ATPA - ECOLI - GREMLIN Contacts

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ATPA - ATP synthase subunit alpha

UniProt:	P0ABB0	Sequences: MQLNSTEISELIKQRIAQFNVVSEAHNEGTIVSVSDGVIRIHGLADCMQGEMISLPGNRYAIALNLERDSVGAVVMGPYADLAEGMKVKCTGRILEVPVGRGLLGRVVNTLGAPIDGKGPLDHDGFSAVEAIAPGVIERQSVDQPVQTGYKAVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQRDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSKQAVAYRQISLLLRRPPGREAFPGDVFYLHSRLLERAARVNAEYVEAFTKGEVKGKTGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLETNLFNAGIRPAVNPGISVSRVGGAAQTKIMKKLSGGIRTALAQYRELAAFSQFASDLDDATRKQLDHGQKVTELLKQKQYAPMSVAQQSLVLFAAERGYLADVELSKIGSFEAALLAYVDRDHAPLMQEINQTGGYNDEIEGKLKGILDSFKATQSW	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG10098
Length:	513 (427)
Sequences:	7753 (2618)
Seq/√Len:	126.7

ECOLI - ATPA FLII ATPB RHO
BACSU - ATPA FLII ATPB RHO
HALSA - VATB VATA
SULSO - VATB VATA

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
109_N	113_A	7.944	1.00
161_R	255_D	4.621	1.00
196_V	242_G	4.455	1.00
356_E	369_N	4.139	1.00
41_I	73_A	3.780	1.00
440_S	443_Q	3.714	1.00
51_E	90_C	3.291	1.00
152_A	368_V	3.248	1.00
393_I	427_V	3.100	1.00
385_I	449_F	3.028	1.00
53_I	73_A	2.976	1.00
93_R	96_E	2.888	1.00
106_R	116_D	2.758	1.00
53_I	88_V	2.644	1.00
61_A	73_A	2.592	1.00
47_C	63_A	2.573	1.00
194_I	246_G	2.563	1.00
101_R	254_E	2.524	1.00
144_Q	161_R	2.483	1.00
243_C	328_P	2.468	1.00
54_S	89_K	2.456	1.00
102_G	124_D	2.444	1.00
96_E	126_F	2.435	1.00
246_G	324_L	2.375	1.00
151_K	439_M	2.372	1.00
382_Q	387_K	2.294	1.00
159_I	327_L	2.288	1.00
392_G	395_T	2.276	1.00
177_A	435_Q	2.267	1.00
215_H	219_A	2.225	1.00
41_I	88_V	2.224	1.00
155_S	444_Q	2.173	1.00
108_V	245_M	2.143	1.00
127_S	131_A	2.121	1.00
359_L	364_I	2.110	1.00
210_R	213_E	2.108	1.00
40_R	70_S	2.108	1.00
224_V	245_M	2.097	1.00
118_K	213_E	2.056	1.00
337_V	354_F	2.036	1.00
216_G	219_A	2.017	1.00
401_R	404_A	1.988	1.00
210_R	214_E	1.975	1.00
392_G	419_K	1.971	1.00
384_K	388_K	1.961	1.00
48_M	51_E	1.957	1.00
206_S	210_R	1.951	1.00
156_M	393_I	1.949	1.00
31_I	82_L	1.930	1.00
33_S	40_R	1.929	1.00
209_V	223_V	1.902	1.00
389_L	449_F	1.881	1.00
424_G	428_T	1.871	1.00
28_E	87_K	1.806	1.00
159_I	353_I	1.798	1.00
247_E	300_R	1.786	1.00
460_E	463_K	1.785	1.00
56_P	87_K	1.767	1.00
407_S	421_L	1.762	1.00
32_V	42_H	1.747	1.00
