N1.0870.74
128_Q150_Q1.0850.74
126_I137_V1.0590.72
122_N144_M1.0540.71
82_I93_I1.0540.71
124_A137_V1.0430.71
53_G119_G1.0190.69
127_T149_T1.0090.68
106_Q150_Q1.0020.68
49_I93_I1.0020.68
82_I91_A1.0010.67
93_I137_V1.0000.67
56_N78_N0.9960.67
56_N100_N0.9890.67
75_G119_G0.9730.65
78_N97_G0.9640.65
47_A91_A0.9640.65
120_S142_S0.9520.64
80_A93_I0.9490.63
64_G67_L0.9390.62
81_K101_D0.9240.61
102_A117_Q0.9230.61
108_A130_G0.9080.60
58_A71_V0.9060.60
75_G97_G0.8890.58
51_Q95_Q0.8860.58
71_V82_I0.8820.58
53_G75_G0.8700.57
64_G119_G0.8700.57
124_A139_Q0.8680.56
102_A146_I0.8590.56
126_I135_A0.8540.55
115_I148_V0.8450.54
81_K103_S0.8430.54
71_V104_I0.8350.53
46_A90_L0.8200.52
47_A60_L0.8120.51
49_I80_A0.8080.51
132_Q142_S0.8060.51
49_I58_A0.7970.50
64_G130_G0.7950.50
53_G95_Q0.7850.49
91_A135_A0.7810.49
93_I102_A0.7770.48
77_S99_A0.7730.48
89_N133_K0.7720.48
76_S120_S0.7650.47
86_G130_G0.7570.46
80_A87_D0.7510.46
128_Q135_A0.7390.45
39_S42_S0.7380.45
67_L70_V0.7330.44
80_A146_I0.7330.44
64_G86_G0.7250.44
59_Q81_K0.7220.43
47_A113_A0.7210.43
112_T135_A0.7090.42
86_G108_A0.7010.42
100_N119_G0.6910.41
34_A38_L0.6900.41
43_F120_S0.6870.40
51_Q139_Q0.6860.40
91_A109_Y0.6850.40
102_A137_V0.6780.40
71_V115_I0.6770.40
78_N144_M0.6760.39
53_G139_Q0.6720.39
91_A124_A0.6690.39
38_L115_I0.6680.39
58_A102_A0.6640.38
71_V126_I0.6630.38
35_V48_I0.6620.38
116_I136_I0.6600.38
114_M138_V0.6560.38
56_N75_G0.6430.37
123_K147_R0.6430.37
49_I124_A0.6410.36
51_Q58_A0.6370.36
122_N141_Q0.6360.36
117_Q137_V0.6330.36
80_A91_A0.6300.36
135_A148_V0.6300.36
76_S98_S0.6260.35
37_E40_K0.6210.35
56_N98_S0.6130.34
48_I72_A0.6110.34
104_I115_I0.6050.34
61_R81_K0.5960.33
49_I137_V0.5950.33
57_S60_L0.5940.33
72_A137_V0.5820.32
97_G122_N0.5820.32
98_S120_S0.5800.32
66_K96_A0.5780.31
41_S44_N0.5770.31
137_V148_V0.5650.30
50_G123_K0.5620.30
92_Y101_D0.5600.30
139_Q146_I0.5600.30
121_G142_S0.5570.30
95_Q102_A0.5540.30
66_K88_Y0.5540.30
79_R101_D0.5540.30
114_M136_I0.5530.30
84_Q113_A0.5430.29
69_A113_A0.5400.29
84_Q150_Q0.5360.28
68_L92_Y0.5360.28
39_S61_R0.5350.28
57_S77_S0.5350.28
72_A114_M0.5340.28
115_I126_I0.5330.28
44_N79_R0.5310.28
65_S85_T0.5260.28
54_T65_S0.5220.27
48_I74_E0.5220.27
103_S125_N0.5160.27
72_A98_S0.5140.27
67_L89_N0.5130.27
65_S87_D0.5080.26
133_K144_M0.5040.26
105_S130_G0.5020.26
87_D131_T0.5010.26
95_Q120_S0.5000.26
59_Q101_D0.5000.26
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3zbiC 1 0.1589 7.1 0.926 Contact Map
1dbgA 1 0.6821 5 0.931 Contact Map
2jnaA 2 0.6225 4.7 0.932 Contact Map
2vdaB 1 0.1457 4.3 0.933 Contact Map
2dckA 1 0.7351 4.1 0.934 Contact Map
2nocA 1 0.6159 3.6 0.935 Contact Map
4wrtC 1 0 2.1 0.943 Contact Map
4cvhA 2 0.3377 2 0.944 Contact Map
1m56D 1 0.1391 1.8 0.945 Contact Map
4peuA 1 0.6689 1.8 0.945 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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