CYSK - ECOLI - GREMLIN Contacts

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CYSK - Cysteine synthase A

UniProt:	P0ABK5	Sequences: MSKIFEDNSLTIGHTPLVRLNRIGNGRILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPGVELVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASNPEKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFIAGVGTGGTLTGVSRYIKGTKGKTDLISVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPANLDLKLVDKVIGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFTNKNIVVILPSSGERYLSTALFADLFTEKELQQ	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG10192
Length:	323 (284)
Sequences:	21327 (11067)
Seq/√Len:	656.7

ECOLI - CYSK CYSM ILVA TDCB DPAL SDHD TRPB DCYD THRC
BACSU - MCCA CYSM ILVA CYSK THRC TRPB SDHD
HALSA - Q9HNH6 Q9HQ70 Q9HRU4 Q9HMQ7 Q9HNH0 TRPB Q9HRP3
SULSO - Q980P1 Q97ZL6 TRPB2 TRPB1 Q97ZT5 Q980F2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
81_A	88_L	4.026	1.00
27_R	294_N	3.459	1.00
126_K	129_E	3.315	1.00
19_R	27_R	3.100	1.00
254_E	283_K	2.698	1.00
161_I	296_V	2.599	1.00
98_I	102_K	2.593	1.00
261_R	265_E	2.589	1.00
91_T	130_I	2.587	1.00
171_V	201_V	2.484	1.00
52_D	56_R	2.474	1.00
87_K	110_N	2.470	1.00
134_N	138_Y	2.470	1.00
14_H	163_E	2.416	1.00
64_E	89_T	2.402	1.00
206_T	251_T	2.376	1.00
199_I	246_K	2.323	1.00
54_E	86_Y	2.315	1.00
129_E	133_S	2.312	1.00
52_D	148_A	2.261	1.00
94_E	115_E	2.259	1.00
89_T	110_N	2.192	1.00
290_F	293_K	2.106	1.00
14_H	164_D	2.072	1.00
51_W	84_R	2.060	1.00
277_A	297_V	2.046	1.00
186_S	243_L	2.031	1.00
29_L	294_N	2.020	1.00
207_D	252_N	1.954	1.00
251_T	254_E	1.949	1.00
89_T	112_V	1.944	1.00
145_S	237_A	1.935	1.00
159_P	188_Y	1.935	1.00
193_K	198_L	1.929	1.00
154_E	191_G	1.916	1.00
17_L	296_V	1.902	1.00
54_E	57_G	1.886	1.00
172_F	189_I	1.853	1.00
186_S	200_S	1.836	1.00
130_I	134_N	1.819	1.00
201_V	246_K	1.786	1.00
176_V	202_A	1.783	1.00
203_V	280_A	1.782	1.00
262_L	270_A	1.774	1.00
128_E	132_A	1.763	1.00
38_S	79_Y	1.730	1.00
209_P	213_Q	1.662	1.00
154_E	187_R	1.658	1.00
169_V	296_V	1.656	1.00
142_Q	145_S	1.637	1.00
29_L	165_T	1.631	1.00
246_K	287_D	1.620	1.00
19_R	29_L	1.620	1.00
258_T	279_A	1.610	1.00
170_D	294_N	1.603	1.00
262_L	278_V	1.593	1.00
190_K	245_D	1.591	1.00
170_D	293_K	1.573	1.00
261_R	282_L	1.572	1.00
172_F	185_V	1.563	1.00
182_L	244_V	1.555	1.00
230_I	276_A	1.548	1.00
69_T	74_G	1.546	1.00
101_R	113_L	1.486	1.00
102_K	105_K	1.476	1.00
54_E	84_R	1.475	1.00
19_R	24_G	1.475	1.00
158_G	185_V	1.469	1.00
30_A	299_L	1.465	1.00
47_A	51_W	1.458	1.00
162_W	192_T	1.447	1.00
171_V	290_F	1.424	1.00
134_N	137_K	1.410	1.00
101_R	105_K	1.391	1.00
171_V	293_K	1.389	1.00
158_G	189_I	1.373	1.00
49_M	146_N	1.368	1.00
173_I	284_L	1.362	1.00
64_E	87_K	1.340	1.00
131_V	140_L	1.334	1.00
26_G	261_R	1.331	1.00
258_T	282_L	1.329	1.00