364_I	428_T	1.743	1.00
222_I	245_M	1.736	1.00
147_Q	154_D	1.729	1.00
364_I	432_K	1.703	1.00
127_S	244_A	1.702	1.00
127_S	248_Y	1.695	1.00
404_A	408_Q	1.692	1.00
155_S	430_L	1.689	1.00
454_G	457_A	1.681	1.00
466_S	470_A	1.678	1.00
144_Q	303_R	1.673	1.00
362_A	428_T	1.667	1.00
106_R	118_K	1.664	1.00
330_I	345_V	1.641	1.00
450_A	455_Y	1.636	1.00
51_E	92_G	1.625	1.00
125_G	252_R	1.619	1.00
170_D	173_T	1.609	1.00
429_E	432_K	1.608	1.00
108_V	224_V	1.607	1.00
27_N	90_C	1.606	1.00
97_V	245_M	1.594	1.00
463_K	466_S	1.593	1.00
459_V	463_K	1.591	1.00
363_G	391_G	1.565	1.00
194_I	245_M	1.565	1.00
106_R	119_G	1.545	1.00
98_P	126_F	1.537	1.00
103_L	245_M	1.534	1.00
389_L	445_S	1.507	1.00
102_G	122_D	1.501	1.00
158_P	378_G	1.493	1.00
55_L	61_A	1.493	1.00
31_I	86_M	1.485	1.00
422_D	425_Q	1.476	1.00
450_A	456_L	1.463	1.00
166_L	349_T	1.460	1.00
102_G	123_H	1.457	1.00
95_L	129_V	1.452	1.00
101_R	248_Y	1.451	1.00
32_V	70_S	1.446	1.00
255_D	323_S	1.445	1.00
434_K	437_A	1.417	1.00
411_S	422_D	1.412	1.00
146_V	191_I	1.407	1.00
248_Y	252_R	1.398	1.00
378_G	390_S	1.393	1.00
264_S	268_V	1.392	1.00
399_Q	417_T	1.392	1.00
148_T	159_I	1.389	1.00
399_Q	402_E	1.385	1.00
198_I	238_A	1.385	1.00
30_T	87_K	1.382	1.00
127_S	251_D	1.382	1.00
47_C	71_V	1.381	1.00
196_V	260_Y	1.379	1.00
26_H	89_K	1.377	1.00
93_R	126_F	1.364	1.00
41_I	44_L	1.355	1.00
243_C	301_A	1.353	1.00
56_P	89_K	1.351	1.00
109_N	230_E	1.346	1.00
256_A	324_L	1.342	1.00
395_T	416_A	1.337	1.00
47_C	53_I	1.337	1.00
386_M	445_S	1.331	1.00
197_A	205_I	1.330	1.00
239_P	297_L	1.328	1.00
339_A	342_P	1.319	1.00
211_K	380_A	1.313	1.00
213_E	218_L	1.313	1.00
114_P	119_G	1.309	1.00
177_A	436_Y	1.308	1.00
106_R	114_P	1.306	1.00
79_Y	82_L	1.305	1.00
97_V	241_A	1.301	1.00
362_A	404_A	1.295	1.00
383_T	441_V	1.291	1.00
459_V	467_F	1.290	1.00
131_A	251_D	1.290	1.00
54_S	91_T	1.289	1.00
253_G	321_T	1.272	1.00
446_L	450_A	1.261	1.00
298_L	348_I	1.254	1.00
60_Y	113_A	1.249	1.00
391_G	394_R	1.237	1.00
107_V	209_V	1.233	1.00
403_L	417_T	1.230	0.99
142_V	160_G	1.229	0.99
270_Y	293_L	1.227	0.99
147_Q	441_V	1.225	0.99
190_G	254_E	1.224	0.99
140_Q	143_D	1.215	0.99
214_E	217_A	1.210	0.99
42_H	69_D	1.197	0.99
294_H	345_V	1.195	0.99
34_V	82_L	1.190	0.99
118_K	121_L	1.189	0.99
379_G	387_K	1.185	0.99
415_D	419_K	1.180	0.99
