GREMLIN Database
CYDA - Cytochrome bd-I ubiquinol oxidase subunit 1
UniProt: P0ABJ9 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG10173
Length: 522 (500)
Sequences: 672 (326)
Seq/√Len: 14.6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
201_G430_I11.7161.00
170_S173_E8.6141.00
452_A462_A5.7931.00
133_V137_S5.7801.00
396_C400_L5.7141.00
273_G282_N5.6691.00
34_A131_W5.3381.00
276_D283_K4.9151.00
261_E308_K4.7741.00
235_I401_L4.1541.00
276_D279_E3.9391.00
319_R369_E3.6500.99
194_T437_V3.4120.99
320_N347_M3.3220.99
18_Y486_L3.3040.99
243_Y298_R3.2480.99
469_G473_F2.9100.97
207_M213_F2.9000.97
363_N366_D2.8190.97
399_L429_G2.7880.96
311_M376_T2.7600.96
334_G337_D2.7590.96
44_G123_K2.6780.95
58_L198_F2.6770.95
17_M442_F2.6290.95
296_A304_V2.6240.95
31_F34_A2.6040.94
407_S422_L2.5620.94
162_E344_F2.5510.94
424_R428_Y2.4430.92
297_T302_T2.4340.92
442_F446_Y2.3310.90
270_T273_G2.3090.90
406_L410_S2.2920.90
46_Q50_D2.2870.89
266_P290_Y2.2430.89
368_T371_Q2.1960.87
205_W211_R2.1900.87
483_T487_V2.1220.86
270_T282_N2.1150.85
382_R385_P2.1080.85
4_I463_N2.0660.84
376_T379_S2.0270.83
204_A207_M2.0110.82
205_W209_K1.9900.82
31_F131_W1.9700.81
359_R378_D1.9680.81
195_G430_I1.9520.80
191_G234_V1.9460.80
361_T364_V1.9190.79
416_I435_I1.9120.79
108_S222_I1.9000.78
251_T307_L1.8910.78
160_N167_E1.8790.78
389_A439_A1.8120.75
483_T486_L1.7880.74
452_A459_T1.7860.74
202_I497_A1.7730.73
60_G115_F1.7700.73
337_D340_V1.7530.72
403_I422_L1.7530.72
315_E373_Q1.7490.72
239_D298_R1.7330.71
429_G432_L1.7300.71
270_T387_Y1.7120.70
128_C132_L1.7060.70
490_L494_F1.6960.70
327_L347_M1.6930.70
212_D502_S1.6860.69
476_V480_G1.6620.68
193_V234_V1.6590.68
277_Q384_A1.6390.67
292_L296_A1.6260.66
231_V401_L1.6150.66
195_G201_G1.6140.66
330_Q366_D1.5990.65
315_E319_R1.5960.65
210_G420_K1.5900.65
360_Y378_D1.5870.64
18_Y483_T1.5800.64
230_A234_V1.5780.64
212_D504_L1.5540.63
213_F217_K1.5380.62
242_G256_I1.5260.61
326_S365_A1.5200.61
131_W195_G1.5120.60
232_L236_V1.4960.60
50_D504_L1.4790.59
204_A220_F1.4790.59
158_D348_K1.4730.58
204_A426_A1.4710.58
345_N348_K1.4650.58
312_V315_E1.4610.58
494_F497_A1.4550.57
32_L196_A1.4390.57
294_I300_V1.4380.56
269_F292_L1.4330.56
311_M380_I1.4230.56
251_T380_I1.4220.56
49_K363_N1.4190.55
310_L314_H1.4150.55
272_F284_F1.4050.55
454_G462_A1.4040.55
201_G494_F1.3980.54
339_A343_Q1.3950.54
420_K424_R1.3850.54
228_M232_L1.3830.53
228_M273_G1.3810.53
94_A168_M1.3720.53
410_S419_K1.3710.53
30_A134_A1.3670.53
50_D212_D1.3640.52
94_A171_F1.3590.52
42_L408_F1.3550.52
470_D473_F1.3480.52
452_A457_L1.3440.51
327_L340_V1.3430.51
410_S415_R1.3390.51