112_V	126_K	1.304	1.00
119_G	122_G	1.292	1.00
171_V	199_I	1.288	1.00
173_I	203_V	1.272	1.00
104_L	109_A	1.248	1.00
124_I	128_E	1.248	1.00
22_R	266_E	1.244	1.00
270_A	299_L	1.241	1.00
98_I	101_R	1.236	1.00
212_A	249_G	1.231	1.00
92_M	104_L	1.231	1.00
187_R	240_D	1.227	1.00
254_E	279_A	1.227	1.00
51_W	55_K	1.227	1.00
165_T	169_V	1.226	1.00
279_A	283_K	1.226	1.00
158_G	188_Y	1.225	1.00
52_D	55_K	1.225	1.00
189_I	198_L	1.224	1.00
284_L	287_D	1.210	1.00
283_K	286_E	1.197	1.00
182_L	200_S	1.193	1.00
258_T	278_V	1.187	1.00
20_L	30_A	1.183	1.00
74_G	104_L	1.181	1.00
95_T	116_G	1.175	1.00
50_I	65_L	1.172	1.00
188_Y	192_T	1.163	1.00
18_V	32_V	1.163	1.00
206_T	249_G	1.161	1.00
162_W	188_Y	1.154	1.00
91_T	126_K	1.150	1.00
274_S	299_L	1.149	1.00
159_P	163_E	1.140	1.00
48_N	155_K	1.140	1.00
17_L	165_T	1.139	1.00
257_S	261_R	1.139	1.00
26_G	265_E	1.137	1.00
121_K	125_Q	1.132	1.00
101_R	111_L	1.124	1.00
16_P	35_R	1.123	1.00
254_E	257_S	1.117	1.00
94_E	116_G	1.108	1.00
126_K	130_I	1.106	1.00
209_P	249_G	1.102	1.00
17_L	161_I	1.097	1.00
168_Q	294_N	1.089	1.00
213_Q	217_G	1.088	1.00
250_I	279_A	1.076	1.00
48_N	152_I	1.075	1.00
125_Q	129_E	1.067	1.00
221_K	225_H	1.064	1.00
227_I	255_A	1.061	1.00
56_R	148_A	1.051	1.00
253_E	257_S	1.043	1.00
202_A	247_V	1.038	1.00
183_T	238_N	1.036	1.00
248_I	280_A	1.036	1.00
65_L	81_A	1.033	1.00
201_V	248_I	1.032	1.00
182_L	202_A	1.030	1.00
125_Q	128_E	1.029	1.00
153_H	157_T	1.029	1.00
46_G	76_A	1.028	1.00
48_N	52_D	1.024	1.00
127_A	131_V	1.017	1.00
263_M	269_L	1.016	1.00
209_P	220_I	1.010	1.00
129_E	132_A	1.008	1.00
48_N	51_W	1.007	1.00
161_I	169_V	1.007	1.00
165_T	296_V	1.004	1.00
50_I	84_R	1.002	1.00
171_V	295_I	0.995	1.00
92_M	113_L	0.993	1.00
66_V	138_Y	0.990	1.00
82_A	88_L	0.984	1.00
122_G	125_Q	0.980	1.00
120_M	123_A	0.978	1.00
49_M	141_L	0.973	1.00
260_R	264_E	0.967	1.00
209_P	212_A	0.955	1.00
22_R	25_N	0.952	1.00
21_N	25_N	0.951	1.00
76_A	80_V	0.948	1.00
77_L	88_L	0.944	1.00
50_I	80_V	0.943	1.00
28_I	281_A	0.941	1.00
128_E	131_V	0.940	1.00
79_Y	107_L	0.934	1.00
105_K	110_N	0.927	1.00
78_A	109_A	0.923	1.00
162_W	193_K	0.921	1.00
259_A	275_G	0.921	1.00
53_A	57_G	0.916	1.00
66_V	130_I	0.915	1.00
199_I	245_D	0.908	1.00
22_R	265_E	0.907	1.00
226_K	256_I	0.903	1.00
185_V	298_I	0.903	1.00
248_I	283_K	0.902	1.00
67_E	90_L	0.895	1.00
176_V	182_L	0.894	1.00
173_I	281_A	0.892	1.00
154_E	188_Y	0.885	1.00
289_S	293_K	0.881	1.00
281_A	297_V	0.876	1.00
130_I	133_S	0.871	1.00
15_T	36_N	0.867	1.00
66_V	127_A	0.866	1.00
270_A	274_S	0.863	1.00
278_V	299_L	0.862	1.00
277_A	300_P	0.861	1.00
159_P	192_T	0.853	1.00
11_T	47_A	0.851	1.00
64_E	138_Y	0.851	1.00
174_A	185_V	0.847	1.00
269_L	303_G	0.847	1.00
89_T	134_N	0.845	1.00
53_A	139_L	0.845	1.00
150_P	238_N	0.841	1.00
89_T	130_I	0.837	1.00