159_I	325_T	1.180	0.99
274_S	282_G	1.177	0.99
358_N	361_N	1.164	0.99
243_C	324_L	1.163	0.99
372_I	401_R	1.155	0.99
449_F	453_R	1.152	0.99
157_I	353_I	1.148	0.99
104_L	222_I	1.145	0.99
123_H	126_F	1.145	0.99
153_V	183_I	1.139	0.99
30_T	42_H	1.138	0.99
423_H	457_A	1.131	0.99
392_G	396_A	1.130	0.99
56_P	86_M	1.127	0.99
153_V	353_I	1.124	0.99
138_E	320_K	1.119	0.99
419_K	423_H	1.109	0.99
145_P	381_A	1.108	0.99
298_L	345_V	1.107	0.99
53_I	61_A	1.105	0.99
75_V	79_Y	1.099	0.99
443_Q	447_V	1.098	0.99
377_V	381_A	1.097	0.99
42_H	70_S	1.094	0.99
427_V	451_A	1.090	0.99
364_I	431_L	1.090	0.99
110_T	241_A	1.089	0.99
101_R	252_R	1.078	0.99
125_G	248_Y	1.075	0.99
191_I	249_F	1.068	0.99
408_Q	414_D	1.065	0.99
202_A	227_T	1.062	0.99
222_I	249_F	1.061	0.99
196_V	258_I	1.060	0.98
263_L	345_V	1.060	0.98
116_D	119_G	1.058	0.98
170_D	357_T	1.056	0.98
150_Y	178_L	1.054	0.98
54_S	60_Y	1.052	0.98
184_I	221_T	1.049	0.98
150_Y	153_V	1.046	0.98
332_T	339_A	1.041	0.98
170_D	335_G	1.037	0.98
138_E	319_G	1.034	0.98
456_L	459_V	1.032	0.98
332_T	342_P	1.032	0.98
148_T	327_L	1.025	0.98
98_P	123_H	1.019	0.98
77_G	234_L	1.014	0.98
230_E	234_L	1.013	0.98
40_R	67_E	1.008	0.98
263_L	298_L	1.006	0.98
403_L	407_S	1.003	0.98
240_Y	293_L	1.000	0.98
148_T	154_D	0.998	0.98
191_I	254_E	0.991	0.98
52_M	91_T	0.989	0.98
165_E	327_L	0.986	0.98
106_R	121_L	0.986	0.98
358_N	401_R	0.986	0.98
100_G	103_L	0.982	0.98
127_S	252_R	0.980	0.97
252_R	256_A	0.979	0.97
387_K	391_G	0.975	0.97
110_T	234_L	0.970	0.97
41_I	53_I	0.969	0.97
378_G	382_Q	0.968	0.97
103_L	222_I	0.968	0.97
456_L	467_F	0.958	0.97
335_G	338_S	0.957	0.97
415_D	418_R	0.957	0.97
439_M	447_V	0.955	0.97
294_H	348_I	0.949	0.97
359_L	432_K	0.947	0.97
55_L	86_M	0.944	0.97
110_T	115_I	0.943	0.97
198_I	260_Y	0.940	0.97
369_N	372_I	0.935	0.97
395_T	399_Q	0.935	0.97
335_G	357_T	0.933	0.97
103_L	108_V	0.930	0.97
190_G	255_D	0.922	0.96
113_A	120_P	0.912	0.96
337_V	372_I	0.910	0.96
235_Q	272_Q	0.909	0.96
414_D	417_T	0.908	0.96
422_D	426_K	0.903	0.96
242_G	258_I	0.897	0.96
28_E	89_K	0.896	0.96
354_F	357_T	0.896	0.96
268_V	286_F	0.895	0.96
152_A	431_L	0.891	0.96
250_R	256_A	0.891	0.96
243_C	258_I	0.887	0.95
159_I	165_E	0.885	0.95
155_S	448_L	0.878	0.95
101_R	249_F	0.877	0.95
419_K	422_D	0.876	0.95
400_Y	424_G	0.875	0.95
463_K	467_F	0.868	0.95
119_G	123_H	0.862	0.95