71_L201_G1.3350.51
34_A394_V1.3250.50
111_V170_S1.3240.50
137_S258_A1.3130.50
268_A292_L1.3120.50
280_E311_M1.3050.49
292_L304_V1.2930.49
314_H379_S1.2860.48
38_T131_W1.2850.48
170_S496_F1.2820.48
134_A138_N1.2820.48
256_I269_F1.2810.48
311_M377_K1.2790.48
36_M166_M1.2730.47
138_N195_G1.2710.47
161_F331_L1.2680.47
364_V367_A1.2590.47
280_E377_K1.2580.47
466_L471_L1.2550.46
14_L479_C1.2500.46
382_R446_Y1.2500.46
121_L129_V1.2220.45
286_I388_F1.2150.44
399_L425_A1.2100.44
176_L244_E1.2070.44
273_G383_V1.2060.44
197_M403_I1.2010.43
142_L175_V1.2000.43
327_L379_S1.1970.43
395_A399_L1.1910.43
110_F292_L1.1900.43
82_S474_S1.1870.43
240_E298_R1.1800.42
191_G437_V1.1800.42
496_F499_L1.1790.42
294_I299_S1.1690.42
353_Y356_L1.1620.41
361_T365_A1.1620.41
197_M429_G1.1590.41
197_M201_G1.1590.41
9_R12_F1.1460.40
366_D371_Q1.1430.40
47_I214_A1.1380.40
475_M479_C1.1370.40
373_Q377_K1.1360.40
394_V443_V1.1360.40
481_L485_F1.1300.40
248_V462_A1.1280.40
6_E13_A1.1240.39
282_N414_N1.1240.39
269_F394_V1.1190.39
248_V454_G1.1150.39
385_P442_F1.1130.39
33_L137_S1.1080.38
100_G485_F1.1040.38
108_S235_I1.1030.38
396_C432_L1.0970.38
229_A232_L1.0970.38
4_I8_S1.0960.38
57_K220_F1.0950.38
87_Y166_M1.0880.37
173_E209_K1.0860.37
415_R419_K1.0840.37
331_L335_S1.0840.37
138_N192_Y1.0810.37
323_K347_M1.0780.37
106_L132_L1.0780.37
260_W277_Q1.0770.37
76_Q195_G1.0760.37
48_Y454_G1.0740.37
481_L496_F1.0730.37
279_E283_K1.0640.36
108_S251_T1.0630.36
463_N471_L1.0610.36
158_D169_V1.0610.36
333_S366_D1.0570.36
131_W394_V1.0510.36
102_M459_T1.0500.35
108_S496_F1.0480.35
274_I388_F1.0450.35
357_L361_T1.0430.35
480_G484_L1.0400.35
287_Q296_A1.0400.35
430_I494_F1.0390.35
263_Q303_P1.0320.35
280_E308_K1.0320.35
475_M488_A1.0310.35
403_I426_A1.0300.34
229_A233_S1.0290.34
196_A276_D1.0280.34
48_Y222_I1.0270.34
427_L430_I1.0260.34
48_Y401_L1.0250.34
268_A285_A1.0230.34
229_A250_K1.0230.34
374_Q378_D1.0210.34
233_S250_K1.0200.34
271_L284_F1.0170.34
71_L488_A1.0050.33
212_D503_S1.0050.33
305_I309_E1.0020.33
210_G373_Q1.0020.33
251_T454_G1.0020.33
50_D502_S0.9990.33
320_N350_D0.9980.33
476_V479_C0.9950.33
137_S498_R0.9930.33
481_L497_A0.9890.32
206_Y501_P0.9860.32
36_M51_M0.9840.32
122_G125_Q0.9830.32
65_L94_A0.9820.32
65_L68_A0.9780.32
189_A295_I0.9770.32
110_F132_L0.9770.32
41_V127_M0.9760.32
404_I426_A0.9750.32
65_L71_L0.9720.32
120_R425_A0.9710.32
402_A406_L0.9690.31
27_L139_L0.9660.31
380_I456_V0.9650.31
91_I486_L0.9640.31
149_G420_K0.9630.31
239_D243_Y0.9620.31
137_S194_T0.9620.31
387_Y404_I0.9590.31
4_I471_L0.9580.31
232_L434_W0.9570.31
48_Y57_K0.9500.31
7_L10_L0.9500.31