32_V	299_L	0.836	1.00
188_Y	191_G	0.834	1.00
230_I	273_S	0.833	1.00
212_A	247_V	0.821	1.00
27_R	292_N	0.819	1.00
199_I	293_K	0.818	1.00
274_S	300_P	0.817	1.00
173_I	280_A	0.813	1.00
173_I	201_V	0.805	1.00
20_L	278_V	0.797	1.00
131_V	138_Y	0.796	1.00
258_T	261_R	0.794	1.00
171_V	284_L	0.791	1.00
225_H	231_G	0.791	1.00
75_I	104_L	0.789	1.00
89_T	138_Y	0.789	1.00
102_K	106_A	0.787	1.00
226_K	252_N	0.778	1.00
187_R	191_G	0.771	1.00
176_V	247_V	0.770	1.00
157_T	185_V	0.769	1.00
152_I	155_K	0.767	1.00
169_V	198_L	0.759	1.00
155_K	159_P	0.757	1.00
278_V	297_V	0.753	1.00
105_K	113_L	0.750	1.00
142_Q	146_N	0.748	1.00
88_L	109_A	0.747	1.00
205_P	230_I	0.745	1.00
162_W	189_I	0.743	1.00
63_V	87_K	0.743	1.00
64_E	134_N	0.742	1.00
157_T	181_T	0.741	1.00
82_A	107_L	0.734	1.00
48_N	148_A	0.733	1.00
282_L	286_E	0.733	1.00
175_G	300_P	0.731	1.00
66_V	131_V	0.730	1.00
211_I	247_V	0.730	1.00
30_A	297_V	0.729	1.00
54_E	58_V	0.728	1.00
100_R	228_Q	0.728	1.00
157_T	298_I	0.727	1.00
79_Y	83_A	0.725	1.00
20_L	266_E	0.725	1.00
150_P	187_R	0.723	1.00
210_V	233_G	0.722	1.00
58_V	86_Y	0.721	1.00
157_T	161_I	0.721	1.00
127_A	140_L	0.720	1.00
165_T	294_N	0.718	1.00
241_L	244_V	0.717	1.00
32_V	35_R	0.716	1.00
65_L	86_Y	0.715	1.00
63_V	137_K	0.710	1.00
75_I	103_L	0.710	1.00
185_V	189_I	0.710	1.00
65_L	141_L	0.708	1.00
287_D	290_F	0.706	1.00
128_E	140_L	0.705	1.00
68_P	120_M	0.705	1.00
24_G	27_R	0.703	1.00
147_P	150_P	0.700	1.00
38_S	107_L	0.697	1.00
211_I	235_I	0.697	1.00
68_P	140_L	0.696	1.00
283_K	287_D	0.694	1.00
162_W	167_G	0.693	1.00
162_W	166_D	0.692	1.00
255_A	276_A	0.692	1.00
90_L	104_L	0.688	1.00
41_V	181_T	0.686	1.00
23_I	282_L	0.685	1.00
259_A	304_E	0.684	1.00
12_I	43_C	0.682	1.00
24_G	28_I	0.681	1.00
116_G	122_G	0.678	1.00
172_F	298_I	0.676	1.00
114_T	126_K	0.673	1.00
234_F	237_A	0.671	1.00
139_L	146_N	0.667	1.00
248_I	287_D	0.667	1.00
270_A	275_G	0.666	1.00
256_I	272_I	0.666	1.00
163_E	192_T	0.664	1.00
246_K	284_L	0.663	1.00
20_L	23_I	0.660	1.00
98_I	105_K	0.656	1.00
30_A	278_V	0.656	1.00
168_Q	193_K	0.655	1.00
218_E	241_L	0.655	1.00
52_D	58_V	0.648	1.00
172_F	198_L	0.648	1.00
120_M	124_I	0.648	1.00
13_G	37_P	0.647	1.00
91_T	112_V	0.647	1.00
169_V	294_N	0.645	1.00
39_F	302_S	0.643	1.00
213_Q	221_K	0.641	1.00
87_K	138_Y	0.640	1.00
262_L	268_I	0.634	1.00
162_W	165_T	0.634	1.00
45_I	49_M	0.634	1.00
96_M	101_R	0.633	1.00
112_V	130_I	0.633	1.00
8_N	11_T	0.629	1.00
96_M	228_Q	0.629	1.00
229_G	273_S	0.626	1.00
91_T	114_T	0.626	1.00
23_I	258_T	0.625	1.00
175_G	277_A	0.624	1.00
21_N	24_G	0.624	1.00
201_V	284_L	0.622	1.00
223_G	226_K	0.622	1.00
17_L	29_L	0.619	1.00
71_G	74_G	0.617	1.00
92_M	101_R	0.616	1.00
65_L	88_L	0.616	1.00
49_M	149_N	0.616	1.00
120_M	143_Q	0.615	1.00
23_I	266_E	0.614	1.00
110_N	134_N	0.613	1.00