108_V	121_L	0.862	0.95
351_G	376_R	0.861	0.95
106_R	115_I	0.860	0.95
201_K	204_T	0.860	0.95
193_C	196_V	0.859	0.95
337_V	342_P	0.857	0.95
158_P	441_V	0.856	0.95
170_D	343_T	0.855	0.94
463_K	470_A	0.853	0.94
83_A	86_M	0.849	0.94
38_V	277_L	0.847	0.94
207_N	380_A	0.847	0.94
292_Y	295_S	0.846	0.94
268_V	333_Q	0.846	0.94
51_E	154_D	0.844	0.94
342_P	354_F	0.840	0.94
135_G	138_E	0.840	0.94
140_Q	303_R	0.840	0.94
110_T	230_E	0.839	0.94
303_R	323_S	0.838	0.94
95_L	237_L	0.837	0.94
200_Q	204_T	0.837	0.94
184_I	220_N	0.833	0.94
267_A	294_H	0.828	0.94
184_I	187_R	0.827	0.93
255_D	303_R	0.826	0.93
217_A	221_T	0.824	0.93
160_G	377_V	0.822	0.93
209_V	213_E	0.820	0.93
393_I	452_E	0.819	0.93
50_G	63_A	0.819	0.93
219_A	222_I	0.817	0.93
266_Q	297_L	0.817	0.93
379_G	394_R	0.817	0.93
147_Q	438_P	0.816	0.93
144_Q	255_D	0.815	0.93
57_G	81_D	0.814	0.93
294_H	344_N	0.813	0.93
301_A	326_A	0.811	0.93
462_S	465_G	0.808	0.93
262_D	329_I	0.808	0.93
38_V	72_G	0.808	0.93
378_G	386_M	0.805	0.93
96_E	128_A	0.801	0.92
140_Q	319_G	0.794	0.92
439_M	444_Q	0.790	0.92
198_I	239_P	0.787	0.92
51_E	91_T	0.786	0.92
248_Y	251_D	0.786	0.92
361_N	372_I	0.785	0.92
393_I	448_L	0.785	0.92
51_E	94_I	0.785	0.92
170_D	336_D	0.781	0.91
388_K	392_G	0.781	0.91
154_D	444_Q	0.778	0.91
77_G	113_A	0.777	0.91
148_T	153_V	0.777	0.91
145_P	158_P	0.775	0.91
102_G	125_G	0.775	0.91
290_V	293_L	0.772	0.91
62_I	76_M	0.772	0.91
194_I	222_I	0.771	0.91
396_A	427_V	0.771	0.91
168_I	342_P	0.770	0.91
99_V	244_A	0.770	0.91
217_A	220_N	0.769	0.91
156_M	390_S	0.764	0.90
39_I	55_L	0.760	0.90
395_T	432_K	0.760	0.90
399_Q	403_L	0.759	0.90
389_L	448_L	0.757	0.90
129_V	241_A	0.756	0.90
256_A	272_Q	0.751	0.90
397_L	427_V	0.750	0.90
74_V	273_I	0.748	0.90
147_Q	440_S	0.747	0.89
400_Y	404_A	0.746	0.89
153_V	157_I	0.746	0.89
31_I	39_I	0.745	0.89
286_F	336_D	0.744	0.89
334_A	339_A	0.743	0.89
35_S	409_F	0.739	0.89
400_Y	428_T	0.739	0.89
141_S	380_A	0.738	0.89
146_V	187_R	0.738	0.89
170_D	285_A	0.738	0.89
241_A	244_A	0.737	0.89
384_K	466_S	0.736	0.89
238_A	242_G	0.736	0.89
94_I	128_A	0.734	0.89
184_I	259_I	0.733	0.89
336_D	343_T	0.731	0.88
430_L	447_V	0.731	0.88
140_Q	321_T	0.730	0.88
157_I	368_V	0.728	0.88
53_I	71_V	0.728	0.88
413_L	421_L	0.724	0.88
115_I	120_P	0.722	0.88
240_Y	266_Q	0.721	0.88
158_P	382_Q	0.721	0.88