314_H324_A0.9460.30
259_E304_V0.9460.30
231_V400_L0.9450.30
471_L475_M0.9420.30
46_Q49_K0.9390.30
472_I476_V0.9380.30
48_Y108_S0.9350.30
21_L489_E0.9330.30
291_A309_E0.9300.30
377_K380_I0.9280.30
389_A442_F0.9270.30
111_V453_I0.9260.29
410_S422_L0.9250.29
391_R395_A0.9240.29
224_A407_S0.9190.29
129_V132_L0.9180.29
335_S340_V0.9170.29
198_F493_M0.9110.29
33_L195_G0.9100.29
82_S443_V0.9100.29
31_F138_N0.9090.29
478_I485_F0.9090.29
48_Y251_T0.9050.29
284_F388_F0.9040.28
135_L258_A0.9030.28
255_A386_L0.9020.28
158_D209_K0.9010.28
49_K53_K0.9000.28
34_A195_G0.9000.28
259_E263_Q0.8960.28
235_I400_L0.8950.28
479_C483_T0.8900.28
10_L475_M0.8890.28
367_A372_I0.8870.28
13_A65_L0.8860.28
157_S166_M0.8860.28
462_A467_T0.8850.28
197_M433_P0.8830.28
372_I379_S0.8830.28
486_L490_L0.8830.28
31_F116_F0.8800.27
116_F131_W0.8800.27
210_G418_E0.8750.27
8_S11_Q0.8740.27
57_K108_S0.8730.27
71_L430_I0.8720.27
453_I486_L0.8720.27
276_D281_T0.8720.27
14_L18_Y0.8700.27
201_G424_R0.8650.27
73_M202_I0.8650.27
220_F224_A0.8640.27
17_M157_S0.8640.27
46_Q205_W0.8610.27
123_K213_F0.8600.27
82_S389_A0.8600.27
472_I475_M0.8570.26
421_W426_A0.8560.26
31_F133_V0.8550.26
418_E487_V0.8550.26
205_W428_Y0.8550.26
360_Y371_Q0.8510.26
209_K335_S0.8510.26
491_F495_K0.8500.26
395_A398_F0.8480.26
100_G478_I0.8460.26
102_M142_L0.8460.26
133_V470_D0.8440.26
270_T284_F0.8430.26
210_G320_N0.8400.26
34_A139_L0.8400.26
385_P446_Y0.8370.26
155_I485_F0.8370.26
198_F202_I0.8360.26
149_G240_E0.8360.26
134_A142_L0.8350.25
110_F143_W0.8310.25
7_L475_M0.8310.25
47_I51_M0.8290.25
237_L250_K0.8280.25
461_V465_S0.8240.25
137_S437_V0.8230.25
108_S248_V0.8200.25
373_Q378_D0.8180.25
343_Q346_S0.8170.25
48_Y474_S0.8160.25
361_T366_D0.8160.25
6_E10_L0.8130.25
316_E345_N0.8130.25
17_M413_R0.8080.24
245_M256_I0.8070.24
250_K454_G0.8030.24
71_L423_L0.7990.24
38_T53_K0.7970.24
228_M405_A0.7960.24
14_L475_M0.7950.24
374_Q377_K0.7930.24
91_I168_M0.7910.24
354_G474_S0.7860.23
123_K215_F0.7860.23
342_D346_S0.7850.23
141_A180_A0.7850.23
495_K499_L0.7850.23
295_I298_R0.7840.23
50_D57_K0.7830.23
259_E296_A0.7830.23
371_Q374_Q0.7820.23
176_L383_V0.7800.23
322_M354_G0.7800.23
286_I395_A0.7790.23
285_A292_L0.7790.23
452_A479_C0.7780.23
392_I427_L0.7780.23
256_I305_I0.7760.23
94_A152_Q0.7760.23
240_E243_Y0.7760.23
361_T371_Q0.7740.23
410_S478_I0.7730.23
358_K372_I0.7720.23
46_Q484_L0.7700.23
17_M438_E0.7700.23
172_S292_L0.7690.23
342_D484_L0.7690.23
271_L288_I0.7660.23
9_R13_A0.7650.23
484_L488_A0.7640.23
32_L175_V0.7640.23
231_V246_G0.7630.23
30_A137_S0.7620.23
57_K79_T0.7600.22
196_A231_V0.7600.22
204_A422_L0.7600.22
