GREMLIN Database
YCFJ - Uncharacterized protein YcfJ
UniProt: P0AB35 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG12444
Length: 179 (156)
Sequences: 318 (222)
Seq/√Len: 17.8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
84_I88_F4.8931.00
34_Y164_Q4.5751.00
35_A167_L3.1410.99
86_H98_T3.1160.99
43_I143_D3.0010.99
61_H124_T2.7390.98
93_G97_A2.7380.98
143_D156_R2.5520.97
86_H95_D2.5120.96
56_N127_Q2.4770.96
44_K139_M2.3820.95
74_S106_G2.3380.94
57_V128_R2.3240.94
148_I167_L1.9520.87
92_R95_D1.9450.86
157_M165_I1.9400.86
33_Q166_P1.8720.84
83_V86_H1.8560.84
148_I171_G1.8010.82
157_M160_D1.7500.80
51_R134_D1.7070.78
110_N114_G1.6990.78
56_N125_T1.6880.77
82_G86_H1.6570.76
37_V42_P1.6390.75
37_V165_I1.6370.75
17_L20_A1.6220.74
87_Q93_G1.6210.74
52_Q127_Q1.6210.74
60_T123_T1.6190.74
43_I135_K1.6170.74
84_I97_A1.6110.74
145_T152_Q1.5790.72
146_Y162_G1.5530.71
48_K133_Y1.5450.71
86_H140_L1.5390.70
111_Q114_G1.4850.67
21_A24_S1.4710.67
41_T145_T1.4670.66
157_M162_G1.4210.64
73_G109_G1.3890.62
87_Q90_G1.3880.62
88_F97_A1.3510.60
76_L115_S1.3380.59
87_Q91_G1.3160.58
52_Q115_S1.3070.57
53_E132_V1.3030.57
73_G97_A1.3000.57
115_S119_S1.2470.54
95_D99_V1.2190.52
19_V25_L1.2030.51
93_G98_T1.2020.51
61_H126_Q1.1950.50
86_H92_R1.1730.49
73_G102_A1.1700.49
34_Y127_Q1.1590.48
38_V79_V1.1560.48
148_I153_G1.1360.47
73_G93_G1.1300.46
32_P96_V1.1300.46
70_R114_G1.1280.46
16_A20_A1.1230.46
16_A24_S1.1090.45
106_G158_D1.1070.45
102_A110_N1.0970.44
72_T114_G1.0920.44
20_A23_A1.0670.43
80_A83_V1.0610.42
153_G162_G1.0600.42
91_G97_A1.0600.42
18_G22_V1.0580.42
78_A82_G1.0490.42
80_A86_H1.0250.40
92_R99_V1.0150.40
33_Q167_L1.0010.39
76_L82_G0.9910.38
38_V165_I0.9840.38
80_A84_I0.9830.38
55_R76_L0.9800.38
38_V83_V0.9800.38
144_V162_G0.9770.37
112_I143_D0.9750.37
63_R66_Q0.9730.37
78_A106_G0.9670.37
16_A21_A0.9570.36
153_G160_D0.9510.36
63_R122_Y0.9400.35
58_T123_T0.9290.35
33_Q169_S0.9200.34
78_A86_H0.9150.34
75_V165_I0.9130.34
39_S168_D0.9130.34
70_R111_Q0.9130.34
153_G165_I0.9080.34
73_G128_R0.9080.34
99_V154_K0.8920.33
51_R132_V0.8850.32
35_A144_V0.8810.32
76_L83_V0.8710.32
16_A19_V0.8690.31
19_V112_I0.8640.31
83_V108_A0.8470.30
41_T163_T0.8400.30
17_L25_L0.8360.30
45_E130_K0.8350.30
102_A106_G0.8320.30
87_Q97_A0.8270.29
90_G94_K0.8270.29
49_T128_R0.8250.29
35_A158_D0.8240.29
73_G91_G0.8220.29
79_V84_I0.8070.28
76_L102_A0.8010.28
96_V169_S0.7940.28
64_P119_S0.7890.27
82_G99_V0.7860.27
41_T115_S0.7790.27
65_V113_Q0.7790.27
42_P160_D0.7780.27
19_V80_A0.7770.27
99_V107_Y0.7710.27
156_R164_Q0.7670.26
43_I140_L0.7630.26
87_Q98_T0.7580.26
51_R128_R0.7560.26