461_L	465_G	0.721	0.88
386_M	441_V	0.721	0.88
121_L	124_D	0.720	0.88
104_L	218_L	0.720	0.88
423_H	454_G	0.718	0.88
396_A	419_K	0.718	0.88
416_A	425_Q	0.717	0.87
52_M	60_Y	0.716	0.87
412_D	418_R	0.715	0.87
382_Q	445_S	0.711	0.87
443_Q	446_L	0.711	0.87
266_Q	293_L	0.710	0.87
388_K	391_G	0.709	0.87
109_N	115_I	0.708	0.87
184_I	195_Y	0.706	0.87
231_S	234_L	0.705	0.87
157_I	374_V	0.704	0.86
467_F	470_A	0.704	0.86
183_I	327_L	0.704	0.86
158_P	386_M	0.703	0.86
259_I	329_I	0.702	0.86
76_M	234_L	0.702	0.86
383_T	445_S	0.701	0.86
111_L	114_P	0.700	0.86
247_E	250_R	0.699	0.86
260_Y	297_L	0.699	0.86
161_R	323_S	0.695	0.86
77_G	231_S	0.692	0.86
283_R	344_N	0.691	0.85
354_F	372_I	0.689	0.85
171_R	348_I	0.689	0.85
145_P	377_V	0.688	0.85
370_P	397_L	0.688	0.85
113_A	126_F	0.687	0.85
200_Q	265_K	0.687	0.85
257_L	327_L	0.686	0.85
458_D	465_G	0.685	0.85
55_L	88_V	0.685	0.85
174_G	261_D	0.685	0.85
453_R	464_I	0.685	0.85
214_E	218_L	0.683	0.85
405_A	408_Q	0.680	0.85
34_V	129_V	0.679	0.84
142_V	377_V	0.676	0.84
383_T	386_M	0.672	0.84
205_I	225_V	0.670	0.84
67_E	72_G	0.669	0.84
404_A	428_T	0.667	0.83
397_L	401_R	0.667	0.83
95_L	154_D	0.666	0.83
66_L	84_E	0.664	0.83
98_P	124_D	0.664	0.83
397_L	424_G	0.664	0.83
399_Q	416_A	0.663	0.83
236_Y	270_Y	0.663	0.83
95_L	241_A	0.663	0.83
146_V	159_I	0.661	0.83
41_I	71_V	0.659	0.83
213_E	219_A	0.658	0.83
150_Y	435_Q	0.658	0.83
392_G	452_E	0.658	0.83
226_A	230_E	0.654	0.82
116_D	121_L	0.653	0.82
148_T	301_A	0.652	0.82
74_V	277_L	0.651	0.82
122_D	125_G	0.648	0.82
382_Q	390_S	0.648	0.82
343_T	346_I	0.646	0.81
417_T	421_L	0.645	0.81
173_T	357_T	0.644	0.81
118_K	218_L	0.638	0.81
97_V	100_G	0.637	0.81
386_M	390_S	0.637	0.81
183_I	257_L	0.637	0.81
396_A	452_E	0.636	0.80
371_G	397_L	0.636	0.80
114_P	121_L	0.633	0.80
458_D	467_F	0.631	0.80
396_A	420_Q	0.631	0.80
462_S	466_S	0.631	0.80
188_D	255_D	0.631	0.80
268_V	344_N	0.631	0.80
180_I	208_V	0.629	0.80
338_S	345_V	0.628	0.80
152_A	370_P	0.628	0.80
377_V	382_Q	0.627	0.79
356_E	372_I	0.627	0.79
104_L	191_I	0.626	0.79
25_A	89_K	0.626	0.79
267_A	341_V	0.626	0.79
459_V	462_S	0.626	0.79
108_V	111_L	0.625	0.79
235_Q	247_E	0.625	0.79
167_I	353_I	0.625	0.79
114_P	120_P	0.625	0.79
423_H	426_K	0.624	0.79
40_R	72_G	0.622	0.79
175_K	261_D	0.621	0.79
460_E	466_S	0.621	0.79
201_K	265_K	0.620	0.79