10_L14_L0.7570.22
243_Y247_D0.7550.22
82_S461_V0.7550.22
268_A287_Q0.7550.22
275_P388_F0.7530.22
46_Q196_A0.7510.22
247_D250_K0.7500.22
330_Q340_V0.7500.22
31_F217_K0.7480.22
202_I502_S0.7470.22
253_L309_E0.7470.22
474_S491_F0.7440.22
248_V310_L0.7420.22
17_M395_A0.7410.22
461_V477_L0.7400.22
135_L172_S0.7390.22
146_V180_A0.7370.22
189_A233_S0.7350.22
56_G114_F0.7340.21
294_I298_R0.7340.21
339_A469_G0.7320.21
270_T391_R0.7320.21
312_V380_I0.7280.21
296_A408_F0.7240.21
354_G457_L0.7240.21
386_L442_F0.7240.21
65_L247_D0.7220.21
172_S302_T0.7210.21
220_F223_A0.7210.21
146_V384_A0.7210.21
334_G345_N0.7190.21
4_I172_S0.7170.21
82_S481_L0.7170.21
49_K212_D0.7170.21
146_V380_I0.7160.21
82_S245_M0.7160.21
111_V173_E0.7150.21
220_F462_A0.7130.21
232_L272_F0.7110.21
123_K420_K0.7100.21
422_L426_A0.7100.21
113_L125_Q0.7100.21
79_T108_S0.7100.21
53_K212_D0.7090.21
191_G199_I0.7080.21
398_F402_A0.7080.21
58_L493_M0.7080.21
274_I280_E0.7070.20
305_I313_Q0.7060.20
320_N403_I0.7050.20
231_V436_A0.7050.20
34_A225_S0.7040.20
349_K422_L0.7020.20
263_Q287_Q0.7020.20
65_L488_A0.7020.20
108_S189_A0.7010.20
199_I203_S0.7000.20
153_N271_L0.6980.20
131_W454_G0.6970.20
185_V236_V0.6960.20
38_T127_M0.6950.20
79_T486_L0.6950.20
399_L403_I0.6940.20
174_L310_L0.6940.20
251_T311_M0.6930.20
232_L401_L0.6930.20
88_V91_I0.6910.20
65_L487_V0.6900.20
404_I460_A0.6900.20
310_L315_E0.6900.20
228_M408_F0.6890.20
174_L205_W0.6890.20
245_M386_L0.6890.20
400_L404_I0.6890.20
167_E187_T0.6890.20
30_A364_V0.6880.20
270_T304_V0.6880.20
202_I474_S0.6870.20
20_F192_Y0.6850.20
49_K427_L0.6850.20
200_L220_F0.6850.20
214_A379_S0.6840.20
82_S462_A0.6820.20
8_S12_F0.6800.20
53_K123_K0.6790.19
45_K214_A0.6780.19
290_Y463_N0.6780.19
205_W220_F0.6780.19
42_L250_K0.6770.19
203_S219_S0.6760.19
6_E495_K0.6760.19
38_T106_L0.6740.19
158_D231_V0.6720.19
293_G302_T0.6710.19
172_S278_E0.6710.19
253_L296_A0.6700.19
386_L446_Y0.6690.19
233_S236_V0.6690.19
146_V176_L0.6670.19
35_I222_I0.6630.19
494_F499_L0.6620.19
246_G296_A0.6620.19
461_V489_E0.6620.19
471_L476_V0.6610.19
217_K462_A0.6600.19
453_I471_L0.6600.19
142_L495_K0.6600.19
123_K135_L0.6590.19
149_G177_N0.6590.19
273_G414_N0.6580.19
259_E307_L0.6550.19
321_G324_A0.6550.19
128_C296_A0.6540.19
194_T271_L0.6540.19
87_Y357_L0.6540.19
30_A49_K0.6530.19
399_L489_E0.6520.19
331_L406_L0.6520.19
468_A471_L0.6510.19
128_C314_H0.6510.19
176_L217_K0.6510.19
182_V334_G0.6500.18
182_V259_E0.6490.18
331_L334_G0.6490.18
191_G356_L0.6490.18
47_I218_R0.6490.18
245_M452_A0.6450.18
336_T363_N0.6450.18
51_M493_M0.6450.18
134_A192_Y0.6440.18
170_S438_E0.6440.18
455_E496_F0.6430.18