78_A114_G0.7390.25
79_V92_R0.7350.25
90_G102_A0.7320.25
46_T149_G0.7320.25
45_E140_L0.7220.24
82_G107_Y0.7170.24
116_L171_G0.7160.24
52_Q131_T0.7140.24
106_G144_V0.7080.24
104_G107_Y0.7080.24
153_G169_S0.7060.24
148_I169_S0.7050.23
39_S166_P0.7050.23
108_A135_K0.7030.23
106_G110_N0.7010.23
59_V131_T0.7000.23
148_I168_D0.6910.23
86_H100_V0.6910.23
45_E170_N0.6840.23
120_D154_K0.6830.23
24_S28_F0.6820.22
36_Q39_S0.6750.22
78_A98_T0.6730.22
80_A149_G0.6720.22
71_I75_V0.6710.22
22_V25_L0.6700.22
90_G165_I0.6650.22
75_V104_G0.6600.22
125_T132_V0.6590.22
55_R130_K0.6580.21
144_V161_P0.6530.21
33_Q46_T0.6510.21
47_V80_A0.6500.21
35_A100_V0.6470.21
46_T84_I0.6440.21
35_A61_H0.6360.21
80_A88_F0.6340.21
88_F99_V0.6320.20
69_N75_V0.6300.20
79_V82_G0.6250.20
17_L23_A0.6250.20
36_Q45_E0.6240.20
82_G104_G0.6220.20
76_L128_R0.6210.20
19_V22_V0.6190.20
72_T107_Y0.6180.20
53_E140_L0.6150.20
44_K137_E0.6140.20
87_Q135_K0.6130.20
83_V111_Q0.6120.20
49_T163_T0.6120.20
146_Y157_M0.6100.20
103_L133_Y0.6080.19
21_A25_L0.6070.19
66_Q118_E0.6070.19
75_V132_V0.6050.19
57_V79_V0.6030.19
136_S139_M0.5980.19
107_Y166_P0.5980.19
47_V76_L0.5920.19
19_V82_G0.5880.19
19_V23_A0.5770.18
50_P131_T0.5770.18
36_Q94_K0.5770.18
116_L167_L0.5710.18
147_K152_Q0.5700.18
41_T143_D0.5690.18
99_V141_G0.5650.18
103_L134_D0.5650.18
148_I166_P0.5640.18
74_S164_Q0.5630.18
44_K157_M0.5600.18
29_E108_A0.5590.18
104_G108_A0.5580.18
110_N115_S0.5550.18
82_G98_T0.5540.18
46_T135_K0.5510.17
67_D90_G0.5500.17
68_E113_Q0.5480.17
36_Q147_K0.5470.17
80_A147_K0.5420.17
83_V135_K0.5400.17
77_G85_G0.5390.17
77_G81_G0.5390.17
81_G85_G0.5390.17
55_R128_R0.5370.17
99_V114_G0.5370.17
39_S148_I0.5320.17
25_L28_F0.5310.17
17_L22_V0.5310.17
96_V99_V0.5300.17
33_Q165_I0.5300.17
56_N126_Q0.5300.17
31_G149_G0.5280.17
50_P121_T0.5230.16
48_K124_T0.5220.16
62_R118_E0.5220.16
105_G161_P0.5210.16
34_Y62_R0.5190.16
90_G154_K0.5190.16
74_S109_G0.5180.16
42_P59_V0.5170.16
68_E117_Q0.5170.16
168_D171_G0.5140.16
38_V145_T0.5120.16
21_A63_R0.5110.16
136_S148_I0.5110.16
100_V126_Q0.5000.16
78_A151_Q0.5000.16
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3zbiC 1 0.1564 34.2 0.946 Contact Map
3ldtA 2 0.3911 19.3 0.952 Contact Map
2kluA 1 0.3575 19.2 0.952 Contact Map
4hlsA 2 0.4637 17.4 0.953 Contact Map
2jwaA 2 0.2458 14.2 0.955 Contact Map
2lbgA 1 0.1508 12.1 0.956 Contact Map
3nb3A 2 0.4749 11.8 0.956 Contact Map
2ks1B 1 0.2458 9.2 0.959 Contact Map
1iijA 1 0.1955 8.2 0.959 Contact Map
4md5B 1 0.3408 7.1 0.961 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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