131_V	134_N	0.612	1.00
46_G	80_V	0.610	1.00
176_V	211_I	0.610	1.00
173_I	295_I	0.605	1.00
62_G	87_K	0.604	1.00
204_E	210_V	0.603	1.00
17_L	164_D	0.602	1.00
49_M	148_A	0.600	1.00
78_A	104_L	0.599	1.00
122_G	126_K	0.598	1.00
286_E	289_S	0.597	1.00
262_L	266_E	0.596	1.00
32_V	268_I	0.594	1.00
161_I	185_V	0.593	1.00
94_E	113_L	0.589	1.00
203_V	248_I	0.585	1.00
221_K	224_P	0.585	1.00
190_K	242_K	0.584	1.00
23_I	278_V	0.583	1.00
13_G	36_N	0.583	1.00
222_P	234_F	0.583	1.00
37_P	43_C	0.582	1.00
20_L	24_G	0.581	1.00
43_C	79_Y	0.580	1.00
203_V	276_A	0.580	1.00
174_A	182_L	0.579	1.00
252_N	256_I	0.578	1.00
262_L	299_L	0.577	1.00
259_A	272_I	0.577	1.00
152_I	187_R	0.576	1.00
280_A	284_L	0.576	1.00
221_K	226_K	0.576	1.00
74_G	90_L	0.575	1.00
190_K	243_L	0.575	1.00
66_V	91_T	0.573	1.00
126_K	133_S	0.573	1.00
194_G	198_L	0.568	1.00
278_V	282_L	0.562	1.00
115_E	122_G	0.562	1.00
12_I	47_A	0.560	1.00
87_K	134_N	0.560	1.00
103_L	106_A	0.559	1.00
31_K	160_E	0.557	1.00
172_F	200_S	0.557	1.00
274_S	277_A	0.557	1.00
202_A	244_V	0.556	1.00
78_A	88_L	0.554	1.00
34_S	302_S	0.553	1.00
195_K	198_L	0.553	1.00
281_A	285_Q	0.550	1.00
92_M	96_M	0.550	1.00
55_K	62_G	0.550	1.00
49_M	139_L	0.550	1.00
257_S	260_R	0.549	1.00
68_P	141_L	0.549	1.00
45_I	73_T	0.548	1.00
77_L	90_L	0.548	1.00
26_G	282_L	0.547	1.00
23_I	261_R	0.544	1.00
30_A	262_L	0.542	1.00
130_I	138_Y	0.542	1.00
123_A	127_A	0.540	1.00
240_D	243_L	0.540	1.00
53_A	58_V	0.540	1.00
150_P	183_T	0.539	1.00
183_T	187_R	0.538	1.00
34_S	268_I	0.538	1.00
210_V	213_Q	0.537	1.00
165_T	168_Q	0.536	1.00
152_I	156_T	0.536	1.00
222_P	225_H	0.529	0.99
57_G	139_L	0.528	0.99
171_V	289_S	0.528	0.99
210_V	235_I	0.527	0.99
252_N	255_A	0.525	0.99
67_E	77_L	0.523	0.99
11_T	35_R	0.521	0.99
250_I	276_A	0.521	0.99
57_G	63_V	0.519	0.99
251_T	283_K	0.519	0.99
73_T	141_L	0.519	0.99
119_G	123_A	0.518	0.99
185_V	188_Y	0.517	0.99
220_I	237_A	0.517	0.99
204_E	212_A	0.517	0.99
11_T	51_W	0.516	0.99
66_V	140_L	0.516	0.99
124_I	127_A	0.515	0.99
239_L	247_V	0.515	0.99
73_T	154_E	0.513	0.99
23_I	265_E	0.513	0.99
68_P	124_I	0.512	0.99
69_T	90_L	0.512	0.99
227_I	230_I	0.512	0.99
183_T	239_L	0.511	0.99
161_I	298_I	0.510	0.99
64_E	110_N	0.509	0.99
271_G	301_S	0.508	0.99
37_P	79_Y	0.505	0.99
33_E	36_N	0.500	0.99

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2pqmA	2	0.969	100	0.158	Contact Map
1y7lA	2	0.9505	100	0.162	Contact Map
3pc3A	2	0.9845	100	0.167	Contact Map
3tbhA	2	0.9567	100	0.169	Contact Map
4ofxA	2	0.8762	100	0.171	Contact Map
3vc3A	2	0.9721	100	0.174	Contact Map
4cooA	2	0.9845	100	0.175	Contact Map
4aecA	2	0.9721	100	0.175	Contact Map
2v03A	2	0.8947	100	0.175	Contact Map
2q3bA	2	0.9195	100	0.18	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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