304_V334_G0.6430.18
380_I389_A0.6430.18
31_F35_I0.6420.18
120_R223_A0.6410.18
61_I321_G0.6400.18
258_A270_T0.6360.18
282_N285_A0.6360.18
212_D493_M0.6360.18
120_R320_N0.6360.18
73_M217_K0.6350.18
385_P410_S0.6330.18
108_S132_L0.6310.18
409_W413_R0.6310.18
162_E273_G0.6310.18
101_L293_G0.6310.18
301_D374_Q0.6310.18
395_A416_I0.6300.18
57_K215_F0.6300.18
161_F396_C0.6270.18
442_F473_F0.6250.18
46_Q212_D0.6250.18
150_W241_S0.6240.18
34_A38_T0.6240.18
129_V135_L0.6230.18
160_N168_M0.6220.18
73_M101_L0.6200.18
391_R464_S0.6200.18
201_G488_A0.6180.17
226_F403_I0.6170.17
149_G459_T0.6170.17
320_N323_K0.6160.17
456_V483_T0.6160.17
182_V231_V0.6150.17
204_A423_L0.6150.17
246_G401_L0.6150.17
33_L57_K0.6140.17
189_A474_S0.6130.17
460_A463_N0.6130.17
338_Q346_S0.6130.17
297_T372_I0.6120.17
183_K241_S0.6110.17
329_E486_L0.6100.17
36_M188_V0.6090.17
52_T71_L0.6070.17
11_Q15_T0.6050.17
396_C455_E0.6040.17
100_G459_T0.6040.17
471_L474_S0.6040.17
346_S402_A0.6040.17
243_Y416_I0.6040.17
42_L153_N0.6020.17
322_M363_N0.6020.17
247_D454_G0.6010.17
225_S416_I0.6010.17
179_V193_V0.6000.17
277_Q385_P0.6000.17
34_A302_T0.6000.17
212_D348_K0.5970.17
82_S195_G0.5970.17
462_A465_S0.5970.17
52_T213_F0.5960.17
259_E305_I0.5960.17
329_E488_A0.5960.17
108_S307_L0.5940.17
256_I443_V0.5940.17
38_T392_I0.5920.17
336_T340_V0.5920.17
182_V240_E0.5910.17
354_G504_L0.5910.17
292_L499_L0.5900.17
246_G400_L0.5900.17
242_G391_R0.5890.17
209_K502_S0.5880.17
68_A504_L0.5860.16
327_L485_F0.5840.16
6_E212_D0.5830.16
268_A286_I0.5820.16
71_L476_V0.5820.16
168_M462_A0.5820.16
162_E432_L0.5820.16
176_L230_A0.5820.16
5_V239_D0.5810.16
87_Y299_S0.5800.16
241_S443_V0.5800.16
202_I465_S0.5790.16
32_L199_I0.5790.16
34_A116_F0.5770.16
208_L420_K0.5770.16
246_G454_G0.5770.16
405_A409_W0.5760.16
253_L489_E0.5760.16
170_S313_Q0.5730.16
210_G214_A0.5730.16
288_I331_L0.5720.16
274_I395_A0.5710.16
403_I429_G0.5710.16
209_K486_L0.5710.16
87_Y293_G0.5700.16
225_S295_I0.5700.16
48_Y220_F0.5690.16
263_Q268_A0.5690.16
244_E335_S0.5680.16
334_G486_L0.5680.16
79_T489_E0.5680.16
489_E492_L0.5680.16
188_V269_F0.5670.16
60_G111_V0.5670.16
256_I454_G0.5670.16
343_Q347_M0.5670.16
384_A466_L0.5660.16
171_F175_V0.5660.16
419_K423_L0.5650.16
355_L358_K0.5630.16
160_N196_A0.5600.16
215_F497_A0.5600.16
221_A411_V0.5600.16
189_A240_E0.5600.16
30_A146_V0.5600.16
112_G482_Y0.5590.16
33_L134_A0.5580.16
95_P98_I0.5580.16
173_E438_E0.5580.16
271_L287_Q0.5580.16
209_K490_L0.5570.16
266_P299_S0.5570.16
271_L392_I0.5560.16
352_G356_L0.5560.16
72_T461_V0.5560.16
79_T120_R0.5550.16
38_T348_K0.5540.16
462_A466_L0.5530.15