188_D	191_I	0.619	0.79
155_S	158_P	0.619	0.79
92_G	95_L	0.619	0.79
465_G	470_A	0.618	0.79
193_C	221_T	0.618	0.79
47_C	90_C	0.617	0.78
184_I	193_C	0.616	0.78
258_I	301_A	0.616	0.78
243_C	246_G	0.615	0.78
239_P	260_Y	0.614	0.78
143_D	303_R	0.614	0.78
115_I	225_V	0.613	0.78
60_Y	63_A	0.613	0.78
385_I	389_L	0.612	0.78
189_S	220_N	0.611	0.78
143_D	321_T	0.611	0.78
52_M	95_L	0.609	0.78
132_I	296_R	0.609	0.78
193_C	259_I	0.609	0.78
114_P	118_K	0.608	0.77
106_R	120_P	0.608	0.77
243_C	260_Y	0.606	0.77
128_A	131_A	0.605	0.77
160_G	381_A	0.605	0.77
245_M	249_F	0.605	0.77
35_S	38_V	0.604	0.77
453_R	465_G	0.603	0.77
441_V	445_S	0.603	0.77
150_Y	182_A	0.602	0.77
147_Q	442_A	0.601	0.77
147_Q	444_Q	0.599	0.76
165_E	351_G	0.599	0.76
120_P	123_H	0.598	0.76
426_K	461_L	0.597	0.76
72_G	277_L	0.597	0.76
426_K	429_E	0.595	0.76
182_A	185_N	0.593	0.76
43_G	47_C	0.592	0.76
460_E	470_A	0.591	0.75
66_L	72_G	0.591	0.75
279_R	302_A	0.589	0.75
160_G	376_R	0.589	0.75
126_F	419_K	0.588	0.75
271_R	341_V	0.588	0.75
266_Q	270_Y	0.587	0.75
182_A	186_Q	0.587	0.75
425_Q	428_T	0.587	0.75
128_A	244_A	0.586	0.75
107_V	115_I	0.585	0.75
78_P	81_D	0.584	0.75
104_L	254_E	0.584	0.75
180_I	225_V	0.581	0.74
65_N	72_G	0.580	0.74
392_G	460_E	0.579	0.74
102_G	119_G	0.579	0.74
211_K	214_E	0.579	0.74
453_R	456_L	0.577	0.74
407_S	417_T	0.577	0.74
403_L	408_Q	0.573	0.73
39_I	79_Y	0.571	0.73
102_G	121_L	0.571	0.73
429_E	465_G	0.570	0.73
171_R	347_S	0.570	0.73
110_T	114_P	0.570	0.73
91_T	94_I	0.569	0.73
213_E	221_T	0.569	0.73
171_R	268_V	0.567	0.72
115_I	230_E	0.566	0.72
195_Y	205_I	0.566	0.72
383_T	449_F	0.565	0.72
101_R	124_D	0.563	0.72
389_L	452_E	0.563	0.72
461_L	464_I	0.562	0.72
154_D	186_Q	0.562	0.72
103_L	123_H	0.560	0.71
44_L	47_C	0.559	0.71
27_N	45_A	0.559	0.71
143_D	440_S	0.559	0.71
125_G	128_A	0.558	0.71
440_S	446_L	0.558	0.71
64_L	277_L	0.557	0.71
263_L	297_L	0.556	0.71
158_P	374_V	0.555	0.71
244_A	248_Y	0.555	0.71
445_S	449_F	0.554	0.71
145_P	441_V	0.554	0.71
99_V	103_L	0.553	0.71
57_G	89_K	0.553	0.71
384_K	434_K	0.551	0.70
130_E	240_Y	0.551	0.70
171_R	346_I	0.551	0.70
120_P	124_D	0.551	0.70
303_R	319_G	0.550	0.70
461_L	466_S	0.549	0.70
250_R	324_L	0.548	0.70
107_V	225_V	0.548	0.70
165_E	353_I	0.546	0.70
243_C	247_E	0.546	0.70
411_S	421_L	0.545	0.69
430_L	444_Q	0.545	0.69
236_Y	273_I	0.543	0.69