273_G281_T0.5530.15
42_L412_I0.5530.15
192_Y226_F0.5530.15
359_R499_L0.5520.15
108_S473_F0.5520.15
17_M43_S0.5520.15
378_D460_A0.5520.15
416_I473_F0.5500.15
331_L422_L0.5500.15
35_I408_F0.5470.15
52_T134_A0.5470.15
67_V280_E0.5460.15
471_L485_F0.5450.15
330_Q337_D0.5450.15
128_C261_E0.5450.15
245_M427_L0.5450.15
294_I310_L0.5450.15
91_I119_D0.5450.15
394_V479_C0.5450.15
67_V111_V0.5440.15
276_D302_T0.5440.15
131_W225_S0.5420.15
36_M52_T0.5420.15
173_E294_I0.5410.15
321_G436_A0.5410.15
380_I497_A0.5410.15
5_V218_R0.5410.15
4_I116_F0.5390.15
205_W309_E0.5390.15
253_L268_A0.5380.15
14_L471_L0.5380.15
413_R427_L0.5370.15
274_I282_N0.5370.15
42_L233_S0.5370.15
149_G314_H0.5370.15
17_M427_L0.5350.15
44_G493_M0.5350.15
178_P247_D0.5350.15
184_F397_G0.5330.15
317_R350_D0.5330.15
244_E304_V0.5310.15
90_D105_F0.5310.15
42_L229_A0.5310.15
83_Y434_W0.5290.15
270_T287_Q0.5290.15
11_Q16_A0.5280.15
120_R201_G0.5270.15
200_L407_S0.5260.15
193_V231_V0.5260.15
158_D361_T0.5260.15
121_L359_R0.5250.15
34_A134_A0.5250.15
263_Q340_V0.5250.15
173_E369_E0.5230.15
161_F327_L0.5230.15
233_S237_L0.5220.15
39_V229_A0.5220.15
12_F19_H0.5220.15
64_A493_M0.5210.15
421_W474_S0.5210.15
131_W429_G0.5200.15
134_A191_G0.5200.15
185_V237_L0.5190.15
341_R487_V0.5190.15
48_Y497_A0.5180.14
106_L236_V0.5170.14
275_P352_G0.5160.14
169_V173_E0.5160.14
494_F498_R0.5150.14
201_G490_L0.5140.14
5_V8_S0.5140.14
329_E333_S0.5140.14
291_A296_A0.5140.14
18_Y27_L0.5140.14
4_I221_A0.5140.14
146_V323_K0.5140.14
168_M176_L0.5130.14
280_E283_K0.5130.14
439_A494_F0.5120.14
196_A201_G0.5120.14
334_G338_Q0.5120.14
179_V386_L0.5110.14
137_S192_Y0.5100.14
166_M293_G0.5100.14
260_W282_N0.5100.14
7_L262_T0.5090.14
497_A502_S0.5090.14
72_T481_L0.5080.14
181_Q491_F0.5060.14
453_I463_N0.5060.14
343_Q485_F0.5050.14
38_T283_K0.5050.14
65_L401_L0.5050.14
79_T105_F0.5040.14
124_V408_F0.5040.14
101_L166_M0.5040.14
45_K202_I0.5030.14
6_E373_Q0.5030.14
334_G340_V0.5020.14
286_I341_R0.5020.14
156_A174_L0.5020.14
170_S499_L0.5020.14
79_T499_L0.5010.14
19_H23_V0.5000.14
133_V396_C0.5000.14
111_V137_S0.5000.14
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1mnnA 1 0.1322 41.9 0.986 Contact Map
2k1kA 2 0.0709 10.8 0.99 Contact Map
4nv5A 1 0.4904 9.7 0.99 Contact Map
3mk7A 1 0.3582 8.3 0.99 Contact Map
2ju0B 1 0.092 7.7 0.99 Contact Map
2ks1B 1 0.0824 7.7 0.99 Contact Map
4or2A 2 0.3716 7.5 0.99 Contact Map
2g0uA 1 0.1667 6.6 0.991 Contact Map
4pw2A 2 0.1245 6.5 0.991 Contact Map
2l2tA 2 0.0785 6.2 0.991 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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