347_S	374_V	0.543	0.69
108_V	112_G	0.543	0.69
418_R	422_D	0.542	0.69
111_L	409_F	0.542	0.69
212_L	217_A	0.542	0.69
410_A	418_R	0.540	0.69
153_V	178_L	0.539	0.69
31_I	34_V	0.538	0.68
240_Y	277_L	0.538	0.68
55_L	60_Y	0.538	0.68
170_D	332_T	0.537	0.68
110_T	113_A	0.536	0.68
464_I	467_F	0.536	0.68
224_V	241_A	0.535	0.68
184_I	215_H	0.534	0.68
76_M	240_Y	0.534	0.68
458_D	464_I	0.534	0.68
167_I	402_E	0.533	0.68
130_E	296_R	0.533	0.68
159_I	187_R	0.532	0.68
447_V	450_A	0.532	0.68
168_I	349_T	0.532	0.68
161_R	292_Y	0.531	0.67
460_E	464_I	0.531	0.67
38_V	240_Y	0.529	0.67
151_K	447_V	0.527	0.67
74_V	405_A	0.526	0.67
205_I	227_T	0.526	0.67
286_F	405_A	0.526	0.67
176_T	261_D	0.525	0.67
27_N	46_D	0.524	0.66
441_V	444_Q	0.524	0.66
336_D	339_A	0.524	0.66
197_A	200_Q	0.524	0.66
143_D	380_A	0.522	0.66
383_T	388_K	0.522	0.66
62_I	95_L	0.520	0.66
442_A	446_L	0.519	0.66
118_K	123_H	0.519	0.66
48_M	83_A	0.518	0.66
137_I	369_N	0.517	0.65
140_Q	320_K	0.517	0.65
101_R	120_P	0.516	0.65
38_V	276_L	0.516	0.65
144_Q	321_T	0.515	0.65
104_L	107_V	0.515	0.65
379_G	382_Q	0.515	0.65
35_S	277_L	0.514	0.65
218_L	223_V	0.513	0.65
363_G	395_T	0.513	0.65
231_S	235_Q	0.512	0.65
25_A	28_E	0.512	0.65
235_Q	250_R	0.511	0.65
283_R	287_P	0.510	0.64
298_L	328_P	0.510	0.64
350_D	376_R	0.510	0.64
48_M	66_L	0.510	0.64
333_Q	338_S	0.509	0.64
216_G	221_T	0.508	0.64
458_D	463_K	0.506	0.64
379_G	435_Q	0.506	0.64
235_Q	326_A	0.506	0.64
359_L	362_A	0.506	0.64
233_A	273_I	0.506	0.64
235_Q	268_V	0.505	0.64
76_M	111_L	0.505	0.64
383_T	442_A	0.504	0.63
53_I	63_A	0.504	0.63
75_V	82_L	0.504	0.63
230_E	287_P	0.502	0.63
334_A	343_T	0.501	0.63
270_Y	273_I	0.501	0.63
186_Q	438_P	0.501	0.63
272_Q	286_F	0.501	0.63
148_T	168_I	0.501	0.63
413_L	417_T	0.500	0.63
123_H	248_Y	0.500	0.63
188_D	219_A	0.500	0.63

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3oaaA	2	0.9513	100	0.065	Contact Map
2qe7A	1	0.924	100	0.073	Contact Map
1fx0A	1	0.9298	100	0.088	Contact Map
2ck3A	1	0.9337	100	0.091	Contact Map
2r9vA	1	0.9474	100	0.097	Contact Map
3j9tA	1	0.9259	100	0.173	Contact Map
3mfyA	1	0.7778	100	0.175	Contact Map
3vr4A	1	0.9318	100	0.184	Contact Map
3gqbA	1	0.922	100	0.186	Contact Map
3vr4D	1	0.8441	100	0.19	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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